Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

6257151 .. 6259483

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G115800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGAGGAATTCTGGGGTTCTAGCGCGACAATTGCTTGGCAATCGCAGCAAGCTCTGCGCAGCTCTTCTCAATCATCACCACAAGCTTCCTTCTAATTCTTTCCAAACTCTAGCTTCAATCTCGACCACCCCATCTTCTTCACACACAACCCCTTCCAATTCCAAACCCTTCTCCAAGTCCGTTCATCACTTCTCGAACCCTCATTTTCTGCAACACCGACCCCTCTCCTCACCCTCAGGGCCCTCAAAAATTGTCCCCATTAGGTCAGAGAATGAATATGATAGCGCAGTTAACATAGTTCAAGATAAAGCTTTGCCAGGACTCTTCTACTTCACTGCAGTCTGGTGCGGGCCTTGCAGGTTCATATCTCCAGTCATTGGAGAGTTGAGTGAGCAATACCCACATGTGACAACATATAAGATTGACATTGACGAGGAAGGCCTTGCAAACACTCTGGGCAAGCTGAATATTTCCTCCGTGCCAACATTCCAATTCTTTCAAGATGGGAAGAAGGTAGCTGAAATTATTGGTGCTGATGTTGCACGCCTGAGGGACACTTTTGGAAAACTCTACAAATCTTATTTGTGGACCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

200

Amino Acids

22.04

Weight (kDa)

9.4

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	351
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	120, 305, 503
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	7 cut(s)	55, 65, 88, 116, 314, 466, 521
AluI	AGCT	7 cut(s)	55, 65, 88, 116, 314, 466, 521
AoxI	GGCC	3 cut(s)	242, 353, 442
ApaI	GGGCCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	48, 62
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	3 cut(s)	28, 62, 290
AspS9I	GGNCC	4 cut(s)	242, 243, 353, 591
AsuHPI	GGTGA	2 cut(s)	71, 225
AvaII	GGWCC	1 cut(s)	591
AxyI	CCTNAGG	2 cut(s)	238, 551
BaeGI	GKGCMC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	60, 74
BccI	CCATC	2 cut(s)	142, 500
BciT130I	CCWGG	1 cut(s)	321
BfaI	CTAG	2 cut(s)	23, 113
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	2 cut(s)	49, 63
BlsI	GCNGC	2 cut(s)	50, 64
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	591
BmgT120I	GGNCC	4 cut(s)	242, 243, 353, 591
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	374
Bse21I	CCTNAGG	2 cut(s)	238, 551
BseBI	CCWGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	252, 542
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	60, 74
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	244, 355, 444
BslFI	GGGAC	2 cut(s)	242, 569
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	242, 569
BsnI	GGCC	3 cut(s)	244, 355, 444
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	3 cut(s)	244, 355, 444
BspCNI	CTCAG	2 cut(s)	251, 543
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	351
BspQI	GCTCTTC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	72, 332
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	4 cut(s)	53, 353, 464, 547
BstDEI	CTNAG	2 cut(s)	238, 551
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	3 cut(s)	28, 62, 290
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 48, 57, 357, 542
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	60, 74
Bsu36I	CCTNAGG	2 cut(s)	238, 551
BsuRI	GGCC	3 cut(s)	244, 355, 444
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	4 cut(s)	53, 353, 464, 547
CfoI	GCGC	3 cut(s)	28, 62, 290
Cfr13I	GGNCC	4 cut(s)	242, 243, 353, 591
CviAII	CATG	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	238, 551
Eam1104I	CTCTTC	2 cut(s)	72, 332
EarI	CTCTTC	2 cut(s)	72, 332
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	591
Eco81I	CCTNAGG	2 cut(s)	238, 551
EcoO109I	RGGNCCY	2 cut(s)	242, 243
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	410
FaiI	YATR	6 cut(s)	282, 299, 368, 408, 418, 420
FaqI	GGGAC	2 cut(s)	242, 569
FatI	CATG	1 cut(s)	406
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	2 cut(s)	49, 63
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	49, 63
FspBI	CTAG	2 cut(s)	23, 113
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	3 cut(s)	27, 61, 289
GluI	GCNGC	2 cut(s)	49, 63
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	244, 355, 444
HhaI	GCGC	3 cut(s)	28, 62, 290
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	3 cut(s)	26, 60, 288
HinP1I	GCGC	3 cut(s)	26, 60, 288
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	2 cut(s)	86, 312
HinfI	GANTC	1 cut(s)	324
HpaI	GTTAAC	1 cut(s)	295
HphI	GGTGA	2 cut(s)	71, 225
Hpy166II	GTNNAC	2 cut(s)	295, 591
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	4 cut(s)	124, 196, 305, 503
Hpy8I	GTNNAC	2 cut(s)	295, 591
HpyAV	CCTTC	5 cut(s)	102, 165, 181, 434, 508
HpyCH4V	TGCA	5 cut(s)	214, 341, 360, 449, 545
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 48, 57, 357, 542
HpyF3I	CTNAG	2 cut(s)	238, 551
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	3 cut(s)	26, 60, 288
KspAI	GTTAAC	1 cut(s)	295
LguI	GCTCTTC	1 cut(s)	72
LpnPI	CCDG	8 cut(s)	225, 306, 331, 333, 346, 387, 443, 563
Lsp1109I	GCAGC	2 cut(s)	60, 74
MaeI	CTAG	2 cut(s)	23, 113
MaeIII	GTNAC	1 cut(s)	409
MboII	GAAGA	5 cut(s)	59, 129, 132, 319, 523
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	7 cut(s)	10, 32, 97, 160, 252, 494, 525
MlyI	GAGTC	1 cut(s)	318
MnlI	CCTC	8 cut(s)	213, 236, 241, 247, 256, 430, 487, 546
MseI	TTAA	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	5 cut(s)	34, 48, 57, 357, 542
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	409
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	50, 64
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PscI	ACATGT	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	244
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	4 cut(s)	242, 243, 353, 591
PstI	CTGCAG	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	49, 63
Sau96I	GGNCC	4 cut(s)	242, 243, 353, 591
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	591
Sse9I	AATT	7 cut(s)	10, 32, 97, 160, 252, 494, 525
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	2 cut(s)	23, 113
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	319
TaqI	TCGA	2 cut(s)	125, 197
TasI	AATT	7 cut(s)	10, 32, 97, 160, 252, 494, 525
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	48, 62
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	176, 291, 355
TspGWI	ACGGA	2 cut(s)	172, 469
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	591
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	2 cut(s)	23, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.