Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Forward (+)

79592639 .. 79595399

Gene Structure 2761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCTCCGGCCCGCCTTGTTCTTCGTCTTAAACCCTCCCACACATGGAAGCAGCAGAGCTCGACACAAAAATGGCGAGAAGAAACTCAGGGCTTCTCCTGGTGCGCCAATTGCTTGCCAATCGCAGCAACCTCTGCGCTGCTCTTCTTCCTCACCACAACCTCCTTCTTATTCAATCCCAACCCTAACTTCATTCTCAAAGACCCAATCTTCACCTCCTCCCAATCCAAAACCCTTCTCCAATTTCTCAACCTTCCGATCCCTCTCATCGTCATCAGGTGCTCCCTCCAACATTGTACTCGTTAAGTCTGAGGATGAGTTGAAGAGCGCCCTGAGCAAAGCTAAAGATGGGTCTCTGCCGGCGATTTTTTACTTCACTGCAGTGTGGTGCGGGCCGTGCAGGTTCATAGCTCCAGTTATTGGGGAATTGAGTGAGAAGTACCCACATGTGACCACATTTAAGATTGACATTGACGAGGAGGGCCTTGGAAGTGCATTGGGCAAGTTGAATATTTCCTCTGTGCCAACATTCCAGTTCTTTCAAAATGGGAAAATGGCAGCTGAAGTTGTTGGTGCTGATGCTGCACGCTTGAAAGATATTTTTGGAAAACTCTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

206

Amino Acids

22.18

Weight (kDa)

9.61

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	101 - 198	9.2e-18	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	419
AciI	CCGC	2 cut(s)	12, 390
AclWI	GGATC	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	297, 440
AfiI	CCNNNNNNNGG	2 cut(s)	44, 419
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	5 cut(s)	174, 322, 508, 542, 592
AjnI	CCWGG	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	4 cut(s)	59, 341, 410, 560
AluI	AGCT	4 cut(s)	59, 341, 410, 560
Alw21I	GWGCWC	2 cut(s)	61, 283
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	3 cut(s)	8, 392, 481
ApeKI	GCWGC	5 cut(s)	51, 124, 138, 557, 581
AspLEI	GCGC	3 cut(s)	106, 138, 329
AspS9I	GGNCC	3 cut(s)	9, 392, 481
AsuHPI	GGTGA	2 cut(s)	144, 204
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	61, 283
BbvI	GCAGC	5 cut(s)	63, 125, 136, 568, 569
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	390
BisI	GCNGC	5 cut(s)	52, 125, 139, 558, 582
BlsI	GCNGC	5 cut(s)	53, 126, 140, 559, 583
Bme1390I	CCNGG	1 cut(s)	99
BmgT120I	GGNCC	3 cut(s)	9, 392, 481
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 419
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	2 cut(s)	413, 532
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	44, 419
BseMII	CTCAG	3 cut(s)	100, 300, 323
BseNI	ACTGG	2 cut(s)	413, 532
BseRI	GAGGAG	2 cut(s)	207, 491
BseXI	GCAGC	5 cut(s)	63, 125, 136, 568, 569
BsgI	GTGCAG	2 cut(s)	418, 567
BshFI	GGCC	3 cut(s)	10, 394, 483
BsiHKAI	GWGCWC	2 cut(s)	61, 283
BsiSI	CCGG	2 cut(s)	7, 359
BslI	CCNNNNNNNGG	2 cut(s)	44, 419
BsmAI	GTCTC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	10, 394, 483
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	61, 283
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	12, 390
BspANI	GGCC	3 cut(s)	10, 394, 483
BspCNI	CTCAG	3 cut(s)	99, 301, 324
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	252
BspQI	GCTCTTC	2 cut(s)	148, 317
BspTNI	GGTCTC	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	413, 532
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	99
Bst6I	CTCTTC	2 cut(s)	148, 317
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	5 cut(s)	12, 115, 360, 392, 586
BstDEI	CTNAG	3 cut(s)	86, 309, 332
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	106, 138, 329
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 133, 333, 396, 581
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	63, 125, 136, 568, 569
BsuRI	GGCC	3 cut(s)	10, 394, 483
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	2 cut(s)	375, 387
BtsIMutI	CAGTG	2 cut(s)	375, 387
BveI	ACCTGC	1 cut(s)	390
Cac8I	GCNNGC	5 cut(s)	12, 115, 360, 392, 586
CfoI	GCGC	3 cut(s)	106, 138, 329
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	9, 392, 481
Csp6I	GTAC	2 cut(s)	296, 439
CviAII	CATG	2 cut(s)	44, 446
CviJI	RGCY	8 cut(s)	10, 59, 92, 341, 394, 410, 483, 560
CviKI_1	RGCY	8 cut(s)	10, 59, 92, 341, 394, 410, 483, 560
CviQI	GTAC	2 cut(s)	296, 439
DdeI	CTNAG	3 cut(s)	86, 309, 332
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	148, 317
EarI	CTCTTC	2 cut(s)	148, 317
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	47, 449
FaiI	YATR	3 cut(s)	45, 407, 447
FatI	CATG	2 cut(s)	43, 445
FauI	CCCGC	2 cut(s)	19, 383
Fnu4HI	GCNGC	5 cut(s)	52, 125, 139, 558, 582
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	5 cut(s)	52, 125, 139, 558, 582
GlaI	GCGC	3 cut(s)	105, 137, 328
GluI	GCNGC	5 cut(s)	52, 125, 139, 558, 582
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	10, 394, 483
HapII	CCGG	2 cut(s)	7, 359
HhaI	GCGC	3 cut(s)	106, 138, 329
Hin1II	CATG	2 cut(s)	47, 449
Hin6I	GCGC	3 cut(s)	104, 136, 327
HinP1I	GCGC	3 cut(s)	104, 136, 327
HpaII	CCGG	2 cut(s)	7, 359
HphI	GGTGA	2 cut(s)	144, 204
Hpy188I	TCNGA	2 cut(s)	257, 310
HpyAV	CCTTC	3 cut(s)	174, 244, 262
HpyCH4V	TGCA	4 cut(s)	380, 399, 494, 584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 133, 333, 396, 581
HpyF3I	CTNAG	3 cut(s)	86, 309, 332
Hsp92II	CATG	2 cut(s)	47, 449
HspAI	GCGC	3 cut(s)	104, 136, 327
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	257
LguI	GCTCTTC	2 cut(s)	148, 317
LmnI	GCTCC	3 cut(s)	9, 286, 415
Lsp1109I	GCAGC	5 cut(s)	63, 125, 136, 568, 569
LweI	GCATC	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	6 cut(s)	13, 91, 135, 138, 201, 334
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	61, 283
MluCI	AATT	3 cut(s)	108, 241, 425
MmeI	TCCRAC	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	358
MseI	TTAA	3 cut(s)	29, 303, 459
MslI	CAYNNNNRTG	2 cut(s)	69, 380
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	2 cut(s)	7, 359
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	110, 133, 333, 396, 581
NaeI	GCCGGC	1 cut(s)	360
NdeII	GATC	1 cut(s)	257
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	47, 449
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	380
PciI	ACATGT	1 cut(s)	445
PciSI	GCTCTTC	2 cut(s)	148, 317
PdiI	GCCGGC	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	5 cut(s)	53, 126, 140, 559, 583
PscI	ACATGT	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspPI	GGNCC	3 cut(s)	9, 392, 481
PstI	CTGCAG	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	297, 440
RsaNI	GTAC	2 cut(s)	296, 439
RseI	CAYNNNNRTG	2 cut(s)	69, 380
SacI	GAGCTC	1 cut(s)	61
SapI	GCTCTTC	2 cut(s)	148, 317
SaqAI	TTAA	3 cut(s)	29, 303, 459
SatI	GCNGC	5 cut(s)	52, 125, 139, 558, 582
Sau3AI	GATC	1 cut(s)	257
Sau96I	GGNCC	3 cut(s)	9, 392, 481
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	61, 283
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	2 cut(s)	69, 380
Sse9I	AATT	3 cut(s)	108, 241, 425
SsiI	CCGC	2 cut(s)	12, 390
SspI	AATATT	1 cut(s)	511
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	484
TaqI	TCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	108, 241, 425
TatI	WGTACW	1 cut(s)	295
Tru1I	TTAA	3 cut(s)	29, 303, 459
Tru9I	TTAA	3 cut(s)	29, 303, 459
TscAI	CASTG	2 cut(s)	382, 387
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	5 cut(s)	51, 124, 138, 557, 581
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	180, 394
TspRI	CASTG	2 cut(s)	382, 387
Van91I	CCANNNNNTGG	1 cut(s)	419
XceI	RCATGY	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.