Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004791

Physical Location & Seq

Genomic Coordinates Reverse (-)

51646367 .. 51649484

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1415400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGAGGGTAGTAGGACAGTTGCTTAGCAATCGCAACAATCCCTGCCGAGGTCTTCTCCATCATCTGAAGCAGCAGCAGCGTCCTTGCAATTTTATCCAAACCCAAACCCTAATTTCGGCCAGATTATCATCACCAGAGTCAACTCCTTCCACTAAAGAAAGCCCCTTCAACATTTACAACCTTCATGAATTTGCGAAAGAAATTGTGTATGGCCGGCCTCTGCATCCACCCACAGGTCCCTCTCATGTTATCCTTACATCACCGGATAAGCTTGATCGCGACATTCGAAATATTTCTTTTAGGGGTTTGTCAGCAGTTTTCTACATGACTGGGCGCCGTCGTCCTAAGAGGAAGCTTGTCGATTCAGTCCTTATCAATTTTAGCGGGCAGTTCCCACATGTGACAATATATGAGATGGTCCTTCCCAAGGATTACATTGGACGTACAATAGGCCCATTTCATTTCACAACTTTGCCAATGTTTTTTTTCTATGAACGTGGGGAAATGGTAGATGAAGTGGTTGGTGCTGACGTCGTTGGCTTGAGAGATACATTGGCATATCACTACGGTTGGGAGGAATCTGAAGATATTGTCACAATTGGAAGCGGATCGACTATCGCAAAAACTACGACAAAAGTTTATGAAGATGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

220

Amino Acids

24.95

Weight (kDa)

8.83

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31020 AT2G35010 AT2G35010
fragaria_vesca	FvH4_3g12700 FvH4_3g12700 FvH4_3g12700
malus_domestica	MD05G1092600.v1.1 MD05G1346300.v1.1 MD10G1228900.v1.1 MD10G1322700.v1.1 MD10G1338300.v1.1 MD15G1415400.v1.1 MD17G1134000.v1.1
prunus_persica	Prupe.4G115800_v2.0.a1 Prupe.4G115800_v2.0.a1
pyrus_communis	pycom04g16220 pycom05g22440 pycom10g19250 pycom15g10290
rosa_chinensis	RchiOBHm_Chr5g0020681
rosa_laevigata	RLG00000032553
rosa_multiflora	Rmu_sc0005607.1_g000027
rosa_roxburghii	Rroxscaffold_1G00057610
rosa_rugosa	Rorug05G0062400 Rorug05G0062400 Rorug05G0062400
rosa_samantha	Rh5AG152100 Rh5BG151800 Rh5CG163200 Rh5DG151100
rosa_wichuraiana	Rw5G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	336
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	387, 609
AclWI	GGATC	1 cut(s)	619
AcoI	YGGCCR	2 cut(s)	120, 214
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	2 cut(s)	89, 606
AcyI	GRCGYC	2 cut(s)	337, 534
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	4 cut(s)	50, 118, 236, 430
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	274, 358
AluI	AGCT	2 cut(s)	274, 358
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	4 cut(s)	120, 214, 218, 454
ApeKI	GCWGC	3 cut(s)	73, 76, 79
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	3 cut(s)	239, 421, 455
AsuHPI	GGTGA	2 cut(s)	126, 255
AsuII	TTCGAA	1 cut(s)	289
AvaII	GGWCC	2 cut(s)	239, 421
BanI	GGYRCC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	85, 88, 91
BccI	CCATC	2 cut(s)	69, 412
BceAI	ACGGC	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	340
BisI	GCNGC	3 cut(s)	74, 77, 80
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	75, 78, 81
Bme18I	GGWCC	2 cut(s)	239, 421
BmgT120I	GGNCC	3 cut(s)	239, 421, 455
BmiI	GGNNCC	2 cut(s)	241, 338
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
Bpu1102I	GCTNAGC	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	565
BsaBI	GATNNNNATC	1 cut(s)	130
BsaHI	GRCGYC	2 cut(s)	337, 534
BsaJI	CCNNGG	2 cut(s)	49, 429
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 118, 236, 430
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	49, 429
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	130
BseLI	CCNNNNNNNGG	4 cut(s)	50, 118, 236, 430
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	85, 88, 91
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	122, 216, 220, 456
BshNI	GGYRCC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	217, 266
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	50, 118, 236, 430
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	4 cut(s)	122, 216, 220, 456
Bsp119I	TTCGAA	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	277, 611
Bsp1720I	GCTNAGC	1 cut(s)	26
Bsp68I	TCGCGA	1 cut(s)	282
BspACI	CCGC	2 cut(s)	387, 609
BspANI	GGCC	4 cut(s)	122, 216, 220, 456
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	241, 338
BspPI	GGATC	1 cut(s)	619
BspT104I	TTCGAA	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	49, 429
BssMI	GATC	2 cut(s)	277, 611
BssNI	GRCGYC	2 cut(s)	337, 534
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	21, 572
BstACI	GRCGYC	2 cut(s)	337, 534
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	218, 389
BstDEI	CTNAG	2 cut(s)	26, 348
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	280, 614
BstMBI	GATC	2 cut(s)	277, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	404
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	85, 88, 91
BstV2I	GAAGAC	1 cut(s)	47
BsuRI	GGCC	4 cut(s)	122, 216, 220, 456
BtsCI	GGATG	1 cut(s)	226
BtuMI	TCGCGA	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	218, 389
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	239, 421, 455
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	4 cut(s)	188, 248, 328, 401
CviJI	RGCY	8 cut(s)	122, 165, 216, 220, 274, 358, 456, 543
CviKI_1	RGCY	8 cut(s)	122, 165, 216, 220, 274, 358, 456, 543
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	2 cut(s)	26, 348
DinI	GGCGCC	1 cut(s)	338
DpnI	GATC	2 cut(s)	279, 613
DpnII	GATC	2 cut(s)	277, 611
EaeI	YGGCCR	2 cut(s)	120, 214
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	239, 421
Eco57I	CTGAAG	2 cut(s)	89, 606
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	429
EgeI	GGCGCC	1 cut(s)	338
EheI	GGCGCC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	4 cut(s)	191, 251, 331, 404
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	4 cut(s)	187, 247, 327, 400
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	3 cut(s)	74, 77, 80
FokI	GGATG	1 cut(s)	213
FseI	GGCCGGCC	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	74, 77, 80
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	3 cut(s)	74, 77, 80
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	4 cut(s)	122, 216, 220, 456
HapII	CCGG	2 cut(s)	217, 266
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	2 cut(s)	337, 534
Hin1II	CATG	4 cut(s)	191, 251, 331, 404
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	2 cut(s)	272, 356
HinfI	GANTC	3 cut(s)	140, 365, 581
HpaII	CCGG	2 cut(s)	217, 266
HphI	GGTGA	2 cut(s)	126, 255
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	69, 586
Hpy188III	TCNNGA	2 cut(s)	188, 281
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	2 cut(s)	345, 539
HpyAV	CCTTC	4 cut(s)	159, 178, 194, 434
HpyCH4III	ACNGT	2 cut(s)	21, 572
HpyCH4IV	ACGT	3 cut(s)	445, 499, 534
HpyCH4V	TGCA	2 cut(s)	90, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	26, 348
HpySE526I	ACGT	3 cut(s)	445, 499, 534
Hsp92I	GRCGYC	2 cut(s)	337, 534
Hsp92II	CATG	4 cut(s)	191, 251, 331, 404
HspAI	GCGC	1 cut(s)	337
KasI	GGCGCC	1 cut(s)	336
KroI	GCCGGC	1 cut(s)	216
KroNI	GCCGGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	277, 611
LpnPI	CCDG	7 cut(s)	58, 136, 150, 222, 230, 279, 318
Lsp1109I	GCAGC	3 cut(s)	85, 88, 91
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	3 cut(s)	445, 499, 534
MaeIII	GTNAC	2 cut(s)	403, 595
MalI	GATC	2 cut(s)	279, 613
MboI	GATC	2 cut(s)	277, 611
MboII	GAAGA	3 cut(s)	47, 599, 659
MfeI	CAATTG	1 cut(s)	600
MluCI	AATT	6 cut(s)	91, 114, 191, 204, 379, 600
Mly113I	GGCGCC	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	44, 231, 253, 345, 571
MroNI	GCCGGC	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	295
MspI	CCGG	2 cut(s)	217, 266
MunI	CAATTG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	79
NaeI	GCCGGC	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	337
NdeII	GATC	2 cut(s)	277, 611
NgoMIV	GCCGGC	1 cut(s)	216
NlaIII	CATG	4 cut(s)	191, 251, 331, 404
NlaIV	GGNNCC	2 cut(s)	241, 338
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	403, 595
NruI	TCGCGA	1 cut(s)	282
NspI	RCATGY	1 cut(s)	404
NspV	TTCGAA	1 cut(s)	289
PagI	TCATGA	1 cut(s)	187
PciI	ACATGT	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	365, 581
PkrI	GCNGC	3 cut(s)	75, 78, 81
PleI	GAGTC	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	239
PscI	ACATGT	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	241, 338
PspPI	GGNCC	3 cut(s)	239, 421, 455
PspPPI	RGGWCCY	1 cut(s)	239
RigI	GGCCGGCC	1 cut(s)	220
RruI	TCGCGA	1 cut(s)	282
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SatI	GCNGC	3 cut(s)	74, 77, 80
Sau3AI	GATC	2 cut(s)	277, 611
Sau96I	GGNCC	3 cut(s)	239, 421, 455
SchI	GAGTC	1 cut(s)	149
SetI	ASST	8 cut(s)	55, 186, 241, 276, 360, 448, 502, 537
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	289
SinI	GGWCC	2 cut(s)	239, 421
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	6 cut(s)	91, 114, 191, 204, 379, 600
SsiI	CCGC	2 cut(s)	387, 609
SspDI	GGCGCC	1 cut(s)	336
SspI	AATATT	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	21, 572
TaiI	ACGT	3 cut(s)	448, 502, 537
TaqI	TCGA	3 cut(s)	289, 363, 614
TasI	AATT	6 cut(s)	91, 114, 191, 204, 379, 600
TfiI	GAWTC	2 cut(s)	365, 581
TseFI	GTSAC	2 cut(s)	403, 595
TseI	GCWGC	3 cut(s)	73, 76, 79
Tsp45I	GTSAC	2 cut(s)	403, 595
TspDTI	ATGAA	6 cut(s)	176, 204, 452, 510, 531, 660
VpaK11BI	GGWCC	2 cut(s)	239, 421
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	295
ZraI	GACGTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.