Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Reverse (-)

11217695 .. 11219618

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTCAAAACCCTCACCGGAAAAACCATAACCCTAGAGGTCGAAAGCAGCGACACCATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAGCTTGAAGATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCACTTGGTATTGAGGCTTAGGGGTGGGACTATGATTAAGGTGAAGACTCTCACAGGGAAGGAAATTGAGATTGATATCGAACCAACCGATACTATTGATCGGATTAAGGAACGTGTTGAGGAGAAAGAAGGTATCCCTCCTGTTCAACAAAGGCTAATCTACGCCGGAAAACAGCTAGCTGATGACAAAACGGCAAAGGACTACAACATAGAGGGAGGCTCTGTTCTTCATCTGGTTCTTGCCCTTAGGGGTGGTTTTGGTCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

156

Amino Acids

17.4

Weight (kDa)

5.77

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
ubiquitin	PF00240	79 - 149	3.2e-28	Ubiquitin family
Rad60-SLD	PF11976	79 - 147	6.2e-16	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	152, 347
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	3 cut(s)	148, 376, 380
AluI	AGCT	3 cut(s)	148, 376, 380
ApeKI	GCWGC	2 cut(s)	57, 145
ApoI	RAATTY	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	16, 253
AsuNHI	GCTAGC	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	251, 455
BbvI	GCAGC	2 cut(s)	69, 157
BccI	CCATC	2 cut(s)	74, 149
BceAI	ACGGC	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	344
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	2 cut(s)	44, 377
BfuI	GTATCC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	58, 146
BlsI	GCNGC	2 cut(s)	59, 147
BmtI	GCTAGC	1 cut(s)	380
BpiI	GAAGAC	2 cut(s)	251, 455
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu10I	CCTNAGC	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse21I	CCTNAGG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	69, 157
BsiSI	CCGG	2 cut(s)	27, 366
BslFI	GGGAC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	6, 115, 298
BspACI	CCGC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	380
BssMI	GATC	3 cut(s)	6, 115, 298
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	218, 446
BstKTI	GATC	3 cut(s)	9, 118, 301
BstMBI	GATC	3 cut(s)	6, 115, 298
BstV1I	GCAGC	2 cut(s)	69, 157
BstV2I	GAAGAC	2 cut(s)	251, 455
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	378
CviJI	RGCY	7 cut(s)	83, 148, 217, 355, 376, 380, 420
CviKI_1	RGCY	7 cut(s)	83, 148, 217, 355, 376, 380, 420
DdeI	CTNAG	2 cut(s)	218, 446
DpnI	GATC	3 cut(s)	8, 117, 300
DpnII	GATC	3 cut(s)	6, 115, 298
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	277
Eco81I	CCTNAGG	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	277
FaiI	YATR	3 cut(s)	38, 233, 410
FaqI	GGGAC	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	58, 146
Fsp4HI	GCNGC	2 cut(s)	58, 146
FspBI	CTAG	2 cut(s)	44, 377
GluI	GCNGC	2 cut(s)	58, 146
HapII	CCGG	2 cut(s)	27, 366
HinfI	GANTC	3 cut(s)	191, 196, 247
HpaII	CCGG	2 cut(s)	27, 366
HphI	GGTGA	2 cut(s)	16, 253
Hpy188I	TCNGA	3 cut(s)	186, 303, 470
Hpy188III	TCNNGA	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	253, 323
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	218, 446
HpySE526I	ACGT	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	6, 115, 298
LpnPI	CCDG	8 cut(s)	40, 77, 123, 126, 240, 354, 379, 419
Lsp1109I	GCAGC	2 cut(s)	69, 157
MaeI	CTAG	2 cut(s)	44, 377
MaeII	ACGT	1 cut(s)	313
MalI	GATC	3 cut(s)	8, 117, 300
MboI	GATC	3 cut(s)	6, 115, 298
MboII	GAAGA	5 cut(s)	164, 191, 256, 419, 455
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	2 cut(s)	87, 264
MlyI	GAGTC	2 cut(s)	190, 241
MnlI	CCTC	9 cut(s)	32, 40, 94, 117, 207, 313, 348, 406, 410
MseI	TTAA	2 cut(s)	237, 306
MspI	CCGG	2 cut(s)	27, 366
NdeII	GATC	3 cut(s)	6, 115, 298
NheI	GCTAGC	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 285
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	59, 147
PleI	GAGTC	2 cut(s)	190, 241
PpsI	GAGTC	2 cut(s)	190, 241
PsuI	RGATCY	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	237, 306
SatI	GCNGC	2 cut(s)	58, 146
Sau3AI	GATC	3 cut(s)	6, 115, 298
SchI	GAGTC	2 cut(s)	190, 241
SetI	ASST	9 cut(s)	51, 115, 128, 150, 243, 316, 334, 378, 382
Sse9I	AATT	2 cut(s)	87, 264
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	44, 377
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	4 cut(s)	51, 69, 194, 279
TasI	AATT	2 cut(s)	87, 264
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	237, 306
Tru9I	TTAA	2 cut(s)	237, 306
TseI	GCWGC	2 cut(s)	57, 145
TspDTI	ATGAA	1 cut(s)	419
Tth111I	GACNNNGTC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	87
XspI	CTAG	2 cut(s)	44, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.