Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Forward (+)

24156816 .. 24157975

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGATTAAGGTGAAGACTCTTACTGGGAAAGAAATTGAGATTGACATAGACCCGATTGACACCATTGGCCTAATCAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCTCCGGTGCAACAAAGGCTGATTTATGCTGGCAAGCAGCTTGGAGATGACAAAACTGCTAAAGACTATAACATTGAGGGTGGCTCTGTCCTTCATCTAGTGCTTGCACTACGTGGTGGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

77

Amino Acids

8.44

Weight (kDa)

5.3

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	2 - 72	1e-26	Ubiquitin family
Rad60-SLD	PF11976	2 - 70	2e-14	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BsaAI	YACGTR	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	136, 140, 210
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	136, 140, 210
CviJI	RGCY	4 cut(s)	69, 124, 145, 189
CviKI_1	RGCY	4 cut(s)	69, 124, 145, 189
DraIII	CACNNNGTG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	102
FaiI	YATR	4 cut(s)	47, 132, 174, 232
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	110
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	115, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	9, 120, 123
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	217
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	2 cut(s)	33, 102
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	4 cut(s)	82, 91, 117, 175
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	10
SetI	ASST	3 cut(s)	12, 147, 220
Sse9I	AATT	2 cut(s)	33, 102
SspMI	CTAG	1 cut(s)	203
TaiI	ACGT	1 cut(s)	220
TasI	AATT	2 cut(s)	33, 102
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.