Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31340 AT2G35635 |
| fragaria_vesca | FvH4_3g15350 FvH4_6g21361 |
| malus_domestica | MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1 |
| prunus_persica | Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1 |
| pyrus_communis | pycom10g17580 pycom12g04500 pycom14g04010 |
| rosa_chinensis | RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431 |
| rosa_laevigata | RLG00000032875 |
| rosa_multiflora | Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008 |
| rosa_roxburghii | Rroxscaffold_6G00403390 |
| rosa_rugosa | Rorug03G0165100 Rorug05G0088500 |
| rosa_samantha | Rh3AG215400 Rh3AG215900 |
| rosa_wichuraiana | Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 251 |
| AciI | CCGC | 2 cut(s) | 195, 251 |
| AcsI | RAATTY | 1 cut(s) | 138 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 112 |
| AgsI | TTSAA | 2 cut(s) | 86, 262 |
| AjnI | CCWGG | 1 cut(s) | 9 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 165, 197 |
| ApoI | RAATTY | 1 cut(s) | 138 |
| AsuC2I | CCSGG | 1 cut(s) | 61 |
| AsuHPI | GGTGA | 2 cut(s) | 58, 139 |
| BbsI | GAAGAC | 1 cut(s) | 56 |
| BccI | CCATC | 1 cut(s) | 172 |
| BciT130I | CCWGG | 1 cut(s) | 11 |
| BcnI | CCSGG | 1 cut(s) | 61 |
| BisI | GCNGC | 1 cut(s) | 195 |
| BlsI | GCNGC | 1 cut(s) | 196 |
| Bme1390I | CCNGG | 2 cut(s) | 11, 61 |
| BmrFI | CCNGG | 2 cut(s) | 11, 61 |
| BpiI | GAAGAC | 1 cut(s) | 56 |
| BpuMI | CCSGG | 1 cut(s) | 61 |
| BsaWI | WCCGGW | 1 cut(s) | 145 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseBI | CCWGG | 1 cut(s) | 11 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsiSI | CCGG | 2 cut(s) | 60, 146 |
| BslFI | GGGAC | 1 cut(s) | 186 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsmFI | GGGAC | 1 cut(s) | 186 |
| BspACI | CCGC | 2 cut(s) | 195, 251 |
| BsrBI | CCGCTC | 1 cut(s) | 251 |
| Bst2UI | CCWGG | 1 cut(s) | 11 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 194 |
| BstNI | CCWGG | 1 cut(s) | 11 |
| BstSCI | CCNGG | 2 cut(s) | 9, 59 |
| BstV2I | GAAGAC | 1 cut(s) | 56 |
| CsiI | ACCWGGT | 1 cut(s) | 9 |
| CviJI | RGCY | 2 cut(s) | 22, 188 |
| CviKI_1 | RGCY | 2 cut(s) | 22, 188 |
| EcoRI | GAATTC | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 9 |
| FaiI | YATR | 2 cut(s) | 38, 270 |
| FaqI | GGGAC | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 1 cut(s) | 195 |
| Fsp4HI | GCNGC | 1 cut(s) | 195 |
| GluI | GCNGC | 1 cut(s) | 195 |
| HapII | CCGG | 2 cut(s) | 60, 146 |
| HinfI | GANTC | 2 cut(s) | 52, 108 |
| HpaII | CCGG | 2 cut(s) | 60, 146 |
| HphI | GGTGA | 2 cut(s) | 58, 139 |
| HpyCH4V | TGCA | 1 cut(s) | 151 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 194 |
| LpnPI | CCDG | 4 cut(s) | 23, 73, 159, 170 |
| MabI | ACCWGGT | 1 cut(s) | 9 |
| MaeIII | GTNAC | 1 cut(s) | 160 |
| MbiI | CCGCTC | 1 cut(s) | 251 |
| MboII | GAAGA | 1 cut(s) | 61 |
| MluCI | AATT | 4 cut(s) | 69, 138, 223, 265 |
| MlyI | GAGTC | 1 cut(s) | 46 |
| MnlI | CCTC | 7 cut(s) | 12, 23, 118, 127, 153, 222, 228 |
| MseI | TTAA | 3 cut(s) | 42, 102, 222 |
| MspI | CCGG | 2 cut(s) | 60, 146 |
| MspR9I | CCNGG | 2 cut(s) | 11, 61 |
| MvaI | CCWGG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 194 |
| NciI | CCSGG | 1 cut(s) | 61 |
| NmuCI | GTSAC | 1 cut(s) | 160 |
| PfeI | GAWTC | 1 cut(s) | 108 |
| PkrI | GCNGC | 1 cut(s) | 196 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| Psp6I | CCWGG | 1 cut(s) | 9 |
| PspGI | CCWGG | 1 cut(s) | 9 |
| SaqAI | TTAA | 3 cut(s) | 42, 102, 222 |
| SatI | GCNGC | 1 cut(s) | 195 |
| SchI | GAGTC | 1 cut(s) | 46 |
| ScrFI | CCNGG | 2 cut(s) | 11, 61 |
| SetI | ASST | 3 cut(s) | 12, 48, 129 |
| SexAI | ACCWGGT | 1 cut(s) | 9 |
| SgeI | CNNG | 9 cut(s) | 22, 23, 72, 73, 124, 158, 197, 240, 288 |
| Sse9I | AATT | 4 cut(s) | 69, 138, 223, 265 |
| SsiI | CCGC | 2 cut(s) | 195, 251 |
| StyD4I | CCNGG | 2 cut(s) | 9, 59 |
| TaqI | TCGA | 1 cut(s) | 227 |
| TasI | AATT | 4 cut(s) | 69, 138, 223, 265 |
| TauI | GCSGC | 1 cut(s) | 197 |
| TfiI | GAWTC | 1 cut(s) | 108 |
| Tru1I | TTAA | 3 cut(s) | 42, 102, 222 |
| Tru9I | TTAA | 3 cut(s) | 42, 102, 222 |
| TseFI | GTSAC | 1 cut(s) | 160 |
| Tsp45I | GTSAC | 1 cut(s) | 160 |
| XapI | RAATTY | 1 cut(s) | 138 |