Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Forward (+)

30441705 .. 30443917

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1205300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAGATTTTCGTGAAGACCCTAACCGGAAAGACCATCACTTTGGAGGTCGAGAGCAGCGACACCGTCGACAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTGAGGCTGAGGGGAGGAACTATGATTAAGGTGAAGACTCTGACTGGAAAAGAAATTGAGATCGATATTGAACCAACTGATACCATTGACCGGATCAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCCCCTGTGCAACAAAGGCTTATTTATGCTGGCAAGCAGCTTGGAGATGACAGAACAGCTAAAGACTACAACATTGAGGGTGGTTCTGTGCTTCACCTGGTGCTTGCACTTAGGGGTGGCAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

155

Amino Acids

17.19

Weight (kDa)

5.96

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	8.1e-18	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.2e-32	Ubiquitin family
ubiquitin	PF00240	79 - 149	6e-28	Ubiquitin family
Rad60-SLD	PF11976	79 - 147	8.2e-16	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	82, 311
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	436
AfiI	CCNNNNNNNGG	2 cut(s)	300, 307
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	3 cut(s)	90, 204, 432
AluBI	AGCT	2 cut(s)	376, 395
AluI	AGCT	2 cut(s)	376, 395
AlwI	GGATC	2 cut(s)	82, 311
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	57, 373
ApoI	RAATTY	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AsuHPI	GGTGA	3 cut(s)	194, 253, 422
BbsI	GAAGAC	2 cut(s)	23, 251
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	69, 385
BccI	CCATC	2 cut(s)	44, 149
BciT130I	CCWGG	3 cut(s)	92, 206, 434
BclI	TGATCA	1 cut(s)	115
BisI	GCNGC	2 cut(s)	58, 374
BlsI	GCNGC	2 cut(s)	59, 375
Bme1390I	CCNGG	3 cut(s)	92, 206, 434
BmrFI	CCNGG	3 cut(s)	92, 206, 434
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	23, 251
Bpu10I	CCTNAGC	1 cut(s)	218
Bsa29I	ATCGAT	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	26, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 307
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	3 cut(s)	92, 206, 434
BseCI	ATCGAT	1 cut(s)	273
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	2 cut(s)	300, 307
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	69, 385
BshFI	GGCC	1 cut(s)	159
BshVI	ATCGAT	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	27, 301
BslI	CCNNNNNNNGG	2 cut(s)	300, 307
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	87, 115, 270, 303
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	210
BspDI	ATCGAT	1 cut(s)	273
BspPI	GGATC	2 cut(s)	82, 311
BsrI	ACTGG	1 cut(s)	259
BssMI	GATC	4 cut(s)	87, 115, 270, 303
Bst2UI	CCWGG	3 cut(s)	92, 206, 434
Bst4CI	ACNGT	1 cut(s)	67
BstC8I	GCNNGC	3 cut(s)	367, 371, 441
BstDEI	CTNAG	2 cut(s)	218, 446
BstF5I	GGATG	2 cut(s)	105, 180
BstKTI	GATC	4 cut(s)	90, 118, 273, 306
BstMBI	GATC	4 cut(s)	87, 115, 270, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	3 cut(s)	92, 206, 434
BstSCI	CCNGG	3 cut(s)	90, 204, 432
BstV1I	GCAGC	2 cut(s)	69, 385
BstV2I	GAAGAC	2 cut(s)	23, 251
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	159
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	3 cut(s)	367, 371, 441
ClaI	ATCGAT	1 cut(s)	273
CsiI	ACCWGGT	2 cut(s)	204, 432
CviJI	RGCY	6 cut(s)	83, 159, 217, 355, 376, 395
CviKI_1	RGCY	6 cut(s)	83, 159, 217, 355, 376, 395
DdeI	CTNAG	2 cut(s)	218, 446
DpnI	GATC	4 cut(s)	89, 117, 272, 305
DpnII	GATC	4 cut(s)	87, 115, 270, 303
DraIII	CACNNNGTG	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	3 cut(s)	90, 204, 432
FaiI	YATR	3 cut(s)	177, 233, 363
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	58, 374
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	2 cut(s)	58, 374
GluI	GCNGC	2 cut(s)	58, 374
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	27, 301
HincII	GTYRAC	2 cut(s)	70, 195
HindII	GTYRAC	2 cut(s)	70, 195
HinfI	GANTC	2 cut(s)	191, 247
HpaII	CCGG	2 cut(s)	27, 301
HphI	GGTGA	3 cut(s)	194, 253, 422
Hpy166II	GTNNAC	2 cut(s)	70, 195
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	13, 52, 113
Hpy8I	GTNNAC	2 cut(s)	70, 195
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	4, 346, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	218, 446
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	87, 115, 270, 303
Lsp1109I	GCAGC	2 cut(s)	69, 385
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	2 cut(s)	204, 432
MalI	GATC	4 cut(s)	89, 117, 272, 305
MboI	GATC	4 cut(s)	87, 115, 270, 303
MboII	GAAGA	3 cut(s)	28, 164, 256
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	3 cut(s)	146, 264, 333
MlyI	GAGTC	2 cut(s)	200, 241
MnlI	CCTC	8 cut(s)	40, 120, 207, 213, 218, 313, 322, 406
MseI	TTAA	1 cut(s)	237
MspI	CCGG	2 cut(s)	27, 301
MspR9I	CCNGG	3 cut(s)	92, 206, 434
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	3 cut(s)	92, 206, 434
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	4 cut(s)	87, 115, 270, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PflFI	GACNNNGTC	2 cut(s)	65, 74
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	59, 375
PleI	GAGTC	2 cut(s)	199, 241
PpsI	GAGTC	2 cut(s)	199, 241
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	90, 204, 432
PspGI	CCWGG	3 cut(s)	90, 204, 432
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	2 cut(s)	65, 74
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	58, 374
Sau3AI	GATC	4 cut(s)	87, 115, 270, 303
SchI	GAGTC	2 cut(s)	200, 241
ScrFI	CCNGG	3 cut(s)	92, 206, 434
SetI	ASST	6 cut(s)	51, 207, 243, 378, 397, 435
SexAI	ACCWGGT	2 cut(s)	204, 432
SfaNI	GCATC	1 cut(s)	114
Sse9I	AATT	3 cut(s)	146, 264, 333
SsiI	CCGC	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	90, 204, 432
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	51, 69, 273
TasI	AATT	3 cut(s)	146, 264, 333
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseI	GCWGC	2 cut(s)	57, 373
Tth111I	GACNNNGTC	2 cut(s)	65, 74
XapI	RAATTY	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.