Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Forward (+)

22163374 .. 22165337

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCAGATTTTCGTGACAACTCTAACTGGGAAGAACATCACTCTTGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAAGCCAAGATCCGGGATAAGGAAGGCATCCCTCCTGATCAACAGAAATTGATTTTTGCCTGTAAGCAATTGGAAGATGGCGGAACTCTTGCAGATTATAAGATCCAAAAGGAGTCAACTCTTTACCTGGTTTTGAGGCTGAGGGGCGGACCTATGATTAAGGTGAAGGCTCTTACCGGGAATGAAATTGAGATTGATATTGAATCGACTGACACCATTGACCAAATCAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCTCCGGTGCAACAAAGGCTGATTTATGCTGGCAAGCTTGGAGATGAGAAAACTGCAAAAGACTACAACATTGAAGGTGGCTTTGTCCTTCATTTACTGCCTGCACTACGTGGTGGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

153

Amino Acids

16.98

Weight (kDa)

5.15

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 70	1.7e-13	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	8.9e-26	Ubiquitin family
ubiquitin	PF00240	79 - 145	7.6e-22	Ubiquitin family
Rad60-SLD	PF11976	79 - 144	2.5e-10	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AciI	CCGC	2 cut(s)	159, 225
AclWI	GGATC	2 cut(s)	82, 175
AcsI	RAATTY	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	446
AfiI	CCNNNNNNNGG	3 cut(s)	90, 97, 307
AgsI	TTSAA	2 cut(s)	281, 410
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
AlwI	GGATC	2 cut(s)	82, 175
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	2 cut(s)	92, 256
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	227
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	74, 149
BciT130I	CCWGG	1 cut(s)	206
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	92, 256
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	3 cut(s)	92, 206, 256
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	3 cut(s)	92, 206, 256
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	92, 256
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 97, 307
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	69
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	90, 97, 307
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	423
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	91, 255, 341
BslI	CCNNNNNNNGG	3 cut(s)	90, 97, 307
Bsp143I	GATC	3 cut(s)	87, 115, 180
BspACI	CCGC	2 cut(s)	159, 225
BspCNI	CTCAG	1 cut(s)	210
BspDI	ATCGAT	1 cut(s)	69
BspPI	GGATC	2 cut(s)	82, 175
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	87, 115, 180
Bst2UI	CCWGG	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	367, 371, 438
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	90, 118, 183
BstMBI	GATC	3 cut(s)	87, 115, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	90, 204, 254
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	87, 180
BstYI	RGATCY	2 cut(s)	87, 180
Bsu15I	ATCGAT	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	367, 371, 438
Cfr13I	GGNCC	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	204
CviJI	RGCY	6 cut(s)	83, 217, 248, 355, 373, 417
CviKI_1	RGCY	6 cut(s)	83, 217, 248, 355, 373, 417
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	3 cut(s)	89, 117, 182
DpnII	GATC	3 cut(s)	87, 115, 180
DraIII	CACNNNGTG	1 cut(s)	446
EciI	GGCGGA	2 cut(s)	174, 240
Eco47I	GGWCC	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	204
FaiI	YATR	4 cut(s)	177, 233, 363, 460
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
HapII	CCGG	3 cut(s)	91, 255, 341
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	191, 281
HpaII	CCGG	3 cut(s)	91, 255, 341
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	13, 44, 113
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	4 cut(s)	95, 238, 404, 434
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	5 cut(s)	4, 170, 346, 392, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	87, 115, 180
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	89, 117, 182
MboI	GATC	3 cut(s)	87, 115, 180
MboII	GAAGA	2 cut(s)	43, 164
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	2 cut(s)	87, 180
MluCI	AATT	4 cut(s)	125, 146, 264, 333
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	40, 120, 207, 213, 313, 322, 348
MseI	TTAA	1 cut(s)	237
MspI	CCGG	3 cut(s)	91, 255, 341
MspR9I	CCNGG	3 cut(s)	92, 206, 256
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	352
NciI	CCSGG	2 cut(s)	92, 256
NdeII	GATC	3 cut(s)	87, 115, 180
NmuCI	GTSAC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	2 cut(s)	87, 180
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	3 cut(s)	87, 115, 180
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	92, 206, 256
SetI	ASST	7 cut(s)	51, 207, 232, 243, 375, 415, 448
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	125, 146, 264, 333
SsiI	CCGC	2 cut(s)	159, 225
StyD4I	CCNGG	3 cut(s)	90, 204, 254
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	69, 284
TasI	AATT	4 cut(s)	125, 146, 264, 333
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	276, 416
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.