Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Reverse (-)

4365562 .. 4367728

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGACAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAACTGGAAGATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTGGTCTTGAGGCTGAGAGGAGGAACCATGATTAAGGTGAAGACTCTTACTGGGAAAGAAATTGAGATTGATATTGAACCAACTGATACCATTGATCGGATCAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCTCCAGTGCAACAAAGGCTTATCTATGCTGGCAAGCAGCTCGGGGACGACAAGACAGCTAAAGAGTACAACATTGAGGGGGGCTCTGTCCTTCATCTTGTGCTTGCACTACGAGGTGGTAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

155

Amino Acids

17.18

Weight (kDa)

5.78

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AclWI	GGATC	2 cut(s)	82, 311
AcsI	RAATTY	1 cut(s)	333
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	27, 97, 300
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	90, 204
AluBI	AGCT	2 cut(s)	376, 395
AluI	AGCT	2 cut(s)	376, 395
AlwI	GGATC	2 cut(s)	82, 311
Ama87I	CYCGRG	2 cut(s)	44, 377
ApeKI	GCWGC	2 cut(s)	57, 373
ApoI	RAATTY	1 cut(s)	333
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	194, 253
AvaI	CYCGRG	2 cut(s)	44, 377
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	38, 251
BbvI	GCAGC	2 cut(s)	69, 385
BccI	CCATC	3 cut(s)	44, 74, 149
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	2 cut(s)	92, 206
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	28
BisI	GCNGC	2 cut(s)	58, 374
BlsI	GCNGC	2 cut(s)	59, 375
Bme1390I	CCNGG	3 cut(s)	28, 92, 206
BmeT110I	CYCGRG	2 cut(s)	44, 377
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	28, 92, 206
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	2 cut(s)	38, 251
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 97, 300
Bse1I	ACTGG	3 cut(s)	153, 259, 341
BseBI	CCWGG	2 cut(s)	92, 206
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	3 cut(s)	27, 97, 300
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	3 cut(s)	153, 259, 341
BseRI	GAGGAG	2 cut(s)	237, 335
BseXI	GCAGC	2 cut(s)	69, 385
BsiHKCI	CYCGRG	2 cut(s)	44, 377
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	3 cut(s)	27, 97, 300
BsmFI	GGGAC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	44, 377
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	4 cut(s)	87, 115, 298, 303
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	82, 311
BsrI	ACTGG	3 cut(s)	153, 259, 341
BssMI	GATC	4 cut(s)	87, 115, 298, 303
Bst2UI	CCWGG	2 cut(s)	92, 206
BstC8I	GCNNGC	3 cut(s)	367, 371, 441
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	105, 180
BstKTI	GATC	4 cut(s)	90, 118, 301, 306
BstMBI	GATC	4 cut(s)	87, 115, 298, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	2 cut(s)	92, 206
BstSCI	CCNGG	3 cut(s)	26, 90, 204
BstV1I	GCAGC	2 cut(s)	69, 385
BstV2I	GAAGAC	2 cut(s)	38, 251
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	105, 180
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	367, 371, 441
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	83, 217, 355, 376, 395, 420
CviKI_1	RGCY	6 cut(s)	83, 217, 355, 376, 395, 420
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	4 cut(s)	89, 117, 300, 305
DpnII	GATC	4 cut(s)	87, 115, 298, 303
Eco24I	GRGCYC	1 cut(s)	422
Eco88I	CYCGRG	2 cut(s)	44, 377
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	90, 204
EcoT38I	GRGCYC	1 cut(s)	422
FaeI	CATG	1 cut(s)	235
FaiI	YATR	3 cut(s)	177, 233, 363
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	58, 374
FokI	GGATG	2 cut(s)	92, 167
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	2 cut(s)	58, 374
GluI	GCNGC	2 cut(s)	58, 374
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	191, 247
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	194, 253
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	5 cut(s)	13, 44, 113, 184, 211
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	95, 181, 437
HpyCH4V	TGCA	4 cut(s)	4, 170, 346, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	87, 115, 298, 303
Lsp1109I	GCAGC	2 cut(s)	69, 385
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MalI	GATC	4 cut(s)	89, 117, 300, 305
MboI	GATC	4 cut(s)	87, 115, 298, 303
MboII	GAAGA	3 cut(s)	43, 164, 256
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	2 cut(s)	264, 333
MlyI	GAGTC	2 cut(s)	200, 241
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	3 cut(s)	28, 92, 206
MvaI	CCWGG	2 cut(s)	92, 206
MwoI	GCNNNNNNNGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	4 cut(s)	87, 115, 298, 303
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	59, 375
PleI	GAGTC	2 cut(s)	199, 241
PpsI	GAGTC	2 cut(s)	199, 241
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	90, 204
PspGI	CCWGG	2 cut(s)	90, 204
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	58, 374
Sau3AI	GATC	4 cut(s)	87, 115, 298, 303
SchI	GAGTC	2 cut(s)	200, 241
ScrFI	CCNGG	3 cut(s)	28, 92, 206
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	6 cut(s)	51, 207, 243, 378, 397, 454
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	44, 211
SmoI	CTYRAG	2 cut(s)	44, 211
Sse9I	AATT	2 cut(s)	264, 333
StyD4I	CCNGG	3 cut(s)	26, 90, 204
TaqI	TCGA	3 cut(s)	45, 69, 160
TasI	AATT	2 cut(s)	264, 333
TatI	WGTACW	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	2 cut(s)	57, 373
TspDTI	ATGAA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.