Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001218.1

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Forward (+)

4754 .. 8051

Gene Structure 3298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgcacaggttttttcctgtgacacaagttcaactttctaatcctggaaactcaaggaatcagcttgcaagaatgctagccattgattcaagtggctgcttcattgctgctagtgcatatgtagaccggttggctatgttctctgataaggaaggcatccctcctgatcaacagagattgatttttgcctgtaagcaattggaagatggcagaactcttgcagattataagatccaaaaggagtcaactcttaacctggttttgaggctgaggggcagacctatgattaaggtgaaggctcttaccgggaatgaaattgagattgatattgaatcgactgacaccgttgaccgaatcaaggaaagggttgaggagaaagagggaattcctccggtgcaacaaaggctgatttatgctggcaagcttggagatgacaaaactgcaaaagactacaacattgaaggtggctttgtccttcatttactgcctgcactacgtggtggtagtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

170

Amino Acids

19.01

Weight (kDa)

7.75

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	384
AdeI	CACNNNGTG	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	32, 90, 332, 461
AjnI	CCWGG	2 cut(s)	43, 255
AluBI	AGCT	2 cut(s)	64, 424
AluI	AGCT	2 cut(s)	64, 424
AlwI	GGATC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	96, 107
ApoI	RAATTY	1 cut(s)	384
AsiGI	ACCGGT	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	304
AsuNHI	GCTAGC	1 cut(s)	76
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	83, 94
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	45, 257
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	307
BfaI	CTAG	2 cut(s)	77, 111
BisI	GCNGC	2 cut(s)	97, 108
BlsI	GCNGC	2 cut(s)	98, 109
Bme1390I	CCNGG	3 cut(s)	45, 257, 307
BmrFI	CCNGG	3 cut(s)	45, 257, 307
BmsI	GCATC	1 cut(s)	165
BmtI	GCTAGC	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	497
BsaWI	WCCGGW	2 cut(s)	126, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	45, 257
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	83, 94
BsgI	GTGCAG	1 cut(s)	474
BshTI	ACCGGT	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	127, 306, 392
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	166, 231
BspCNI	CTCAG	1 cut(s)	261
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssMI	GATC	2 cut(s)	166, 231
Bst2UI	CCWGG	2 cut(s)	45, 257
Bst4CI	ACNGT	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	5 cut(s)	66, 78, 418, 422, 489
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	169, 234
BstMBI	GATC	2 cut(s)	166, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 403
BstNI	CCWGG	2 cut(s)	45, 257
BstSCI	CCNGG	3 cut(s)	43, 255, 305
BstV1I	GCAGC	2 cut(s)	83, 94
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	5 cut(s)	66, 78, 418, 422, 489
Cfr10I	RCCGGY	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	255
CspAI	ACCGGT	1 cut(s)	126
CviJI	RGCY	9 cut(s)	64, 80, 96, 134, 268, 299, 406, 424, 468
CviKI_1	RGCY	9 cut(s)	64, 80, 96, 134, 268, 299, 406, 424, 468
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	168, 233
DpnII	GATC	2 cut(s)	166, 231
DraIII	CACNNNGTG	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	43, 255
FaiI	YATR	7 cut(s)	118, 120, 137, 228, 284, 414, 511
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FauNDI	CATATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	97, 108
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	97, 108
FspBI	CTAG	2 cut(s)	77, 111
GluI	GCNGC	2 cut(s)	97, 108
HapII	CCGG	3 cut(s)	127, 306, 392
HincII	GTYRAC	2 cut(s)	246, 349
HindII	GTYRAC	2 cut(s)	246, 349
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	58, 86, 242, 332, 354
HpaII	CCGG	3 cut(s)	127, 306, 392
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	3 cut(s)	124, 246, 349
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	3 cut(s)	124, 246, 349
HpyAV	CCTTC	4 cut(s)	146, 289, 455, 485
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	4, 68, 116, 221, 397, 443, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 403
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	166, 231
Lsp1109I	GCAGC	2 cut(s)	83, 94
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	255
MaeI	CTAG	2 cut(s)	77, 111
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	168, 233
MboI	GATC	2 cut(s)	166, 231
MboII	GAAGA	1 cut(s)	215
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	3 cut(s)	197, 315, 384
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	6 cut(s)	171, 258, 264, 364, 373, 399
MseI	TTAA	2 cut(s)	252, 288
MspI	CCGG	3 cut(s)	127, 306, 392
MspR9I	CCNGG	3 cut(s)	45, 257, 307
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	2 cut(s)	45, 257
MwoI	GCNNNNNNNGC	2 cut(s)	113, 403
NciI	CCSGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	2 cut(s)	166, 231
NheI	GCTAGC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	58, 86, 332, 354
PfoI	TCCNGGA	1 cut(s)	43
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	98, 109
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	43, 255
PspGI	CCWGG	2 cut(s)	43, 255
PsuI	RGATCY	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	252, 288
SatI	GCNGC	2 cut(s)	97, 108
Sau3AI	GATC	2 cut(s)	166, 231
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	45, 257, 307
SetI	ASST	8 cut(s)	11, 66, 258, 283, 294, 426, 466, 499
SexAI	ACCWGGT	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	3 cut(s)	197, 315, 384
SspMI	CTAG	2 cut(s)	77, 111
StyD4I	CCNGG	3 cut(s)	43, 255, 305
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	335
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	197, 315, 384
TfiI	GAWTC	4 cut(s)	58, 86, 332, 354
Tru1I	TTAA	2 cut(s)	252, 288
Tru9I	TTAA	2 cut(s)	252, 288
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	96, 107
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	91, 327, 467
XapI	RAATTY	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	77, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.