Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Forward (+)

23858479 .. 23861089

Gene Structure 2611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAGATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGTAGATCTCTTGCAGATTATAACATCCAAAAGGAGTCAACTCTTCACCTGGTTTTGAGGCTGAGGGGAGGAACTATGATTAAGGTGAAGACTCTTACCGGGAAAGAAATTGAGATTGACATTGAACCGACTGACACCATTGACCGAATTAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCTCCGGTGCAACAAAGGCTGATTTATGCTGGCAAGCAGCTTGGAGATGACAAAACTGCTAAAGACTATAACATTGAGGGTGGCTCTGTCCTTCATCTAGTGCTGGCACTACGTGGTGGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

154

Amino Acids

17.14

Weight (kDa)

5.77

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.1e-16	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.2e-31	Ubiquitin family
ubiquitin	PF00240	79 - 149	5.8e-28	Ubiquitin family
Rad60-SLD	PF11976	79 - 147	4.7e-16	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	97, 307
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	90, 204
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	57, 373
ApoI	RAATTY	1 cut(s)	333
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	194, 253
AvaI	CYCGRG	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	38, 251
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	69, 385
BccI	CCATC	3 cut(s)	44, 74, 149
BciT130I	CCWGG	2 cut(s)	92, 206
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	256
BfaI	CTAG	1 cut(s)	434
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	2 cut(s)	58, 374
BlsI	GCNGC	2 cut(s)	59, 375
Bme1390I	CCNGG	3 cut(s)	92, 206, 256
BmeT110I	CYCGRG	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	92, 206, 256
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	2 cut(s)	38, 251
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu10I	CCTNAGC	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 307
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	92, 206
BseCI	ATCGAT	1 cut(s)	69
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	2 cut(s)	97, 307
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	69, 385
BshVI	ATCGAT	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	138, 255, 341
BslI	CCNNNNNNNGG	2 cut(s)	97, 307
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	87, 115, 161
BspCNI	CTCAG	1 cut(s)	210
BspDI	ATCGAT	1 cut(s)	69
BspPI	GGATC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	3 cut(s)	87, 115, 161
Bst2UI	CCWGG	2 cut(s)	92, 206
Bst6I	CTCTTC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	3 cut(s)	367, 371, 441
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	105, 180
BstKTI	GATC	3 cut(s)	90, 118, 164
BstMBI	GATC	3 cut(s)	87, 115, 161
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	2 cut(s)	92, 206
BstSCI	CCNGG	3 cut(s)	90, 204, 254
BstV1I	GCAGC	2 cut(s)	69, 385
BstV2I	GAAGAC	2 cut(s)	38, 251
BstX2I	RGATCY	2 cut(s)	87, 161
BstYI	RGATCY	2 cut(s)	87, 161
Bsu15I	ATCGAT	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	3 cut(s)	367, 371, 441
Cfr10I	RCCGGY	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	204
CviJI	RGCY	5 cut(s)	83, 217, 355, 376, 420
CviKI_1	RGCY	5 cut(s)	83, 217, 355, 376, 420
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	3 cut(s)	89, 117, 163
DpnII	GATC	3 cut(s)	87, 115, 161
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	90, 204
FaiI	YATR	5 cut(s)	177, 233, 363, 405, 463
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	58, 374
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	2 cut(s)	58, 374
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	2 cut(s)	58, 374
HapII	CCGG	3 cut(s)	138, 255, 341
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	191, 247
HpaII	CCGG	3 cut(s)	138, 255, 341
HphI	GGTGA	2 cut(s)	194, 253
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	13, 44, 113
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	95, 437
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	4, 170, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	87, 115, 161
Lsp1109I	GCAGC	2 cut(s)	69, 385
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	448
MalI	GATC	3 cut(s)	89, 117, 163
MboI	GATC	3 cut(s)	87, 115, 161
MboII	GAAGA	4 cut(s)	43, 164, 191, 256
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	2 cut(s)	87, 161
MluCI	AATT	4 cut(s)	146, 264, 303, 333
MlyI	GAGTC	2 cut(s)	200, 241
MnlI	CCTC	9 cut(s)	40, 120, 207, 213, 218, 313, 322, 348, 406
MseI	TTAA	2 cut(s)	237, 306
MspI	CCGG	3 cut(s)	138, 255, 341
MspR9I	CCNGG	3 cut(s)	92, 206, 256
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	92, 206
MwoI	GCNNNNNNNGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	87, 115, 161
PaeR7I	CTCGAG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	59, 375
PleI	GAGTC	2 cut(s)	199, 241
PpsI	GAGTC	2 cut(s)	199, 241
Ppu21I	YACGTR	1 cut(s)	449
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	90, 204
PspGI	CCWGG	2 cut(s)	90, 204
PsuI	RGATCY	2 cut(s)	87, 161
SaqAI	TTAA	2 cut(s)	237, 306
SatI	GCNGC	2 cut(s)	58, 374
Sau3AI	GATC	3 cut(s)	87, 115, 161
SchI	GAGTC	2 cut(s)	200, 241
ScrFI	CCNGG	3 cut(s)	92, 206, 256
SetI	ASST	5 cut(s)	51, 207, 243, 378, 451
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	146, 264, 303, 333
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	90, 204, 254
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	45, 69
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	146, 264, 303, 333
Tru1I	TTAA	2 cut(s)	237, 306
Tru9I	TTAA	2 cut(s)	237, 306
TseI	GCWGC	2 cut(s)	57, 373
TspDTI	ATGAA	1 cut(s)	419
XapI	RAATTY	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.