Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Forward (+)

14980891 .. 14982500

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35635.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACTATAACCCTAGAAGTTGAGAGCAGCGACACCATCGACAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCCTCAGGCTCAGAGGTGGAACCATGATCAAGGTGAAGACACTCACTGGAAAAGAAATCGAGATTGATATCGAACCAACCGACACTATTGATCGGATCAAAGAACGTGTTGAAGAGAAAGAAGGCATCCCTCCTGTTCAACAAAGGCTCATATATGCCGGAAAACAGCTTGCTGATGACAAAACGGCCAAAGATTATGCGATAGAGGGAGGCTCTGTTCTTCATTTGGTTCTTGCTCTTAGGGGTGGTCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

5.77

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.4e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.8e-32	Ubiquitin family
ubiquitin	PF00240	79 - 149	2.4e-27	Ubiquitin family
Rad60-SLD	PF11976	79 - 147	1.1e-15	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	2 cut(s)	157, 393
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	320, 347
AjnI	CCWGG	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	2 cut(s)	170, 376
AluI	AGCT	2 cut(s)	170, 376
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	157, 393
ApeKI	GCWGC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	16, 253
AvaII	GGWCC	1 cut(s)	162
AxyI	CCTNAGG	1 cut(s)	212
BbsI	GAAGAC	2 cut(s)	251, 449
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	74, 149
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	92
BclI	TGATCA	2 cut(s)	115, 234
BfaI	CTAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	251, 449
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu10I	CCTNAGC	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	259
Bse21I	CCTNAGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	180, 333
BseJI	GATNNNNATC	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	226, 232
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	2 cut(s)	159, 395
BsiSI	CCGG	3 cut(s)	27, 160, 366
BsnI	GGCC	2 cut(s)	159, 395
Bsp143I	GATC	5 cut(s)	6, 115, 234, 298, 303
BspANI	GGCC	2 cut(s)	159, 395
BspCNI	CTCAG	2 cut(s)	225, 231
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	5 cut(s)	6, 115, 234, 298, 303
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	204, 315
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	4 cut(s)	166, 212, 218, 446
BstF5I	GGATG	2 cut(s)	180, 333
BstKTI	GATC	5 cut(s)	9, 118, 237, 301, 306
BstMBI	GATC	5 cut(s)	6, 115, 234, 298, 303
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	251, 449
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	159, 395
BtsCI	GGATG	2 cut(s)	180, 333
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	162
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	83, 127, 159, 170, 217, 355, 376, 395, 420
CviKI_1	RGCY	9 cut(s)	83, 127, 159, 170, 217, 355, 376, 395, 420
DdeI	CTNAG	4 cut(s)	166, 212, 218, 446
DpnI	GATC	5 cut(s)	8, 117, 236, 300, 305
DpnII	GATC	5 cut(s)	6, 115, 234, 298, 303
EaeI	YGGCCR	2 cut(s)	157, 393
Eam1104I	CTCTTC	2 cut(s)	204, 315
EarI	CTCTTC	2 cut(s)	204, 315
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	1 cut(s)	235
FaiI	YATR	7 cut(s)	38, 107, 233, 359, 361, 363, 405
FatI	CATG	1 cut(s)	231
FbaI	TGATCA	2 cut(s)	115, 234
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	2 cut(s)	167, 320
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	159, 395
HapII	CCGG	3 cut(s)	27, 160, 366
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	3 cut(s)	27, 160, 366
HphI	GGTGA	2 cut(s)	16, 253
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	221, 303, 464
Hpy188III	TCNNGA	2 cut(s)	184, 268
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	4 cut(s)	166, 212, 218, 446
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	1 cut(s)	235
Ksp22I	TGATCA	2 cut(s)	115, 234
Kzo9I	GATC	5 cut(s)	6, 115, 234, 298, 303
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	313
MalI	GATC	5 cut(s)	8, 117, 236, 300, 305
MboI	GATC	5 cut(s)	6, 115, 234, 298, 303
MboII	GAAGA	6 cut(s)	164, 191, 256, 332, 419, 449
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	8 cut(s)	32, 94, 117, 215, 221, 348, 406, 410
MseI	TTAA	1 cut(s)	78
MspI	CCGG	3 cut(s)	27, 160, 366
MspR9I	CCNGG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	92
NdeII	GATC	5 cut(s)	6, 115, 234, 298, 303
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	5 cut(s)	6, 115, 234, 298, 303
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	7 cut(s)	115, 167, 172, 226, 243, 316, 378
SfaNI	GCATC	1 cut(s)	342
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	3 cut(s)	69, 267, 279
TasI	AATT	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	191, 419
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.