Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Reverse (-)

25856695 .. 25859679

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGATCGTACAGTCTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCTTGGAATGACGGATTCCGAACCCGAAACCGCCAGGTGTCTAGTTCAATTCAACGAGTTTCAGCCTTTTGTTTCGAGAATTCACTATTACATTGAGAAAGATAAATTTTGTGCTCTTGTTGTTGTAGATGCCGGGCAAGGATCTTTTGGTCGTTGTTTCGGATTCCGGGAAGCTCTCGATGGTAGAACTCTAGCAGATTATAACATCCAAAAGGAGTCAACTCTTCACCTGGTTTTGAGGCTGAGGGGAGGAACTATGATTAAGGTGAAGGCTCTTACTGGGAAAGAAATTGAGATTGATATAGACCCAATTGACACCATTGGCCTAATCAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCTTCCGGTGCAACAAAGGCTGATTTATGCTGGCAAGCAGCTTGGAGATGACAAAACTGCTAAAGACTATAACATTGAGGGTGGCTCTGTCCTTCATCTAGTGCTTGCACTACGTGGTGGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

184

Amino Acids

20.36

Weight (kDa)

5.95

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	109 - 179	6.9e-24	Ubiquitin family
Rad60-SLD	PF11976	109 - 177	5.9e-12	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AasI	GACNNNNNNGTC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	2 cut(s)	13, 214
AcsI	RAATTY	3 cut(s)	144, 170, 423
AdeI	CACNNNGTG	1 cut(s)	539
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	37, 397
AgsI	TTSAA	2 cut(s)	113, 118
AjnI	CCWGG	2 cut(s)	98, 294
AluBI	AGCT	2 cut(s)	239, 466
AluI	AGCT	2 cut(s)	239, 466
Alw21I	GWGCWC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	13, 214
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	27, 463
ApoI	RAATTY	3 cut(s)	144, 170, 423
AsuC2I	CCSGG	2 cut(s)	199, 233
AsuHPI	GGTGA	2 cut(s)	284, 343
BanI	GGYRCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	39, 475
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	100, 296
BcnI	CCSGG	2 cut(s)	199, 233
BfaI	CTAG	3 cut(s)	107, 257, 524
BisI	GCNGC	2 cut(s)	28, 464
BlsI	GCNGC	2 cut(s)	29, 465
Bme1390I	CCNGG	4 cut(s)	100, 199, 233, 296
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	4 cut(s)	100, 199, 233, 296
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
Bpu10I	CCTNAGC	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	199, 233
BsaAI	YACGTR	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 397
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	100, 296
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	37, 397
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	39, 475
BshFI	GGCC	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	198, 232, 431
BslI	CCNNNNNNNGG	2 cut(s)	37, 397
BsnI	GGCC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	5, 206
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	2 cut(s)	13, 214
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	5, 206
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	100, 296
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	457, 461, 531
BstDEI	CTNAG	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	8, 209
BstMBI	GATC	2 cut(s)	5, 206
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	2 cut(s)	100, 296
BstSCI	CCNGG	4 cut(s)	98, 197, 231, 294
BstV1I	GCAGC	2 cut(s)	39, 475
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	270
Cac8I	GCNNGC	3 cut(s)	457, 461, 531
CsiI	ACCWGGT	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	9 cut(s)	30, 130, 239, 307, 338, 390, 445, 466, 510
CviKI_1	RGCY	9 cut(s)	30, 130, 239, 307, 338, 390, 445, 466, 510
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	7, 208
DpnII	GATC	2 cut(s)	5, 206
DraIII	CACNNNGTG	1 cut(s)	539
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRI	GAATTC	2 cut(s)	144, 423
EcoRII	CCWGG	2 cut(s)	98, 294
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaiI	YATR	6 cut(s)	267, 323, 368, 453, 495, 553
Fnu4HI	GCNGC	2 cut(s)	28, 464
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	28, 464
FspBI	CTAG	3 cut(s)	107, 257, 524
GluI	GCNGC	2 cut(s)	28, 464
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	3 cut(s)	198, 232, 431
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	80, 228, 281
HpaII	CCGG	3 cut(s)	198, 232, 431
HphI	GGTGA	2 cut(s)	284, 343
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	85, 227
Hpy188III	TCNNGA	2 cut(s)	141, 242
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	328, 527
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	2 cut(s)	436, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	5, 206
Lsp1109I	GCAGC	2 cut(s)	39, 475
LweI	GCATC	1 cut(s)	184
MabI	ACCWGGT	1 cut(s)	294
MaeI	CTAG	3 cut(s)	107, 257, 524
MaeII	ACGT	1 cut(s)	538
MalI	GATC	2 cut(s)	7, 208
MboI	GATC	2 cut(s)	5, 206
MboII	GAAGA	2 cut(s)	281, 419
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	6 cut(s)	113, 144, 170, 354, 375, 423
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	297, 303, 308, 403, 412, 496
MseI	TTAA	2 cut(s)	47, 327
MspI	CCGG	3 cut(s)	198, 232, 431
MspR9I	CCNGG	4 cut(s)	100, 199, 233, 296
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	2 cut(s)	100, 296
MwoI	GCNNNNNNNGC	1 cut(s)	442
NciI	CCSGG	2 cut(s)	199, 233
NdeII	GATC	2 cut(s)	5, 206
NlaIV	GGNNCC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	80, 228
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	29, 465
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	539
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	98, 294
PspGI	CCWGG	2 cut(s)	98, 294
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	47, 327
SatI	GCNGC	2 cut(s)	28, 464
Sau3AI	GATC	2 cut(s)	5, 206
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	4 cut(s)	100, 199, 233, 296
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	7 cut(s)	69, 104, 241, 297, 333, 468, 541
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	184
Sse9I	AATT	6 cut(s)	113, 144, 170, 354, 375, 423
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	3 cut(s)	107, 257, 524
StyD4I	CCNGG	4 cut(s)	98, 197, 231, 294
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	2 cut(s)	140, 243
TasI	AATT	6 cut(s)	113, 144, 170, 354, 375, 423
TfiI	GAWTC	2 cut(s)	80, 228
Tru1I	TTAA	2 cut(s)	47, 327
Tru9I	TTAA	2 cut(s)	47, 327
TseI	GCWGC	2 cut(s)	27, 463
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	3 cut(s)	144, 170, 423
XspI	CTAG	3 cut(s)	107, 257, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.