Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Reverse (-)

7554901 .. 7557648

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCAGATTTTCGTGAAAACCGTAACTGGAAAGACCATCACTCTTGAGGTTGAGAGCAGTGACACCATCGACAATGATAAGGAAGGCATCCCTCCTGACCAACAACGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGATGCTTCACTTGGTTTTGAGGCTGAGGGGAGGAACTATGATTAAGGTGAAAACTCTTACTGGGAAAGAAATTGAGATTGACATCGAACCAAATGATACCATTGACCGGATCAAGGAAAGGGTTGAGGAGAAAAAGGGAATCCCCCTGCAACAAAGGCTTATTTATGCTGGGAAGCAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATTGATGGTGGCTCTGTCCATCATCTGGTGCTTGCTCTAGAGGTGGCAATCTTTAAGTATATTTATCGGTTTCAAGCTCAGAGCTGCCTTTTAGCAAAGGCCCAAGGGGCGATGGTTTCAAATCTGGGGAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

6.84

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	412
AclWI	GGATC	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	282, 289, 412
AgsI	TTSAA	2 cut(s)	461, 507
AluBI	AGCT	4 cut(s)	355, 374, 464, 471
AluI	AGCT	4 cut(s)	355, 374, 464, 471
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	486, 519
ApeKI	GCWGC	2 cut(s)	352, 471
AspS9I	GGNCC	2 cut(s)	487, 519
AsuHPI	GGTGA	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	364, 458
BccI	CCATC	6 cut(s)	44, 74, 131, 386, 414, 493
BfaI	CTAG	1 cut(s)	425
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	2 cut(s)	353, 472
BlsI	GCNGC	2 cut(s)	354, 473
BmgT120I	GGNCC	2 cut(s)	487, 519
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	96, 168
BmuI	ACTGGG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	490
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 289, 412
Bse1I	ACTGG	2 cut(s)	31, 241
Bse8I	GATNNNNATC	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	2 cut(s)	87, 162
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	3 cut(s)	282, 289, 412
BseMII	CTCAG	2 cut(s)	191, 479
BseNI	ACTGG	2 cut(s)	31, 241
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	364, 458
BseYI	CCCAGC	1 cut(s)	344
BshFI	GGCC	2 cut(s)	488, 521
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	282, 289, 412
BsnI	GGCC	2 cut(s)	488, 521
Bsp143I	GATC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	488, 521
BspCNI	CTCAG	2 cut(s)	192, 478
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	31, 241
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	200, 465
BstF5I	GGATG	2 cut(s)	87, 162
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 494
BstV1I	GCAGC	2 cut(s)	364, 458
BsuRI	GGCC	2 cut(s)	488, 521
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	87, 162
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	487, 519
CviJI	RGCY	9 cut(s)	199, 334, 355, 374, 399, 464, 471, 488, 521
CviKI_1	RGCY	9 cut(s)	199, 334, 355, 374, 399, 464, 471, 488, 521
DdeI	CTNAG	2 cut(s)	200, 465
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaiI	YATR	4 cut(s)	159, 215, 342, 447
Fnu4HI	GCNGC	2 cut(s)	353, 472
FokI	GGATG	2 cut(s)	74, 149
Fsp4HI	GCNGC	2 cut(s)	353, 472
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	353, 472
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	488, 521
HapII	CCGG	1 cut(s)	283
HinfI	GANTC	2 cut(s)	173, 315
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	468
Hpy188III	TCNNGA	4 cut(s)	13, 44, 95, 425
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	4, 152, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 494
HpyF3I	CTNAG	2 cut(s)	200, 465
Kzo9I	GATC	1 cut(s)	285
LpnPI	CCDG	9 cut(s)	12, 105, 108, 222, 296, 330, 335, 398, 497
Lsp1109I	GCAGC	2 cut(s)	364, 458
LweI	GCATC	2 cut(s)	96, 168
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	22, 59
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	1 cut(s)	146
MfeI	CAATTG	1 cut(s)	128
MluCI	AATT	2 cut(s)	128, 246
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	8 cut(s)	40, 102, 189, 195, 200, 295, 421, 510
MseI	TTAA	2 cut(s)	219, 441
MspI	CCGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	331, 494
NdeII	GATC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	354, 473
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	487, 519
SaqAI	TTAA	2 cut(s)	219, 441
SatI	GCNGC	2 cut(s)	353, 472
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	487, 519
SchI	GAGTC	1 cut(s)	182
SetI	ASST	7 cut(s)	51, 225, 357, 376, 432, 466, 473
SfaNI	GCATC	2 cut(s)	96, 168
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	128, 246
SspMI	CTAG	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	69, 142, 176, 261
TasI	AATT	2 cut(s)	128, 246
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	219, 441
Tru9I	TTAA	2 cut(s)	219, 441
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	352, 471
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	412
XbaI	TCTAGA	1 cut(s)	424
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.