Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Forward (+)

24011648 .. 24012847

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTATAATGTGAAATTTTATGATCAAACATGCCATGTATTATACCCTTGTTTTCAGGATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGAAGGCAGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACTCTTCACCTGGTTTTGAGGCTGAGGGGAGGAACTATGATTAAGGTGAATGCTCTTACCGGGAAAGAAATTGAGATTGATATTGAACCGACTGACACCATTGACCGAATGAAGGAAAAGGTTAAGGAGAAAGAGGGAATTCCTCCGGTGCAACAGAGGCTGATTTATGCTGGCAAGCAGCTTGGAGATGACAAAACTGCTAAAGACTACAACATTGAGGGTGGCTCTGTCTTTCATCTAGTGCTTGCACTACGTGGTGGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

142

Amino Acids

16.09

Weight (kDa)

6.3

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	10 - 59	3.2e-11	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	19 - 62	3.4e-17	Ubiquitin family
ubiquitin	PF00240	67 - 137	5.9e-25	Ubiquitin family
Rad60-SLD	PF11976	67 - 135	4e-15	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	14, 297
AdeI	CACNNNGTG	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
AlwNI	CAGNNNCTG	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	14, 297
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	158, 217
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	2 cut(s)	22, 79
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	398
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	170, 220
BmrFI	CCNGG	2 cut(s)	170, 220
BmsI	GCATC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
Bpu10I	CCTNAGC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	69, 144
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	349
BsiSI	CCGG	3 cut(s)	102, 219, 305
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	22, 79
BspCNI	CTCAG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	2 cut(s)	22, 79
Bst2UI	CCWGG	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	331, 335, 405
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	69, 144
BstKTI	GATC	2 cut(s)	25, 82
BstMBI	GATC	2 cut(s)	22, 79
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	168, 218
BstV1I	GCAGC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	69, 144
Cac8I	GCNNGC	3 cut(s)	331, 335, 405
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	168
CviAII	CATG	2 cut(s)	30, 35
CviJI	RGCY	4 cut(s)	181, 319, 340, 384
CviKI_1	RGCY	4 cut(s)	181, 319, 340, 384
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	24, 81
DpnII	GATC	2 cut(s)	22, 79
DraIII	CACNNNGTG	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	33, 38
FaiI	YATR	9 cut(s)	6, 21, 31, 36, 43, 141, 197, 327, 427
FatI	CATG	2 cut(s)	29, 34
FbaI	TGATCA	2 cut(s)	22, 79
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	56, 131
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	1 cut(s)	338
HapII	CCGG	3 cut(s)	102, 219, 305
Hin1II	CATG	2 cut(s)	33, 38
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	3 cut(s)	102, 219, 305
HphI	GGTGA	2 cut(s)	158, 217
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	56, 77
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	3 cut(s)	59, 113, 265
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	3 cut(s)	134, 310, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	33, 38
Ksp22I	TGATCA	2 cut(s)	22, 79
Kzo9I	GATC	2 cut(s)	22, 79
LpnPI	CCDG	8 cut(s)	41, 90, 115, 155, 182, 232, 315, 318
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	78
MabI	ACCWGGT	1 cut(s)	168
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	412
MalI	GATC	2 cut(s)	24, 81
MboI	GATC	2 cut(s)	22, 79
MboII	GAAGA	2 cut(s)	128, 155
MfeI	CAATTG	1 cut(s)	110
MluCI	AATT	4 cut(s)	14, 110, 228, 297
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	84, 171, 177, 182, 286, 309, 312, 370
MseI	TTAA	2 cut(s)	201, 282
MspI	CCGG	3 cut(s)	102, 219, 305
MspR9I	CCNGG	2 cut(s)	170, 220
MunI	CAATTG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	22, 79
NlaIII	CATG	2 cut(s)	33, 38
NspI	RCATGY	1 cut(s)	33
PctI	GAATGC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	319
SaqAI	TTAA	2 cut(s)	201, 282
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	22, 79
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	170, 220
SetI	ASST	5 cut(s)	171, 207, 282, 342, 415
SexAI	ACCWGGT	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	78
Sse9I	AATT	4 cut(s)	14, 110, 228, 297
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	168, 218
TaiI	ACGT	1 cut(s)	415
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	14, 110, 228, 297
Tru1I	TTAA	2 cut(s)	201, 282
Tru9I	TTAA	2 cut(s)	201, 282
TseI	GCWGC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	284, 383
XapI	RAATTY	2 cut(s)	14, 297
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.