Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

11966423 .. 11967843

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCAGGAGCAATTGTGGAGGAAGAGAAATCTCAGATTGAATCCATCAAAGAGCAATTGAAACTCGAGAAGGAAGATGATGTTGTTGTGGAGGATGTGAAAGACGGAGAGGAAGAAGACGATGATGAAGACGATGAGGACGTCGAAGTTGAAGGGGAAGGTGGAAATGAGAATGCAAAGCAAAGTAGAAGCGAGAAGAAAAGTCGCAAAGCTGTTCTAAAGCTTGGCATGAAACCTGTCTCAGATGTCAGCAGAGTGACAATCAAAAGAGCCAAGAATGTGTTATTTGTCATCTCGAAGCCAGATGTTTACAAGAGTCCCAATGCAGAGACTTACGTCATTTTTGGAGAGGCCAAGGTCGACGATTTGAGCTCTCAGCTACAGACTCAAGCTGCTCAGAGGTTTAAGATGCCTGATGTGACATCCATGCTACCTAACGCCGGTTCTGAAGCTACCATGGCTCCACTAGCAGAGGAAGAAGACGAAGACGATGTTGATGACACTGGTGTTGAAGCCAGAGACATTGATCTTGTCATGACCCAAGCAGGTGTCTCCAAGGCCAAAGCCGTCAGTGCTCTAAAGGCTAATGATGGGGATATCGTTTCAGCCATTATGGAACTCACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

209

Amino Acids

22.78

Weight (kDa)

4.29

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	65 - 120	2.2e-22	NAC domain
UBA_HYPK	PF19026	169 - 208	1.1e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
AatII	GACGTC	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	4 cut(s)	41, 61, 152, 512
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	6 cut(s)	212, 223, 372, 379, 392, 452
AluI	AGCT	6 cut(s)	212, 223, 372, 379, 392, 452
Alw21I	GWGCWC	2 cut(s)	374, 577
Alw26I	GTCTC	4 cut(s)	244, 323, 513, 556
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	351, 558
ApeKI	GCWGC	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	374
BbsI	GAAGAC	4 cut(s)	123, 135, 486, 492
Bbv12I	GWGCWC	2 cut(s)	374, 577
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	53, 584
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	4 cut(s)	244, 323, 513, 556
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	399
BoxI	GACNNNNGTC	1 cut(s)	335
BpiI	GAAGAC	4 cut(s)	123, 135, 486, 492
BpuEI	CTTGAG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	354, 456, 555
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	354, 456, 555
BseGI	GGATG	2 cut(s)	100, 422
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	4 cut(s)	47, 255, 389, 410
BseNI	ACTGG	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	353, 560
BsiHKAI	GWGCWC	2 cut(s)	374, 577
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	4 cut(s)	244, 323, 513, 556
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	353, 560
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	374, 577
Bsp143I	GATC	1 cut(s)	526
Bsp19I	CCATGG	1 cut(s)	456
BspANI	GGCC	2 cut(s)	353, 560
BspCNI	CTCAG	4 cut(s)	46, 254, 388, 409
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	3 cut(s)	354, 456, 555
BssMI	GATC	1 cut(s)	526
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	3 cut(s)	354, 456, 555
Bst2UI	CCWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	141
BstDEI	CTNAG	4 cut(s)	33, 241, 375, 396
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	100, 422
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	4 cut(s)	244, 323, 513, 556
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 467, 572, 581
BstNI	CCWGG	1 cut(s)	6
BstPAI	GACNNNNGTC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	4 cut(s)	123, 135, 486, 492
BsuRI	GGCC	2 cut(s)	353, 560
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	100, 422
BtsIMutI	CAGTG	2 cut(s)	501, 577
BveI	ACCTGC	1 cut(s)	536
CciI	TCATGA	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	440
CviAII	CATG	4 cut(s)	229, 427, 457, 535
DdeI	CTNAG	4 cut(s)	33, 241, 375, 396
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	3 cut(s)	354, 456, 555
Eco24I	GRGCYC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	3 cut(s)	354, 456, 555
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	3 cut(s)	354, 456, 555
FaeI	CATG	4 cut(s)	232, 430, 460, 538
FaiI	YATR	6 cut(s)	230, 428, 458, 536, 614, 628
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	4 cut(s)	228, 426, 456, 534
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	107, 409
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	353, 560
HapII	CCGG	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	232, 430, 460, 538
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	41, 316, 385
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	2 cut(s)	310, 361
Hpy188I	TCNGA	4 cut(s)	36, 244, 399, 448
Hpy188III	TCNNGA	3 cut(s)	67, 295, 535
Hpy8I	GTNNAC	2 cut(s)	310, 361
Hpy99I	CGWCG	2 cut(s)	146, 365
HpyAV	CCTTC	3 cut(s)	64, 146, 152
HpyCH4IV	ACGT	2 cut(s)	141, 336
HpyCH4V	TGCA	2 cut(s)	176, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 467, 572, 581
HpyF3I	CTNAG	4 cut(s)	33, 241, 375, 396
HpySE526I	ACGT	2 cut(s)	141, 336
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	232, 430, 460, 538
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	2 cut(s)	8, 466
LpnPI	CCDG	8 cut(s)	18, 249, 315, 426, 454, 489, 529, 531
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	141, 336
MaeIII	GTNAC	2 cut(s)	256, 418
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	9 cut(s)	35, 86, 125, 128, 140, 208, 488, 491, 497
MfeI	CAATTG	2 cut(s)	12, 56
MhlI	GDGCHC	2 cut(s)	374, 577
MluCI	AATT	2 cut(s)	12, 56
MlyI	GAGTC	2 cut(s)	325, 379
MnlI	CCTC	7 cut(s)	13, 85, 103, 130, 343, 393, 466
MseI	TTAA	1 cut(s)	405
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	2 cut(s)	12, 56
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	4 cut(s)	458, 467, 572, 581
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	4 cut(s)	232, 430, 460, 538
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	256, 418
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	534
PaqCI	CACCTGC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	2 cut(s)	324, 379
PpsI	GAGTC	2 cut(s)	324, 379
PshAI	GACNNNNGTC	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	374
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	526
SchI	GAGTC	2 cut(s)	325, 379
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	374, 577
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	380
Sfr274I	CTCGAG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	65, 387
SmoI	CTYRAG	2 cut(s)	65, 387
Sse9I	AATT	2 cut(s)	12, 56
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	3 cut(s)	354, 456, 555
TaiI	ACGT	2 cut(s)	144, 339
TaqI	TCGA	4 cut(s)	66, 144, 296, 360
TasI	AATT	2 cut(s)	12, 56
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	508, 577
TseFI	GTSAC	2 cut(s)	256, 418
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	256, 418
TspDTI	ATGAA	2 cut(s)	141, 245
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	508, 577
XhoI	CTCGAG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	467
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.