Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

27135662 .. 27136968

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCACCGGCTCCACTGGTTCAACCGGAGTGCGCCGCCGACGAGGTCACCTCTGTCGAGCAGCTCCTCAAGAGCTCTAATCCGAACAAGGATGAAGACGAAGTGGTGGTTGAGGACGTGAAGGACGACAATGACAAGGACGAGGACGAGGACGATGAGGACGATGACGAGGACGACGATGATAAGGAAGACGGCGGTCAAGGTGGAGGTGAGGCTTCGAAGCAGAGTAGAAGTGAGAAGAAGAGTCGAAAGGCAATGTTGAAGCTTGGTATGAAGCCTGTAACGGGCGTTAGTAGGGTTACCATCAAGAGGACCAAAAACATACTATTTTTCATCTCGAAACCTGATGTGTTCAAGAGTCCGAACTCTGACACCTATGTCATATTTGGCGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCTCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGATGGGGAAACCAGAGATTTCGGCAGCAGCTGCTGGAGCTCAGGACGAAGAAGAGGAAGAGGTTGATGAAACCGGGGTGGAACCTAGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCGAGGAGCAAGGCCGTCAAGGCACTCAAGACTCACAGCGGGGACATTGTCAGCGCTATCATGGAGCTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

223

Amino Acids

24.17

Weight (kDa)

4.31

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AciI	CCGC	3 cut(s)	36, 195, 630
AfeI	AGCGCT	1 cut(s)	646
AfiI	CCNNNNNNNGG	2 cut(s)	284, 309
AgsI	TTSAA	3 cut(s)	23, 262, 355
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	8 cut(s)	64, 75, 265, 414, 421, 500, 509, 658
AluI	AGCT	8 cut(s)	64, 75, 265, 414, 421, 500, 509, 658
Alw21I	GWGCWC	4 cut(s)	77, 416, 511, 660
AlwNI	CAGNNNCTG	2 cut(s)	500, 503
Aor51HI	AGCGCT	1 cut(s)	646
AoxI	GGCC	2 cut(s)	393, 603
ApeKI	GCWGC	6 cut(s)	61, 421, 434, 494, 497, 500
AspA2I	CCTAGG	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	35, 647
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	3 cut(s)	40, 221, 652
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	312
AvrII	CCTAGG	1 cut(s)	554
BanII	GRGCYC	4 cut(s)	77, 416, 511, 660
BbsI	GAAGAC	2 cut(s)	102, 195
Bbv12I	GWGCWC	4 cut(s)	77, 416, 511, 660
BbvI	GCAGC	6 cut(s)	73, 408, 421, 487, 506, 509
BccI	CCATC	2 cut(s)	311, 466
BceAI	ACGGC	2 cut(s)	208, 590
BcnI	CCSGG	1 cut(s)	544
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	648
BglI	GCCNNNNNGGC	1 cut(s)	611
BisI	GCNGC	7 cut(s)	36, 62, 422, 435, 495, 498, 501
BlnI	CCTAGG	1 cut(s)	554
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	7 cut(s)	37, 63, 423, 436, 496, 499, 502
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	312
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	12, 552
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	441
BoxI	GACNNNNGTC	1 cut(s)	195
BpiI	GAAGAC	2 cut(s)	102, 195
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	510
Bpu1102I	GCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	2 cut(s)	53, 602
BpuMI	CCSGG	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	543, 554
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 309
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	543, 554
BseGI	GGATG	2 cut(s)	97, 456
BseLI	CCNNNNNNNGG	2 cut(s)	284, 309
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	431, 452, 524
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	2 cut(s)	56, 610
BseXI	GCAGC	6 cut(s)	73, 408, 421, 487, 506, 509
BseYI	CCCAGC	1 cut(s)	584
BshFI	GGCC	2 cut(s)	395, 605
BsiHKAI	GWGCWC	4 cut(s)	77, 416, 511, 660
BsiSI	CCGG	3 cut(s)	8, 26, 543
BslFI	GGGAC	2 cut(s)	572, 647
BslI	CCNNNNNNNGG	2 cut(s)	284, 309
BsmFI	GGGAC	2 cut(s)	572, 647
BsnI	GGCC	2 cut(s)	395, 605
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	4 cut(s)	77, 416, 511, 660
Bsp143I	GATC	1 cut(s)	399
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	3 cut(s)	36, 195, 630
BspANI	GGCC	2 cut(s)	395, 605
BspCNI	CTCAG	3 cut(s)	430, 451, 523
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	12, 552
BspMAI	CTGCAG	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	543, 554
BssMI	GATC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	554
Bst6I	CTCTTC	3 cut(s)	236, 516, 522
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	417, 438, 510
BstEII	GGTNACC	2 cut(s)	46, 298
BstF5I	GGATG	2 cut(s)	97, 456
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	2 cut(s)	35, 647
BstKTI	GATC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	3 cut(s)	500, 506, 611
BstPAI	GACNNNNGTC	1 cut(s)	195
BstPI	GGTNACC	2 cut(s)	46, 298
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	6 cut(s)	73, 408, 421, 487, 506, 509
BstV2I	GAAGAC	2 cut(s)	102, 195
BsuRI	GGCC	2 cut(s)	395, 605
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	97, 456
BtsIMutI	CAGTG	1 cut(s)	14
CaiI	CAGNNNCTG	2 cut(s)	500, 503
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	2 cut(s)	35, 647
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	312
CviAII	CATG	3 cut(s)	460, 574, 652
DdeI	CTNAG	3 cut(s)	417, 438, 510
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	3 cut(s)	236, 516, 522
EarI	CTCTTC	3 cut(s)	236, 516, 522
Ecl136II	GAGCTC	4 cut(s)	75, 414, 509, 658
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	4 cut(s)	77, 416, 511, 660
Eco47I	GGWCC	1 cut(s)	312
Eco47III	AGCGCT	1 cut(s)	646
Eco53kI	GAGCTC	4 cut(s)	75, 414, 509, 658
Eco91I	GGTNACC	2 cut(s)	46, 298
EcoICRI	GAGCTC	4 cut(s)	75, 414, 509, 658
EcoO65I	GGTNACC	2 cut(s)	46, 298
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	4 cut(s)	77, 416, 511, 660
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	3 cut(s)	463, 577, 655
FaiI	YATR	7 cut(s)	272, 323, 378, 383, 461, 575, 653
FaqI	GGGAC	2 cut(s)	572, 647
FatI	CATG	3 cut(s)	459, 573, 651
FauI	CCCGC	1 cut(s)	623
Fnu4HI	GCNGC	7 cut(s)	36, 62, 422, 435, 495, 498, 501
FokI	GGATG	2 cut(s)	104, 463
FriOI	GRGCYC	4 cut(s)	77, 416, 511, 660
Fsp4HI	GCNGC	7 cut(s)	36, 62, 422, 435, 495, 498, 501
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	2 cut(s)	34, 646
GluI	GCNGC	7 cut(s)	36, 62, 422, 435, 495, 498, 501
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	395, 605
HapII	CCGG	3 cut(s)	8, 26, 543
HhaI	GCGC	2 cut(s)	35, 647
Hin1II	CATG	3 cut(s)	463, 577, 655
Hin6I	GCGC	2 cut(s)	33, 645
HinP1I	GCGC	2 cut(s)	33, 645
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	3 cut(s)	244, 358, 622
HpaII	CCGG	3 cut(s)	8, 26, 543
HphI	GGTGA	3 cut(s)	40, 221, 652
Hpy188I	TCNGA	3 cut(s)	84, 363, 370
Hpy188III	TCNNGA	8 cut(s)	70, 307, 337, 355, 448, 512, 574, 619
Hpy99I	CGWCG	2 cut(s)	44, 179
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	3 cut(s)	500, 506, 611
HpyF3I	CTNAG	3 cut(s)	417, 438, 510
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	463, 577, 655
HspAI	GCGC	2 cut(s)	33, 645
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	5 cut(s)	16, 69, 506, 597, 655
Lsp1109I	GCAGC	6 cut(s)	73, 408, 421, 487, 506, 509
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	4 cut(s)	3, 46, 280, 298
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	7 cut(s)	107, 200, 250, 253, 530, 533, 539
MhlI	GDGCHC	4 cut(s)	77, 416, 511, 660
MlyI	GAGTC	3 cut(s)	253, 367, 616
MseI	TTAA	1 cut(s)	667
MspA1I	CMGCKG	3 cut(s)	421, 500, 630
MspI	CCGG	3 cut(s)	8, 26, 543
MspR9I	CCNGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	3 cut(s)	500, 506, 611
NciI	CCSGG	1 cut(s)	544
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	3 cut(s)	463, 577, 655
NlaIV	GGNNCC	2 cut(s)	12, 552
NmuCI	GTSAC	2 cut(s)	3, 46
NspV	TTCGAA	1 cut(s)	218
PagI	TCATGA	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 159, 174
PflFI	GACNNNGTC	2 cut(s)	44, 638
PkrI	GCNGC	7 cut(s)	37, 63, 423, 436, 496, 499, 502
PleI	GAGTC	3 cut(s)	252, 366, 616
PpsI	GAGTC	3 cut(s)	252, 366, 616
PshAI	GACNNNNGTC	1 cut(s)	195
Psp124BI	GAGCTC	4 cut(s)	77, 416, 511, 660
PspEI	GGTNACC	2 cut(s)	46, 298
PspFI	CCCAGC	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	12, 552
PspPI	GGNCC	1 cut(s)	312
PstI	CTGCAG	1 cut(s)	426
PstNI	CAGNNNCTG	2 cut(s)	500, 503
PsyI	GACNNNGTC	2 cut(s)	44, 638
PvuII	CAGCTG	2 cut(s)	421, 500
SacI	GAGCTC	4 cut(s)	77, 416, 511, 660
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	7 cut(s)	36, 62, 422, 435, 495, 498, 501
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	3 cut(s)	253, 367, 616
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	4 cut(s)	77, 416, 511, 660
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	68, 617
SmoI	CTYRAG	2 cut(s)	68, 617
SsiI	CCGC	3 cut(s)	36, 195, 630
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	4 cut(s)	77, 416, 511, 660
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	554
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	6 cut(s)	57, 218, 247, 338, 402, 593
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	3, 46
TseI	GCWGC	6 cut(s)	61, 421, 434, 494, 497, 500
Tsp45I	GTSAC	2 cut(s)	3, 46
TspDTI	ATGAA	4 cut(s)	108, 287, 322, 552
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	2 cut(s)	44, 638
VpaK11BI	GGWCC	1 cut(s)	312
XmaJI	CCTAGG	1 cut(s)	554
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.