Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

31876706 .. 31878484

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1229400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCACCGGCTCCACTGGTTGAGCCCGAAGCCGTCGCCGCCGAAGAGGTTGTCTCCGGCGACCAGCTTCTCAAGAACTCTAATCAGACCAAGGAAGAAGAGGAAGTCGTGGTCGAGGACGTCAAGGACGACGACAAGGACGAGGACGAGGACGATGAGGACGACGATGATGACGACGATGATGACAAGGAAGACGGCGGTCAAGGTGGAAATGAGTCATCGAAACAGAGCAGAAGCGAGAAGAAGAGTCGGAAGGCAATGCTGAAGCTGGGTATGAAGCCTGTTACTGGTGTTAGCAGGGTTACAATCAAGAAGACCAAAAACATGCTGTTTGTTATATCGAAACCCGATGCCTTCAAGAGTCCAAACTCCGATACCTATGTGATATTTGGCGAGGCCAAGATTGAGGATTTGAGCTCTCAGCTGCAGACACAAGCTGCCCAGCAGTTCAGGATGCCGGACATGAGTTCTGTGATGGGGAAACCAGAGATTTCTGGAGCAGCTGCCGGACCTCAGGCAGATGAAGAAGAGGAAGAGGTTGATGAAACCGGGGTGGAACCTAAGGACATTGATTTGGTCATGACACAGGCCGGGGTGTCAAGGAGCAAAGCTGTCAAGGCTCTCAAGACTCACAGCGGGGACATTGTCAGCGCCATCATGGAGCTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

225

Amino Acids

24.3

Weight (kDa)

4.28

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	80 - 135	8.1e-22	NAC domain
UBA_HYPK	PF19026	184 - 223	6e-13	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
AciI	CCGC	3 cut(s)	39, 198, 636
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	358
AluBI	AGCT	8 cut(s)	67, 268, 417, 424, 437, 503, 611, 664
AluI	AGCT	8 cut(s)	67, 268, 417, 424, 437, 503, 611, 664
Alw21I	GWGCWC	2 cut(s)	419, 666
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	396, 588
ApeKI	GCWGC	4 cut(s)	424, 437, 500, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	509
AsuC2I	CCSGG	2 cut(s)	550, 592
AsuHPI	GGTGA	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	509
AxyI	CCTNAGG	2 cut(s)	513, 561
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BanII	GRGCYC	3 cut(s)	27, 419, 666
BbsI	GAAGAC	2 cut(s)	198, 320
Bbv12I	GWGCWC	2 cut(s)	419, 666
BbvI	GCAGC	4 cut(s)	411, 424, 490, 512
BccI	CCATC	2 cut(s)	469, 662
BceAI	ACGGC	2 cut(s)	17, 211
BcnI	CCSGG	2 cut(s)	550, 592
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	654
BisI	GCNGC	5 cut(s)	39, 425, 438, 501, 504
BlsI	GCNGC	5 cut(s)	40, 426, 439, 502, 505
Bme1390I	CCNGG	2 cut(s)	550, 592
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	12, 558
BmrFI	CCNGG	2 cut(s)	550, 592
BmsI	GCATC	2 cut(s)	340, 444
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	198, 320
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	56, 608
BpuMI	CCSGG	2 cut(s)	550, 592
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	90, 549, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	21, 292
Bse21I	CCTNAGG	2 cut(s)	513, 561
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	90, 549, 591
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	434, 527
BseNI	ACTGG	2 cut(s)	21, 292
BseXI	GCAGC	4 cut(s)	411, 424, 490, 512
BseYI	CCCAGC	2 cut(s)	268, 441
BshFI	GGCC	2 cut(s)	398, 590
BsiHKAI	GWGCWC	2 cut(s)	419, 666
BsiSI	CCGG	6 cut(s)	8, 57, 458, 507, 549, 591
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	398, 590
Bsp1286I	GDGCHC	3 cut(s)	27, 419, 666
BspACI	CCGC	3 cut(s)	39, 198, 636
BspANI	GGCC	2 cut(s)	398, 590
BspCNI	CTCAG	2 cut(s)	433, 526
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	12, 558
BspMAI	CTGCAG	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	21, 292
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	3 cut(s)	90, 549, 591
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	90
Bst6I	CTCTTC	5 cut(s)	39, 93, 239, 522, 528
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	420, 513, 561
BstF5I	GGATG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	653
BstMAI	GTCTC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 617
BstNSI	RCATGY	1 cut(s)	328
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	548, 590
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	4 cut(s)	411, 424, 490, 512
BstV2I	GAAGAC	2 cut(s)	198, 320
Bsu36I	CCTNAGG	2 cut(s)	513, 561
BsuRI	GGCC	2 cut(s)	398, 590
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	1 cut(s)	653
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	509
CviAII	CATG	4 cut(s)	325, 463, 580, 658
DdeI	CTNAG	3 cut(s)	420, 513, 561
Eam1104I	CTCTTC	5 cut(s)	39, 93, 239, 522, 528
EarI	CTCTTC	5 cut(s)	39, 93, 239, 522, 528
Ecl136II	GAGCTC	2 cut(s)	417, 664
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	3 cut(s)	27, 419, 666
Eco47I	GGWCC	1 cut(s)	509
Eco53kI	GAGCTC	2 cut(s)	417, 664
Eco57I	CTGAAG	1 cut(s)	284
Eco81I	CCTNAGG	2 cut(s)	513, 561
EcoICRI	GAGCTC	2 cut(s)	417, 664
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	3 cut(s)	27, 419, 666
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	328, 466, 583, 661
FaiI	YATR	7 cut(s)	275, 326, 338, 381, 464, 581, 659
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	4 cut(s)	324, 462, 579, 657
FauI	CCCGC	1 cut(s)	629
Fnu4HI	GCNGC	5 cut(s)	39, 425, 438, 501, 504
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	3 cut(s)	27, 419, 666
Fsp4HI	GCNGC	5 cut(s)	39, 425, 438, 501, 504
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	5 cut(s)	39, 425, 438, 501, 504
GsaI	CCCAGC	2 cut(s)	272, 445
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	398, 590
HapII	CCGG	6 cut(s)	8, 57, 458, 507, 549, 591
HhaI	GCGC	1 cut(s)	653
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	328, 466, 583, 661
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	4 cut(s)	215, 247, 361, 628
HpaII	CCGG	6 cut(s)	8, 57, 458, 507, 549, 591
HphI	GGTGA	1 cut(s)	658
Hpy188I	TCNGA	3 cut(s)	87, 252, 373
Hpy188III	TCNNGA	7 cut(s)	73, 310, 358, 451, 495, 580, 625
Hpy99I	CGWCG	4 cut(s)	38, 134, 167, 179
HpyAV	CCTTC	2 cut(s)	247, 364
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 617
HpyF3I	CTNAG	3 cut(s)	420, 513, 561
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	328, 466, 583, 661
HspAI	GCGC	1 cut(s)	651
LmnI	GCTCC	4 cut(s)	16, 497, 603, 661
Lsp1109I	GCAGC	4 cut(s)	411, 424, 490, 512
LweI	GCATC	2 cut(s)	340, 444
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	3, 283, 301
MhlI	GDGCHC	3 cut(s)	27, 419, 666
MlyI	GAGTC	4 cut(s)	224, 256, 370, 622
MmeI	TCCRAC	1 cut(s)	230
MseI	TTAA	1 cut(s)	673
MspA1I	CMGCKG	3 cut(s)	424, 503, 636
MspI	CCGG	6 cut(s)	8, 57, 458, 507, 549, 591
MspR9I	CCNGG	2 cut(s)	550, 592
MwoI	GCNNNNNNNGC	2 cut(s)	38, 617
NciI	CCSGG	2 cut(s)	550, 592
NlaIII	CATG	4 cut(s)	328, 466, 583, 661
NlaIV	GGNNCC	2 cut(s)	12, 558
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	328
PagI	TCATGA	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	4 cut(s)	126, 138, 159, 171
PflFI	GACNNNGTC	1 cut(s)	644
PkrI	GCNGC	5 cut(s)	40, 426, 439, 502, 505
PleI	GAGTC	4 cut(s)	223, 255, 369, 622
PpsI	GAGTC	4 cut(s)	223, 255, 369, 622
PshAI	GACNNNNGTC	1 cut(s)	198
Psp124BI	GAGCTC	2 cut(s)	419, 666
PspFI	CCCAGC	2 cut(s)	268, 441
PspN4I	GGNNCC	2 cut(s)	12, 558
PspPI	GGNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	644
PvuII	CAGCTG	2 cut(s)	424, 503
SacI	GAGCTC	2 cut(s)	419, 666
SaqAI	TTAA	1 cut(s)	673
SatI	GCNGC	5 cut(s)	39, 425, 438, 501, 504
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	4 cut(s)	224, 256, 370, 622
ScrFI	CCNGG	2 cut(s)	550, 592
SduI	GDGCHC	3 cut(s)	27, 419, 666
SfaNI	GCATC	2 cut(s)	340, 444
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	71, 623
SmoI	CTYRAG	2 cut(s)	71, 623
SsiI	CCGC	3 cut(s)	39, 198, 636
SstI	GAGCTC	2 cut(s)	419, 666
StyD4I	CCNGG	2 cut(s)	548, 590
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	114, 221, 341
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	673
Tru9I	TTAA	1 cut(s)	673
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	4 cut(s)	424, 437, 500, 503
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	290, 537, 558
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	509
XceI	RCATGY	1 cut(s)	328
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.