Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

36005431 .. 36007355

Gene Structure 1925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1301200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCACCGGCTCCACTGGTGCAACCGGAGTCCGTCGCCGACGAGGTCAACTCCGTCGAGCAGCTCCTCAAGAGCTCTAATCCGAACAAGGATGAAGACGAAGTGGTGGTTGAGGACGTGAAGGACGACAATGACAAGGACGAGGACGACGACGATGAGGACGATGACGAGGACGACGATGATAAGGAAGTGGCTTCGAAGCAGAGTAGAAGTGAGAAGAAGAGTCGAAAGGCAATGTTGAAGCTTGGTATGAAGCCTGTAACGGGCGTTAGTAGGGTTACCATCAAGAGGACCAAAAACATACTATTTTTCATCTCGAAACCTGATGTGTTCAAGAGTCCGAAGTCTGACACCTATGTCATATTTGGCGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCTCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGATGGGGAAACCAGAGATTTCGGCCGCAGCTGCTGGAGCTCAGGACGAAGAAGAGGAAGAGGTGGATGAAACCGGGGTGGAACCTAGGGACATTGATTTGGTCATGACGCAGGCTGGGGTATCGAGGAGCAAGGCCGTCAAGGCACTCAAGACTCACAGCGGGGACATTGTCAGCGCTATCATGGAGCTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

216

Amino Acids

23.64

Weight (kDa)

4.38

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	72 - 127	5.9e-22	NAC domain
UBA_HYPK	PF19026	175 - 214	1.8e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AciI	CCGC	2 cut(s)	474, 609
AcoI	YGGCCR	1 cut(s)	471
AfeI	AGCGCT	1 cut(s)	625
AfiI	CCNNNNNNNGG	2 cut(s)	263, 288
AgsI	TTSAA	2 cut(s)	241, 334
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	8 cut(s)	64, 75, 244, 393, 400, 479, 488, 637
AluI	AGCT	8 cut(s)	64, 75, 244, 393, 400, 479, 488, 637
Alw21I	GWGCWC	4 cut(s)	77, 395, 490, 639
AlwNI	CAGNNNCTG	1 cut(s)	482
Aor51HI	AGCGCT	1 cut(s)	625
AoxI	GGCC	3 cut(s)	372, 471, 582
ApeKI	GCWGC	5 cut(s)	61, 400, 413, 476, 479
AspA2I	CCTAGG	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	631
AsuII	TTCGAA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	291
AvrII	CCTAGG	1 cut(s)	533
BanII	GRGCYC	4 cut(s)	77, 395, 490, 639
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	4 cut(s)	77, 395, 490, 639
BbvI	GCAGC	5 cut(s)	73, 387, 400, 466, 488
BccI	CCATC	2 cut(s)	290, 445
BceAI	ACGGC	1 cut(s)	569
BcnI	CCSGG	1 cut(s)	523
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	627
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	6 cut(s)	62, 401, 414, 474, 477, 480
BlnI	CCTAGG	1 cut(s)	533
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	6 cut(s)	63, 402, 415, 475, 478, 481
Bme1390I	CCNGG	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	291
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	12, 531
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	53, 581
BpuMI	CCSGG	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	522, 533
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 288
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	522, 533
BseGI	GGATG	3 cut(s)	97, 435, 520
BseLI	CCNNNNNNNGG	2 cut(s)	263, 288
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	3 cut(s)	410, 431, 503
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	2 cut(s)	56, 589
BseX3I	CGGCCG	1 cut(s)	471
BseXI	GCAGC	5 cut(s)	73, 387, 400, 466, 488
BseYI	CCCAGC	1 cut(s)	563
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	374, 473, 584
BsiEI	CGRYCG	1 cut(s)	474
BsiHKAI	GWGCWC	4 cut(s)	77, 395, 490, 639
BsiSI	CCGG	3 cut(s)	8, 26, 522
BslFI	GGGAC	2 cut(s)	551, 626
BslI	CCNNNNNNNGG	2 cut(s)	263, 288
BsmFI	GGGAC	2 cut(s)	551, 626
BsnI	GGCC	3 cut(s)	374, 473, 584
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	4 cut(s)	77, 395, 490, 639
Bsp143I	GATC	1 cut(s)	378
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	474, 609
BspANI	GGCC	3 cut(s)	374, 473, 584
BspCNI	CTCAG	3 cut(s)	409, 430, 502
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	12, 531
BspMAI	CTGCAG	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	522, 533
BssMI	GATC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	533
Bst6I	CTCTTC	3 cut(s)	215, 495, 501
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	396, 417, 489
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	97, 435, 520
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 485, 590
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	5 cut(s)	73, 387, 400, 466, 488
BstV2I	GAAGAC	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	374, 473, 584
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	3 cut(s)	97, 435, 520
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	561
CaiI	CAGNNNCTG	1 cut(s)	482
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	291
CseI	GACGC	1 cut(s)	565
CviAII	CATG	3 cut(s)	439, 553, 631
DdeI	CTNAG	3 cut(s)	396, 417, 489
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	471
EagI	CGGCCG	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	215, 495, 501
EarI	CTCTTC	3 cut(s)	215, 495, 501
Ecl136II	GAGCTC	4 cut(s)	75, 393, 488, 637
EclXI	CGGCCG	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	533
Eco24I	GRGCYC	4 cut(s)	77, 395, 490, 639
Eco47I	GGWCC	1 cut(s)	291
Eco47III	AGCGCT	1 cut(s)	625
Eco52I	CGGCCG	1 cut(s)	471
Eco53kI	GAGCTC	4 cut(s)	75, 393, 488, 637
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	4 cut(s)	75, 393, 488, 637
EcoO65I	GGTNACC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	533
EcoT38I	GRGCYC	4 cut(s)	77, 395, 490, 639
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	3 cut(s)	442, 556, 634
FaiI	YATR	7 cut(s)	251, 302, 357, 362, 440, 554, 632
FaqI	GGGAC	2 cut(s)	551, 626
FatI	CATG	3 cut(s)	438, 552, 630
FauI	CCCGC	1 cut(s)	602
Fnu4HI	GCNGC	6 cut(s)	62, 401, 414, 474, 477, 480
FokI	GGATG	3 cut(s)	104, 442, 527
FriOI	GRGCYC	4 cut(s)	77, 395, 490, 639
Fsp4HI	GCNGC	6 cut(s)	62, 401, 414, 474, 477, 480
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	6 cut(s)	62, 401, 414, 474, 477, 480
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	3 cut(s)	374, 473, 584
HapII	CCGG	3 cut(s)	8, 26, 522
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	3 cut(s)	442, 556, 634
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	29, 223, 337, 601
HpaII	CCGG	3 cut(s)	8, 26, 522
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	84, 342, 349
Hpy188III	TCNNGA	8 cut(s)	70, 286, 316, 334, 427, 491, 553, 598
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	6 cut(s)	38, 44, 59, 152, 155, 179
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	22, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 485, 590
HpyF3I	CTNAG	3 cut(s)	396, 417, 489
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	442, 556, 634
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	5 cut(s)	16, 69, 485, 576, 634
Lsp1109I	GCAGC	5 cut(s)	73, 387, 400, 466, 488
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	3, 259, 277
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	6 cut(s)	107, 229, 232, 509, 512, 518
MhlI	GDGCHC	4 cut(s)	77, 395, 490, 639
MlyI	GAGTC	4 cut(s)	38, 232, 346, 595
MseI	TTAA	1 cut(s)	646
MspA1I	CMGCKG	3 cut(s)	400, 479, 609
MspI	CCGG	3 cut(s)	8, 26, 522
MspR9I	CCNGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	3 cut(s)	479, 485, 590
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	3 cut(s)	442, 556, 634
NlaIV	GGNNCC	2 cut(s)	12, 531
NmuCI	GTSAC	1 cut(s)	3
NspV	TTCGAA	1 cut(s)	197
PagI	TCATGA	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	4 cut(s)	123, 147, 159, 174
PflFI	GACNNNGTC	2 cut(s)	44, 617
PkrI	GCNGC	6 cut(s)	63, 402, 415, 475, 478, 481
PleI	GAGTC	4 cut(s)	37, 231, 345, 595
PpsI	GAGTC	4 cut(s)	37, 231, 345, 595
Psp124BI	GAGCTC	4 cut(s)	77, 395, 490, 639
PspEI	GGTNACC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	563
PspN4I	GGNNCC	2 cut(s)	12, 531
PspPI	GGNCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	482
PsyI	GACNNNGTC	2 cut(s)	44, 617
PvuII	CAGCTG	2 cut(s)	400, 479
SacI	GAGCTC	4 cut(s)	77, 395, 490, 639
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	6 cut(s)	62, 401, 414, 474, 477, 480
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	4 cut(s)	38, 232, 346, 595
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	4 cut(s)	77, 395, 490, 639
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	291
SmlI	CTYRAG	2 cut(s)	68, 596
SmoI	CTYRAG	2 cut(s)	68, 596
SsiI	CCGC	2 cut(s)	474, 609
SspMI	CTAG	1 cut(s)	534
SstI	GAGCTC	4 cut(s)	77, 395, 490, 639
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	533
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	6 cut(s)	57, 197, 226, 317, 381, 572
TauI	GCSGC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	61, 400, 413, 476, 479
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	4 cut(s)	108, 266, 301, 531
TspGWI	ACGGA	2 cut(s)	22, 43
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	2 cut(s)	44, 617
VpaK11BI	GGWCC	1 cut(s)	291
XmaJI	CCTAGG	1 cut(s)	533
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.