Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

67551361 .. 67552879

Gene Structure 1519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCGCCGGCGCTCGTCGAGGAGGAGCTCGTCGGAGAGGTCCCGTCCACCGAGCAATCCCTCAAGAACGGCCTTCAGAACAAGGAAGAAGATGAGGTCGTGGTGGAGGATGTGAAGGACGACAAGGAGGACGACGATGACGACGATGATGACGAGGACGAGGACGATGACGACGACAAGGAAGATGGCGCTCAGGGTGGAAATGAGTCTTCGAAGCAAAGCAGGAGTGAGAAGAAGAGTCGTAAGGCAATGTTGAAGCTGGGAATGAAGCAAGTCACCGGTGTTAGCAGGGTCACCATCAAGAGAACCAAAAACATTCTGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAACTCTGAGACCTATGTCATATTTGGTGAGGCCAAGATTGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGATGGCGAAACCAGAGATTTCTGGAGCTGGTGCAGGAGCCCAAGCAGATGAAGAGGAAGAAGAGATTGATGAAACCGGTGTTGAACCTCGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCAAGGAGCAAGGCAGTCAAGGCTCTCAAGACGCACAGTGGGGACATTGTCAGTGCCATCATGGAGCTTACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

221

Amino Acids

24.22

Weight (kDa)

4.29

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	77 - 132	5.1e-22	NAC domain
UBA_HYPK	PF19026	181 - 220	1.9e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	59
AgeI	ACCGGT	2 cut(s)	278, 539
AgsI	TTSAA	3 cut(s)	256, 349, 548
AluBI	AGCT	6 cut(s)	28, 259, 408, 415, 491, 655
AluI	AGCT	6 cut(s)	28, 259, 408, 415, 491, 655
Alw21I	GWGCWC	2 cut(s)	30, 410
Alw26I	GTCTC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	2 cut(s)	70, 387
ApeKI	GCWGC	2 cut(s)	415, 428
AsiGI	ACCGGT	2 cut(s)	278, 539
AspLEI	GCGC	2 cut(s)	13, 191
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	268, 286, 395
AsuII	TTCGAA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	40
BanII	GRGCYC	3 cut(s)	30, 410, 505
BbsI	GAAGAC	2 cut(s)	201, 337
Bbv12I	GWGCWC	2 cut(s)	30, 410
BbvI	GCAGC	2 cut(s)	402, 415
BccI	CCATC	4 cut(s)	179, 305, 460, 653
BceAI	ACGGC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	416
BfoI	RGCGCY	2 cut(s)	14, 192
BisI	GCNGC	2 cut(s)	416, 429
BlsI	GCNGC	2 cut(s)	417, 430
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	42, 502
BmsI	GCATC	1 cut(s)	435
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	201, 337
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	47, 599
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	551
BsaWI	WCCGGW	2 cut(s)	278, 539
Bse118I	RCCGGY	3 cut(s)	7, 278, 539
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	115, 450
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	206, 354, 425
BseRI	GAGGAG	2 cut(s)	35, 38
BseXI	GCAGC	2 cut(s)	402, 415
BseYI	CCCAGC	3 cut(s)	259, 432, 581
BsgI	GTGCAG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	72, 389
BshTI	ACCGGT	2 cut(s)	278, 539
BsiHKAI	GWGCWC	2 cut(s)	30, 410
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	8, 279, 540
BslFI	GGGAC	3 cut(s)	26, 569, 644
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	3 cut(s)	26, 569, 644
BsnI	GGCC	2 cut(s)	72, 389
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	552
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	30, 410, 505
BspANI	GGCC	2 cut(s)	72, 389
BspCNI	CTCAG	3 cut(s)	205, 355, 424
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	42, 502
BspMAI	CTGCAG	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	3 cut(s)	7, 278, 539
BssAI	RCCGGY	3 cut(s)	7, 278, 539
BssECI	CCNNGG	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	3 cut(s)	230, 510, 519
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	192, 363, 411
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	115, 450
BstH2I	RGCGCY	2 cut(s)	14, 192
BstHHI	GCGC	2 cut(s)	13, 191
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstPAI	GACNNNNGTC	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	402, 415
BstV2I	GAAGAC	2 cut(s)	201, 337
BsuRI	GGCC	2 cut(s)	72, 389
BtsCI	GGATG	2 cut(s)	115, 450
BtsIMutI	CAGTG	2 cut(s)	631, 646
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	2 cut(s)	13, 191
Cfr10I	RCCGGY	3 cut(s)	7, 278, 539
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	628
CspAI	ACCGGT	2 cut(s)	278, 539
CviAII	CATG	3 cut(s)	454, 571, 649
DdeI	CTNAG	3 cut(s)	192, 363, 411
Eam1104I	CTCTTC	3 cut(s)	230, 510, 519
EarI	CTCTTC	3 cut(s)	230, 510, 519
Ecl136II	GAGCTC	2 cut(s)	28, 408
Eco24I	GRGCYC	3 cut(s)	30, 410, 505
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	2 cut(s)	28, 408
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	292
EcoICRI	GAGCTC	2 cut(s)	28, 408
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	292
EcoT38I	GRGCYC	3 cut(s)	30, 410, 505
FaeI	CATG	3 cut(s)	457, 574, 652
FaiI	YATR	5 cut(s)	372, 377, 455, 572, 650
FaqI	GGGAC	3 cut(s)	26, 569, 644
FatI	CATG	3 cut(s)	453, 570, 648
Fnu4HI	GCNGC	2 cut(s)	416, 429
FokI	GGATG	2 cut(s)	122, 457
FriOI	GRGCYC	3 cut(s)	30, 410, 505
Fsp4HI	GCNGC	2 cut(s)	416, 429
GlaI	GCGC	2 cut(s)	12, 190
GluI	GCNGC	2 cut(s)	416, 429
GsaI	CCCAGC	3 cut(s)	263, 436, 585
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	2 cut(s)	14, 192
HaeIII	GGCC	2 cut(s)	72, 389
HapII	CCGG	3 cut(s)	8, 279, 540
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	2 cut(s)	13, 191
Hin1II	CATG	3 cut(s)	457, 574, 652
Hin6I	GCGC	2 cut(s)	11, 189
HinP1I	GCGC	2 cut(s)	11, 189
HinfI	GANTC	3 cut(s)	206, 238, 352
HpaII	CCGG	3 cut(s)	8, 279, 540
HphI	GGTGA	3 cut(s)	268, 286, 395
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	35, 78, 364
Hpy188III	TCNNGA	9 cut(s)	64, 301, 331, 349, 442, 486, 554, 571, 616
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	5 cut(s)	20, 35, 137, 146, 176
HpyAV	CCTTC	2 cut(s)	83, 109
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4V	TGCA	2 cut(s)	418, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	3 cut(s)	192, 363, 411
Hsp92II	CATG	3 cut(s)	457, 574, 652
HspAI	GCGC	2 cut(s)	11, 189
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
LmnI	GCTCC	5 cut(s)	25, 488, 500, 594, 652
Lsp1109I	GCAGC	2 cut(s)	402, 415
LweI	GCATC	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	274, 292
MhlI	GDGCHC	3 cut(s)	30, 410, 505
MlyI	GAGTC	3 cut(s)	215, 247, 361
MmeI	TCCRAC	1 cut(s)	13
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	3 cut(s)	8, 279, 540
MwoI	GCNNNNNNNGC	1 cut(s)	608
NaeI	GCCGGC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	457, 574, 652
NlaIV	GGNNCC	2 cut(s)	42, 502
NmuCI	GTSAC	2 cut(s)	274, 292
NspV	TTCGAA	1 cut(s)	212
PagI	TCATGA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 141, 150, 171
PdiI	GCCGGC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	635
PinAI	ACCGGT	2 cut(s)	278, 539
PkrI	GCNGC	2 cut(s)	417, 430
PleI	GAGTC	3 cut(s)	214, 246, 360
PpsI	GAGTC	3 cut(s)	214, 246, 360
PpuMI	RGGWCCY	1 cut(s)	40
PshAI	GACNNNNGTC	1 cut(s)	371
Psp124BI	GAGCTC	2 cut(s)	30, 410
Psp5II	RGGWCCY	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	292
PspFI	CCCAGC	3 cut(s)	259, 432, 581
PspN4I	GGNNCC	2 cut(s)	42, 502
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	420
PsyI	GACNNNGTC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	415
SacI	GAGCTC	2 cut(s)	30, 410
SaqAI	TTAA	1 cut(s)	664
SatI	GCNGC	2 cut(s)	416, 429
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	3 cut(s)	215, 247, 361
SduI	GDGCHC	3 cut(s)	30, 410, 505
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	1 cut(s)	416
SfuI	TTCGAA	1 cut(s)	212
SgrAI	CRCCGGYG	2 cut(s)	7, 278
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	62, 614
SmoI	CTYRAG	2 cut(s)	62, 614
SstI	GAGCTC	2 cut(s)	30, 410
TaaI	ACNGT	1 cut(s)	626
TaqI	TCGA	3 cut(s)	18, 212, 332
Tru1I	TTAA	1 cut(s)	664
Tru9I	TTAA	1 cut(s)	664
TscAI	CASTG	2 cut(s)	631, 646
TseFI	GTSAC	2 cut(s)	274, 292
TseI	GCWGC	2 cut(s)	415, 428
Tsp45I	GTSAC	2 cut(s)	274, 292
TspDTI	ATGAA	4 cut(s)	281, 316, 528, 549
TspRI	CASTG	2 cut(s)	631, 646
Tth111I	GACNNNGTC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.