Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

23602953 .. 23604608

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCGCCGGCGCTCGTCGAGGAGGAGCTCGTCGGAGAGGTCCCGTCCACCGAGCAGTCCCTCAAGAAAGGCCTTCAGAACAAGGAAGAAGATGAGGAGGTCGTCGTGGAGGATGTGAAGGATGAGGACGATGAGGATGACGATGATGACGACGACGACGATGACGACGACAAGGAAGACGGCGCTCAAGGTGGAAATGAGTCTTCGAAGCAAAGCAGGAGTGAGAAGAAGAGTCGCAAGGTAATGATGAAGCTTGGGATGAAGCAAGTCACTGGTGTTAGCAGGGTCACCATCAAGAGAGCCAAAAACATTCTGTTTTTTATCTCGAAACCTGATGTGTTCAAGAGTCCAAACTCTGACACGTATGTCATATTTGGTGAGGCCAAGATTGAGGATTTGAGCTCTCAGCTACAGACACAGGCTGCCCAGCAGTTCAGGATGCCAGACATGAGTTCCGTGATGGCCAAACCAGAGATTTCTGGCGCTGGTGCTGGAGCCCCTGCAGATGAAGAGGAAGAAGAGATTGATGAAACCGGTGTTGAAGCTCGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCAAGGAGCAAGGCAGTCAAGGCTCTCAAGACTCACAGCGGGGACATTGTCAGTGCTATCATGGAGCTTACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

220

Amino Acids

23.94

Weight (kDa)

4.3

Isoelectric Point (pI)

64.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	75 - 130	1.1e-21	NAC domain
UBA_HYPK	PF19026	179 - 218	1e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AciI	CCGC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	360
AgeI	ACCGGT	1 cut(s)	533
AgsI	TTSAA	2 cut(s)	343, 542
AluBI	AGCT	6 cut(s)	28, 253, 402, 409, 545, 649
AluI	AGCT	6 cut(s)	28, 253, 402, 409, 545, 649
Alw21I	GWGCWC	2 cut(s)	30, 404
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	3 cut(s)	70, 381, 462
ApeKI	GCWGC	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	533
AspLEI	GCGC	3 cut(s)	13, 185, 485
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	280, 389
AsuII	TTCGAA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	464
BanII	GRGCYC	3 cut(s)	30, 404, 499
BbsI	GAAGAC	2 cut(s)	183, 195
Bbv12I	GWGCWC	2 cut(s)	30, 404
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	299, 454
BceAI	ACGGC	1 cut(s)	196
BfmI	CTRYAG	2 cut(s)	410, 501
BfoI	RGCGCY	3 cut(s)	14, 186, 486
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	42, 496
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	2 cut(s)	183, 195
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	206
BpuEI	CTTGAG	3 cut(s)	47, 171, 593
BsaAI	YACGTR	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	533
Bse118I	RCCGGY	2 cut(s)	7, 533
Bse1I	ACTGG	1 cut(s)	277
BseGI	GGATG	5 cut(s)	118, 127, 142, 264, 444
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	3 cut(s)	35, 38, 110
BseXI	GCAGC	1 cut(s)	409
BseYI	CCCAGC	2 cut(s)	426, 575
BshFI	GGCC	3 cut(s)	72, 383, 464
BshTI	ACCGGT	1 cut(s)	533
BsiHKAI	GWGCWC	2 cut(s)	30, 404
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	8, 534
BslFI	GGGAC	4 cut(s)	26, 43, 563, 638
BsmFI	GGGAC	4 cut(s)	26, 43, 563, 638
BsnI	GGCC	3 cut(s)	72, 383, 464
BsoBI	CYCGRG	1 cut(s)	546
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1286I	GDGCHC	3 cut(s)	30, 404, 499
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	3 cut(s)	72, 383, 464
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	42, 496
BspMAI	CTGCAG	1 cut(s)	505
BspT104I	TTCGAA	1 cut(s)	206
BsrFI	RCCGGY	2 cut(s)	7, 533
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	2 cut(s)	7, 533
Bst6I	CTCTTC	3 cut(s)	224, 504, 513
BstBAI	YACGTR	1 cut(s)	363
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	5 cut(s)	118, 127, 142, 264, 444
BstH2I	RGCGCY	3 cut(s)	14, 186, 486
BstHHI	GCGC	3 cut(s)	13, 185, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstPI	GGTNACC	1 cut(s)	286
BstSFI	CTRYAG	2 cut(s)	410, 501
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	2 cut(s)	183, 195
BsuRI	GGCC	3 cut(s)	72, 383, 464
BtsCI	GGATG	5 cut(s)	118, 127, 142, 264, 444
BtsIMutI	CAGTG	2 cut(s)	270, 640
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	3 cut(s)	13, 185, 485
Cfr10I	RCCGGY	2 cut(s)	7, 533
Cfr13I	GGNCC	1 cut(s)	40
CspAI	ACCGGT	1 cut(s)	533
CviAII	CATG	3 cut(s)	448, 565, 643
DdeI	CTNAG	1 cut(s)	405
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	3 cut(s)	224, 504, 513
EarI	CTCTTC	3 cut(s)	224, 504, 513
Ecl136II	GAGCTC	2 cut(s)	28, 402
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	3 cut(s)	30, 404, 499
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	2 cut(s)	28, 402
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	286
EcoICRI	GAGCTC	2 cut(s)	28, 402
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	286
EcoT38I	GRGCYC	3 cut(s)	30, 404, 499
FaeI	CATG	3 cut(s)	451, 568, 646
FaiI	YATR	5 cut(s)	366, 371, 449, 566, 644
FaqI	GGGAC	4 cut(s)	26, 43, 563, 638
FatI	CATG	3 cut(s)	447, 564, 642
FauI	CCCGC	1 cut(s)	614
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	5 cut(s)	125, 134, 149, 271, 451
FriOI	GRGCYC	3 cut(s)	30, 404, 499
Fsp4HI	GCNGC	1 cut(s)	423
GlaI	GCGC	3 cut(s)	12, 184, 484
GluI	GCNGC	1 cut(s)	423
GsaI	CCCAGC	2 cut(s)	430, 579
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	3 cut(s)	14, 186, 486
HaeIII	GGCC	3 cut(s)	72, 383, 464
HapII	CCGG	2 cut(s)	8, 534
HhaI	GCGC	3 cut(s)	13, 185, 485
Hin1II	CATG	3 cut(s)	451, 568, 646
Hin6I	GCGC	3 cut(s)	11, 183, 483
HinP1I	GCGC	3 cut(s)	11, 183, 483
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	4 cut(s)	200, 232, 346, 613
HpaII	CCGG	2 cut(s)	8, 534
HphI	GGTGA	2 cut(s)	280, 389
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	35, 78, 358
Hpy188III	TCNNGA	8 cut(s)	64, 295, 325, 343, 436, 548, 565, 610
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	7 cut(s)	20, 35, 107, 155, 158, 161, 170
HpyAV	CCTTC	2 cut(s)	83, 112
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	3 cut(s)	451, 568, 646
HspAI	GCGC	3 cut(s)	11, 183, 483
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
LmnI	GCTCC	4 cut(s)	25, 494, 588, 646
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	429
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	268, 286
MboII	GAAGA	9 cut(s)	98, 101, 188, 195, 238, 241, 521, 527, 530
MhlI	GDGCHC	3 cut(s)	30, 404, 499
MlsI	TGGCCA	1 cut(s)	464
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	4 cut(s)	209, 241, 355, 607
MmeI	TCCRAC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	464
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	1 cut(s)	658
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	621
MspI	CCGG	2 cut(s)	8, 534
MwoI	GCNNNNNNNGC	1 cut(s)	602
NaeI	GCCGGC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	451, 568, 646
NlaIV	GGNNCC	2 cut(s)	42, 496
NmuCI	GTSAC	2 cut(s)	268, 286
NspV	TTCGAA	1 cut(s)	206
PagI	TCATGA	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	4 cut(s)	147, 156, 162, 165
PdiI	GCCGGC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	629
PinAI	ACCGGT	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	4 cut(s)	208, 240, 354, 607
PpsI	GAGTC	4 cut(s)	208, 240, 354, 607
Ppu21I	YACGTR	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	40
Psp124BI	GAGCTC	2 cut(s)	30, 404
Psp5II	RGGWCCY	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	286
PspFI	CCCAGC	2 cut(s)	426, 575
PspN4I	GGNNCC	2 cut(s)	42, 496
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	505
PsyI	GACNNNGTC	1 cut(s)	629
SacI	GAGCTC	2 cut(s)	30, 404
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	4 cut(s)	209, 241, 355, 607
SduI	GDGCHC	3 cut(s)	30, 404, 499
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	2 cut(s)	410, 501
SfuI	TTCGAA	1 cut(s)	206
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	3 cut(s)	62, 186, 608
SmoI	CTYRAG	3 cut(s)	62, 186, 608
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	621
SstI	GAGCTC	2 cut(s)	30, 404
StuI	AGGCCT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	3 cut(s)	18, 206, 326
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	2 cut(s)	277, 640
TseFI	GTSAC	2 cut(s)	268, 286
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	2 cut(s)	268, 286
TspDTI	ATGAA	4 cut(s)	263, 275, 522, 543
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	2 cut(s)	277, 640
Tth111I	GACNNNGTC	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.