Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

67945081 .. 67946501

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG463400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCGCCGGCGCTCGTCGAGGAGGAGCTCGTCGGAGAGGTCCCGTCCACCGAGCAATCCCTCAAGAACGGCCTTCAGAACAAGGAAGAAGATGAGGTCGTGGTGGAGGATGTGAAGGACGACAAGGATGACGACGATGAGGACGATGATGACGAGGACGAGGACGAGGAAGATGGCGCTCAGGGTGGAAATGAGTCTTCGAAGCAAAGCAGGAGTGAGAAGAAGAGTCGTAAGGCAATGCTGAAGCTGGGAATGAAGCAAGTCACTGGTGTTAGCAGGGTCACCATCAAGAGAACCAAAAACATTCTGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAACTCTGAGACCTATGTCATATTTGGTGAGGCCAAGATTGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGATGGCGAAACCAGAGATTTCTGGAGCTGGTACTGGACCCCAAGCAGATGAAGAGGAAGAAGAGATTGATGAAACCGGTGTTGAACCTCGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCAAGGAGCAAGGCAGTCAAGGCTCTCAAGACGCACAGTGGGGACATTGTCAGTGCCATCATGGAGCTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

217

Amino Acids

23.82

Weight (kDa)

4.33

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	73 - 128	4.9e-22	NAC domain
UBA_HYPK	PF19026	177 - 216	1.9e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	59, 263
AfaI	GTAC	1 cut(s)	484
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	337, 536
AluBI	AGCT	6 cut(s)	28, 247, 396, 403, 479, 643
AluI	AGCT	6 cut(s)	28, 247, 396, 403, 479, 643
Alw21I	GWGCWC	3 cut(s)	30, 398, 645
Alw26I	GTCTC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	2 cut(s)	70, 375
ApeKI	GCWGC	2 cut(s)	403, 416
AsiGI	ACCGGT	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	13, 179
AspS9I	GGNCC	2 cut(s)	40, 488
AsuHPI	GGTGA	3 cut(s)	274, 383, 637
AsuII	TTCGAA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	2 cut(s)	40, 488
BanII	GRGCYC	3 cut(s)	30, 398, 645
BbsI	GAAGAC	2 cut(s)	189, 325
Bbv12I	GWGCWC	3 cut(s)	30, 398, 645
BbvI	GCAGC	2 cut(s)	390, 403
BccI	CCATC	4 cut(s)	167, 293, 448, 641
BceAI	ACGGC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	404
BfoI	RGCGCY	2 cut(s)	14, 180
BisI	GCNGC	2 cut(s)	404, 417
BlsI	GCNGC	2 cut(s)	405, 418
Bme18I	GGWCC	2 cut(s)	40, 488
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	40, 488
BmiI	GGNNCC	2 cut(s)	42, 490
BmsI	GCATC	1 cut(s)	423
BoxI	GACNNNNGTC	1 cut(s)	359
BpiI	GAAGAC	2 cut(s)	189, 325
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	47, 587
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	539
BsaWI	WCCGGW	1 cut(s)	527
Bse118I	RCCGGY	2 cut(s)	7, 527
Bse1I	ACTGG	2 cut(s)	271, 490
Bse3DI	GCAATG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	3 cut(s)	115, 133, 438
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	194, 342, 413
BseNI	ACTGG	2 cut(s)	271, 490
BseRI	GAGGAG	2 cut(s)	35, 38
BseXI	GCAGC	2 cut(s)	390, 403
BseYI	CCCAGC	3 cut(s)	247, 420, 569
BshFI	GGCC	2 cut(s)	72, 377
BshTI	ACCGGT	1 cut(s)	527
BsiHKAI	GWGCWC	3 cut(s)	30, 398, 645
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	8, 528
BslFI	GGGAC	3 cut(s)	26, 557, 632
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	3 cut(s)	26, 557, 632
BsnI	GGCC	2 cut(s)	72, 377
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	540
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	30, 398, 645
BspANI	GGCC	2 cut(s)	72, 377
BspCNI	CTCAG	3 cut(s)	193, 343, 412
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	42, 490
BspMAI	CTGCAG	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	7, 527
BsrI	ACTGG	2 cut(s)	271, 490
BssAI	RCCGGY	2 cut(s)	7, 527
BssECI	CCNNGG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	3 cut(s)	218, 498, 507
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	180, 351, 399
BstEII	GGTNACC	1 cut(s)	280
BstF5I	GGATG	3 cut(s)	115, 133, 438
BstH2I	RGCGCY	2 cut(s)	14, 180
BstHHI	GCGC	2 cut(s)	13, 179
BstMAI	GTCTC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstPAI	GACNNNNGTC	1 cut(s)	359
BstPI	GGTNACC	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	390, 403
BstV2I	GAAGAC	2 cut(s)	189, 325
BsuRI	GGCC	2 cut(s)	72, 377
BtsCI	GGATG	3 cut(s)	115, 133, 438
BtsIMutI	CAGTG	3 cut(s)	264, 619, 634
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	13, 179
Cfr10I	RCCGGY	2 cut(s)	7, 527
Cfr13I	GGNCC	2 cut(s)	40, 488
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	483
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	3 cut(s)	442, 559, 637
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	180, 351, 399
Eam1104I	CTCTTC	3 cut(s)	218, 498, 507
EarI	CTCTTC	3 cut(s)	218, 498, 507
Ecl136II	GAGCTC	3 cut(s)	28, 396, 643
Eco24I	GRGCYC	3 cut(s)	30, 398, 645
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	40, 488
Eco53kI	GAGCTC	3 cut(s)	28, 396, 643
Eco57I	CTGAAG	2 cut(s)	59, 263
Eco88I	CYCGRG	1 cut(s)	540
Eco91I	GGTNACC	1 cut(s)	280
EcoICRI	GAGCTC	3 cut(s)	28, 396, 643
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	280
EcoT38I	GRGCYC	3 cut(s)	30, 398, 645
FaeI	CATG	3 cut(s)	445, 562, 640
FaiI	YATR	5 cut(s)	360, 365, 443, 560, 638
FaqI	GGGAC	3 cut(s)	26, 557, 632
FatI	CATG	3 cut(s)	441, 558, 636
Fnu4HI	GCNGC	2 cut(s)	404, 417
FokI	GGATG	3 cut(s)	122, 140, 445
FriOI	GRGCYC	3 cut(s)	30, 398, 645
Fsp4HI	GCNGC	2 cut(s)	404, 417
GlaI	GCGC	2 cut(s)	12, 178
GluI	GCNGC	2 cut(s)	404, 417
GsaI	CCCAGC	3 cut(s)	251, 424, 573
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	2 cut(s)	14, 180
HaeIII	GGCC	2 cut(s)	72, 377
HapII	CCGG	2 cut(s)	8, 528
HgaI	GACGC	1 cut(s)	616
HhaI	GCGC	2 cut(s)	13, 179
Hin1II	CATG	3 cut(s)	445, 562, 640
Hin6I	GCGC	2 cut(s)	11, 177
HinP1I	GCGC	2 cut(s)	11, 177
HinfI	GANTC	3 cut(s)	194, 226, 340
HpaII	CCGG	2 cut(s)	8, 528
HphI	GGTGA	3 cut(s)	274, 383, 637
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	35, 78, 352
Hpy188III	TCNNGA	9 cut(s)	64, 289, 319, 337, 430, 474, 542, 559, 604
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	3 cut(s)	20, 35, 137
HpyAV	CCTTC	2 cut(s)	83, 109
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4V	TGCA	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	3 cut(s)	180, 351, 399
Hsp92II	CATG	3 cut(s)	445, 562, 640
HspAI	GCGC	2 cut(s)	11, 177
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
LmnI	GCTCC	4 cut(s)	25, 476, 582, 640
Lsp1109I	GCAGC	2 cut(s)	390, 403
LweI	GCATC	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	262, 280
MhlI	GDGCHC	3 cut(s)	30, 398, 645
MlyI	GAGTC	3 cut(s)	203, 235, 349
MmeI	TCCRAC	1 cut(s)	13
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	1 cut(s)	652
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	2 cut(s)	8, 528
MwoI	GCNNNNNNNGC	1 cut(s)	596
NaeI	GCCGGC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	445, 562, 640
NlaIV	GGNNCC	2 cut(s)	42, 490
NmuCI	GTSAC	2 cut(s)	262, 280
NspV	TTCGAA	1 cut(s)	200
PagI	TCATGA	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 150
PdiI	GCCGGC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	623
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	405, 418
PleI	GAGTC	3 cut(s)	202, 234, 348
PpsI	GAGTC	3 cut(s)	202, 234, 348
PpuMI	RGGWCCY	1 cut(s)	40
PshAI	GACNNNNGTC	1 cut(s)	359
Psp124BI	GAGCTC	3 cut(s)	30, 398, 645
Psp5II	RGGWCCY	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	280
PspFI	CCCAGC	3 cut(s)	247, 420, 569
PspN4I	GGNNCC	2 cut(s)	42, 490
PspPI	GGNCC	2 cut(s)	40, 488
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	408
PsyI	GACNNNGTC	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SacI	GAGCTC	3 cut(s)	30, 398, 645
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	2 cut(s)	404, 417
Sau96I	GGNCC	2 cut(s)	40, 488
SchI	GAGTC	3 cut(s)	203, 235, 349
SduI	GDGCHC	3 cut(s)	30, 398, 645
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	404
SfuI	TTCGAA	1 cut(s)	200
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	2 cut(s)	40, 488
SmlI	CTYRAG	2 cut(s)	62, 602
SmoI	CTYRAG	2 cut(s)	62, 602
SstI	GAGCTC	3 cut(s)	30, 398, 645
TaaI	ACNGT	1 cut(s)	614
TaqI	TCGA	3 cut(s)	18, 200, 320
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TscAI	CASTG	3 cut(s)	271, 619, 634
TseFI	GTSAC	2 cut(s)	262, 280
TseI	GCWGC	2 cut(s)	403, 416
Tsp45I	GTSAC	2 cut(s)	262, 280
TspDTI	ATGAA	4 cut(s)	269, 304, 516, 537
TspRI	CASTG	3 cut(s)	271, 619, 634
Tth111I	GACNNNGTC	1 cut(s)	623
VpaK11BI	GGWCC	2 cut(s)	40, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.