Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8044230.1

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Reverse (-)

19 .. 547

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8044230.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgttgaagctgggaatgaagcaagtcactggtgttagcagggtcaccatcaagagaaccaaaaacattctgtttttcatctcgaaacctgatgtcttcaagagtccaaactctgagacctatgtcatatttggtgaggccaagattgaggatttgagctctcagctgcagacacaggctgcccagcagttcaggatgccagacatgagttctgtgatggcgaaaccagagatttctggagctggtgcaggagcccaagcagatgaagaggaagaagagattgatgaaaccggtgttgaacctcgggacattgatttggtcatgacacaggctggggtatcaaggagcaaggcagtcaaggctctcaagacgcacagtggggacattgtcagtgccatcatggagcttaccacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

138

Amino Acids

15.01

Weight (kDa)

5.06

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgeI	ACCGGT	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	7, 100, 299
AluBI	AGCT	5 cut(s)	10, 159, 166, 242, 406
AluI	AGCT	5 cut(s)	10, 159, 166, 242, 406
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	166, 179
AsiGI	ACCGGT	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	37, 146
AvaI	CYCGRG	1 cut(s)	303
BanII	GRGCYC	2 cut(s)	161, 256
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	153, 166
BccI	CCATC	3 cut(s)	56, 211, 404
BcoDI	GTCTC	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	167, 180
BlsI	GCNGC	2 cut(s)	168, 181
BmeT110I	CYCGRG	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	186
BoxI	GACNNNNGTC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	105, 176
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	153, 166
BseYI	CCCAGC	3 cut(s)	10, 183, 332
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	140
BshTI	ACCGGT	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	320, 395
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	320, 395
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	161, 256
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	106, 175
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	261, 270
BstDEI	CTNAG	2 cut(s)	114, 162
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstPAI	GACNNNNGTC	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	153, 166
BstV2I	GAAGAC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	3 cut(s)	27, 382, 397
CciI	TCATGA	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	1 cut(s)	379
CspAI	ACCGGT	1 cut(s)	290
CviAII	CATG	3 cut(s)	205, 322, 400
DdeI	CTNAG	2 cut(s)	114, 162
Eam1104I	CTCTTC	2 cut(s)	261, 270
EarI	CTCTTC	2 cut(s)	261, 270
Ecl136II	GAGCTC	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	161, 256
Eco31I	GGTCTC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	303
Eco91I	GGTNACC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	159
EcoO65I	GGTNACC	1 cut(s)	43
EcoT38I	GRGCYC	2 cut(s)	161, 256
FaeI	CATG	3 cut(s)	208, 325, 403
FaiI	YATR	5 cut(s)	123, 128, 206, 323, 401
FaqI	GGGAC	2 cut(s)	320, 395
FatI	CATG	3 cut(s)	204, 321, 399
Fnu4HI	GCNGC	2 cut(s)	167, 180
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	2 cut(s)	161, 256
Fsp4HI	GCNGC	2 cut(s)	167, 180
GluI	GCNGC	2 cut(s)	167, 180
GsaI	CCCAGC	3 cut(s)	14, 187, 336
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	208, 325, 403
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	37, 146
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	8 cut(s)	52, 82, 100, 193, 237, 305, 322, 367
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	169, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	114, 162
Hsp92II	CATG	3 cut(s)	208, 325, 403
LmnI	GCTCC	4 cut(s)	239, 251, 345, 403
Lsp1109I	GCAGC	2 cut(s)	153, 166
LweI	GCATC	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	25, 43
MboII	GAAGA	4 cut(s)	88, 278, 284, 287
MhlI	GDGCHC	2 cut(s)	161, 256
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	130, 142, 262, 312
MseI	TTAA	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	208, 325, 403
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	25, 43
PagI	TCATGA	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	386
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	168, 181
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PshAI	GACNNNNGTC	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	161
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	3 cut(s)	10, 183, 332
PspN4I	GGNNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	2 cut(s)	167, 180
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	161, 256
SetI	ASST	8 cut(s)	12, 91, 122, 161, 168, 244, 304, 408
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	3 cut(s)	34, 382, 397
TseFI	GTSAC	2 cut(s)	25, 43
TseI	GCWGC	2 cut(s)	166, 179
Tsp45I	GTSAC	2 cut(s)	25, 43
TspDTI	ATGAA	4 cut(s)	32, 67, 279, 300
TspRI	CASTG	3 cut(s)	34, 382, 397
Tth111I	GACNNNGTC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.