Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

27137767 .. 27139061

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCACCAGCTCCACTGGTTCAGCCCGAGGCCGCCGCCGCCGCCGAAGAGGTTCTCTCCGCCGAACAGCTCCTCAAGAACTCTAATCAGAACAAGGAAGGAGAGGAAGTCGTGGTCGAGGACGTCAAGGACGACGACAATGACGACGACGAGGATGACGAGGATGACGACGACGACAACAAGGAAGACGGCGGTAAAGGTGGAAATGAGTCATCGAAACAGTGTAGAAGCGAGAAGAAGAGTCGGAAGGCAATGCTGAAGCTGGGTATGAAGCCTGTTACTGGTGTTAGCAGGGTGACAATCAAGAAGACCAAAAACATACTATTTGTCATATCGAAACCCGATGCCTTCAAGAGCCCAAACTCTGATACCTATGTCATATTTGGCGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTGCAGACGCAGGCTGCCCAGCAGTTCAGGATGCCGGACATGAGTTCTGTGATGGGGAAACCAGCGATTTCTGGAGCAGCTGCTGGACCTCAGGCAGATGAAGAAGAGGAAGAGGTTGATGAAACCGGGGTGGAACCTAAGGACATTGATTTGGTCATGACACAAGCTGGGGTGTCAAGGAGCAAGGCCGTCAAGGCTCTCAAGACACACAGCGGGGACATTGTCAGCGCTATCATGGAACTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

223

Amino Acids

23.89

Weight (kDa)

4.43

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AciI	CCGC	7 cut(s)	33, 36, 39, 42, 60, 192, 630
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	123
AfeI	AGCGCT	1 cut(s)	646
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	7 cut(s)	11, 70, 262, 411, 418, 497, 584
AluI	AGCT	7 cut(s)	11, 70, 262, 411, 418, 497, 584
Alw21I	GWGCWC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	26
Aor51HI	AGCGCT	1 cut(s)	646
AoxI	GGCC	3 cut(s)	30, 390, 603
ApeKI	GCWGC	4 cut(s)	418, 431, 494, 497
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	647
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	307, 652
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	503
AxyI	CCTNAGG	2 cut(s)	507, 555
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BanII	GRGCYC	2 cut(s)	359, 413
BbsI	GAAGAC	2 cut(s)	192, 314
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	405, 418, 484, 506
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	2 cut(s)	205, 590
BcnI	CCSGG	1 cut(s)	544
BfmI	CTRYAG	1 cut(s)	419
BfoI	RGCGCY	1 cut(s)	648
BglI	GCCNNNNNGGC	1 cut(s)	611
BisI	GCNGC	8 cut(s)	33, 36, 39, 42, 419, 432, 495, 498
BlsI	GCNGC	8 cut(s)	34, 37, 40, 43, 420, 433, 496, 499
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	2 cut(s)	334, 438
BpiI	GAAGAC	2 cut(s)	192, 314
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	59, 602
BpuMI	CCSGG	1 cut(s)	544
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	27, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	21, 286
Bse21I	CCTNAGG	2 cut(s)	507, 555
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	27, 543
BseGI	GGATG	3 cut(s)	160, 169, 453
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	428, 521
BseNI	ACTGG	2 cut(s)	21, 286
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	4 cut(s)	405, 418, 484, 506
BseYI	CCCAGC	3 cut(s)	262, 435, 584
BshFI	GGCC	3 cut(s)	32, 392, 605
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	452, 543
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	3 cut(s)	32, 392, 605
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	359, 413
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	7 cut(s)	33, 36, 39, 42, 60, 192, 630
BspANI	GGCC	3 cut(s)	32, 392, 605
BspCNI	CTCAG	2 cut(s)	427, 520
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	21, 286
BssECI	CCNNGG	2 cut(s)	27, 543
BssMI	GATC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	4 cut(s)	42, 233, 516, 522
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	414, 507, 555
BstF5I	GGATG	3 cut(s)	160, 169, 453
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 41, 424, 611
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	4 cut(s)	405, 418, 484, 506
BstV2I	GAAGAC	2 cut(s)	192, 314
Bsu36I	CCTNAGG	2 cut(s)	507, 555
BsuRI	GGCC	3 cut(s)	32, 392, 605
BtsCI	GGATG	3 cut(s)	160, 169, 453
BtsIMutI	CAGTG	2 cut(s)	14, 227
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	433
CviAII	CATG	3 cut(s)	457, 574, 652
DdeI	CTNAG	3 cut(s)	414, 507, 555
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eam1104I	CTCTTC	4 cut(s)	42, 233, 516, 522
EarI	CTCTTC	4 cut(s)	42, 233, 516, 522
EciI	GGCGGA	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	411
Eco24I	GRGCYC	2 cut(s)	359, 413
Eco47I	GGWCC	1 cut(s)	503
Eco47III	AGCGCT	1 cut(s)	646
Eco53kI	GAGCTC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	278
Eco81I	CCTNAGG	2 cut(s)	507, 555
Eco88I	CYCGRG	1 cut(s)	26
EcoICRI	GAGCTC	1 cut(s)	411
EcoT38I	GRGCYC	2 cut(s)	359, 413
FaeI	CATG	3 cut(s)	460, 577, 655
FaiI	YATR	8 cut(s)	269, 320, 332, 375, 380, 458, 575, 653
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	3 cut(s)	456, 573, 651
FauI	CCCGC	1 cut(s)	623
Fnu4HI	GCNGC	8 cut(s)	33, 36, 39, 42, 419, 432, 495, 498
FokI	GGATG	3 cut(s)	167, 176, 460
FriOI	GRGCYC	2 cut(s)	359, 413
Fsp4HI	GCNGC	8 cut(s)	33, 36, 39, 42, 419, 432, 495, 498
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	8 cut(s)	33, 36, 39, 42, 419, 432, 495, 498
GsaI	CCCAGC	3 cut(s)	266, 439, 588
GsuI	CTGGAG	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	3 cut(s)	32, 392, 605
HapII	CCGG	2 cut(s)	452, 543
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	647
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	460, 577, 655
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HinfI	GANTC	2 cut(s)	209, 241
HpaII	CCGG	2 cut(s)	452, 543
HphI	GGTGA	2 cut(s)	307, 652
Hpy188I	TCNGA	3 cut(s)	90, 246, 367
Hpy188III	TCNNGA	7 cut(s)	76, 304, 352, 445, 489, 574, 619
Hpy99I	CGWCG	5 cut(s)	137, 149, 152, 173, 176
HpyAV	CCTTC	3 cut(s)	92, 241, 358
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 41, 424, 611
HpyF3I	CTNAG	3 cut(s)	414, 507, 555
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	460, 577, 655
HspAI	GCGC	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	4 cut(s)	16, 75, 491, 597
Lsp1109I	GCAGC	4 cut(s)	405, 418, 484, 506
LweI	GCATC	2 cut(s)	334, 438
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	3, 277, 295
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	8 cut(s)	59, 197, 247, 250, 319, 530, 533, 539
MhlI	GDGCHC	2 cut(s)	359, 413
MlyI	GAGTC	2 cut(s)	218, 250
MmeI	TCCRAC	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	667
MspA1I	CMGCKG	3 cut(s)	418, 497, 630
MspI	CCGG	2 cut(s)	452, 543
MspR9I	CCNGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	4 cut(s)	38, 41, 424, 611
NciI	CCSGG	1 cut(s)	544
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	3 cut(s)	460, 577, 655
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	2 cut(s)	3, 295
PagI	TCATGA	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	4 cut(s)	129, 141, 156, 165
PdmI	GAANNNNTTC	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	8 cut(s)	34, 37, 40, 43, 420, 433, 496, 499
PleI	GAGTC	2 cut(s)	217, 249
PpsI	GAGTC	2 cut(s)	217, 249
Psp124BI	GAGCTC	1 cut(s)	413
PspFI	CCCAGC	3 cut(s)	262, 435, 584
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	423
PstNI	CAGNNNCTG	1 cut(s)	500
PsyI	GACNNNGTC	1 cut(s)	638
PvuII	CAGCTG	2 cut(s)	418, 497
SacI	GAGCTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	8 cut(s)	33, 36, 39, 42, 419, 432, 495, 498
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	2 cut(s)	218, 250
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	2 cut(s)	359, 413
SfaNI	GCATC	2 cut(s)	334, 438
SfcI	CTRYAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	74, 617
SmoI	CTYRAG	2 cut(s)	74, 617
SsiI	CCGC	7 cut(s)	33, 36, 39, 42, 60, 192, 630
SstI	GAGCTC	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	117, 215, 335, 399
TauI	GCSGC	4 cut(s)	35, 38, 41, 44
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	2 cut(s)	21, 227
TseFI	GTSAC	2 cut(s)	3, 295
TseI	GCWGC	4 cut(s)	418, 431, 494, 497
Tsp45I	GTSAC	2 cut(s)	3, 295
TspDTI	ATGAA	3 cut(s)	284, 531, 552
TspRI	CASTG	2 cut(s)	21, 227
Tth111I	GACNNNGTC	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	51
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.