Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

36007405 .. 36009168

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1301300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCACCGGCTCCACTGGTTCAGCCAGAGGCCGGCGCCGCCGTCGAAGAGGTTCTCTCCGCTGAACAGCTCCTCAAGAACTCTAATCAGAACAAGGAAGAAGAGGAAGTCGTGGTCGAGGACGTCAAGGACGACGACAATGACGACGACGACGAGGAGGATGACGACGACGAAGACAAGGAAGACGGCGGTCAAGATGGAAATGAGTCATCGAAACAGAGCAGAAGCGAGAAGAAGAGTCGGAAGGCAATGCTGAAGCTGGGTATGAAGCCTGTTACTGGTGTTAGCAGGGTGACAATCAAGAAGACCAAAAACATAATATTTGTCATATCGAAACCTGATGCCTTCAAGAGTCCAAACTCTGATACCTATGTCATATTTGGCGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCGGACATGAGTTCTGTGATGGGAAAACCAGAGATTTCTGGAGCAGCTGCTGGACCTCAGGCAGATGAAGAAGAGGAAGAGGTTGATGAAACCGGGGTGGAACCTAAGGACATTGATTTGGTCATGACACAAGCTGGGGTGTCAAGGAGCAAGGCCGTCAAGGCTCTCAAGACACACAGCGGGGACATTGTCAGCGCTATCATGGAACTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

222

Amino Acids

23.98

Weight (kDa)

4.34

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	77 - 132	7.2e-22	NAC domain
UBA_HYPK	PF19026	181 - 220	5.9e-13	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	4 cut(s)	39, 60, 189, 627
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	2 cut(s)	36, 123
AfeI	AGCGCT	1 cut(s)	643
AfiI	CCNNNNNNNGG	2 cut(s)	32, 278
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	6 cut(s)	70, 259, 408, 415, 494, 581
AluI	AGCT	6 cut(s)	70, 259, 408, 415, 494, 581
Alw21I	GWGCWC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	497
Aor51HI	AGCGCT	1 cut(s)	643
AoxI	GGCC	3 cut(s)	30, 387, 600
ApeKI	GCWGC	4 cut(s)	415, 428, 491, 494
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	38, 644
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	304, 649
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	2 cut(s)	504, 552
BaeI	ACNNNNGTAYC	2 cut(s)	357, 390
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	410
BbsI	GAAGAC	3 cut(s)	180, 189, 311
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	402, 415, 481, 503
BccI	CCATC	2 cut(s)	191, 460
BceAI	ACGGC	3 cut(s)	26, 202, 587
BcnI	CCSGG	1 cut(s)	541
BfmI	CTRYAG	1 cut(s)	416
BfoI	RGCGCY	2 cut(s)	39, 645
BglI	GCCNNNNNGGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	39, 416, 429, 492, 495
BlsI	GCNGC	5 cut(s)	40, 417, 430, 493, 496
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	12, 37, 549
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	2 cut(s)	331, 435
BoxI	GACNNNNGTC	1 cut(s)	189
BpiI	GAAGAC	3 cut(s)	180, 189, 311
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	59, 599
BpuMI	CCSGG	1 cut(s)	541
BsaHI	GRCGYC	2 cut(s)	36, 123
BsaJI	CCNNGG	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 278
Bse118I	RCCGGY	2 cut(s)	7, 32
Bse1I	ACTGG	2 cut(s)	21, 283
Bse21I	CCTNAGG	2 cut(s)	504, 552
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	166, 450
BseLI	CCNNNNNNNGG	2 cut(s)	32, 278
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	425, 518
BseNI	ACTGG	2 cut(s)	21, 283
BseRI	GAGGAG	2 cut(s)	62, 170
BseXI	GCAGC	4 cut(s)	402, 415, 481, 503
BseYI	CCCAGC	3 cut(s)	259, 432, 581
BshFI	GGCC	3 cut(s)	32, 389, 602
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	4 cut(s)	8, 33, 449, 540
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	32, 278
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	3 cut(s)	32, 389, 602
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	4 cut(s)	39, 60, 189, 627
BspANI	GGCC	3 cut(s)	32, 389, 602
BspCNI	CTCAG	2 cut(s)	424, 517
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	12, 37, 549
BspMAI	CTGCAG	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	7, 32
BsrI	ACTGG	2 cut(s)	21, 283
BssAI	RCCGGY	2 cut(s)	7, 32
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	1 cut(s)	393
BssNI	GRCGYC	2 cut(s)	36, 123
Bst6I	CTCTTC	5 cut(s)	42, 96, 230, 513, 519
BstACI	GRCGYC	2 cut(s)	36, 123
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	411, 504, 552
BstF5I	GGATG	2 cut(s)	166, 450
BstH2I	RGCGCY	2 cut(s)	39, 645
BstHHI	GCGC	2 cut(s)	38, 644
BstKTI	GATC	1 cut(s)	396
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 608
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	4 cut(s)	402, 415, 481, 503
BstV2I	GAAGAC	3 cut(s)	180, 189, 311
Bsu36I	CCTNAGG	2 cut(s)	504, 552
BsuRI	GGCC	3 cut(s)	32, 389, 602
BtsCI	GGATG	2 cut(s)	166, 450
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	2 cut(s)	38, 644
Cfr10I	RCCGGY	2 cut(s)	7, 32
Cfr13I	GGNCC	1 cut(s)	500
CviAII	CATG	3 cut(s)	454, 571, 649
DdeI	CTNAG	3 cut(s)	411, 504, 552
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
Eam1104I	CTCTTC	5 cut(s)	42, 96, 230, 513, 519
EarI	CTCTTC	5 cut(s)	42, 96, 230, 513, 519
Ecl136II	GAGCTC	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	500
Eco47III	AGCGCT	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	2 cut(s)	504, 552
EcoICRI	GAGCTC	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	410
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
FaeI	CATG	3 cut(s)	457, 574, 652
FaiI	YATR	8 cut(s)	266, 317, 329, 372, 377, 455, 572, 650
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	3 cut(s)	453, 570, 648
FauI	CCCGC	1 cut(s)	620
Fnu4HI	GCNGC	5 cut(s)	39, 416, 429, 492, 495
FokI	GGATG	2 cut(s)	173, 457
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	5 cut(s)	39, 416, 429, 492, 495
GlaI	GCGC	2 cut(s)	37, 643
GluI	GCNGC	5 cut(s)	39, 416, 429, 492, 495
GsaI	CCCAGC	3 cut(s)	263, 436, 585
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	2 cut(s)	39, 645
HaeIII	GGCC	3 cut(s)	32, 389, 602
HapII	CCGG	4 cut(s)	8, 33, 449, 540
HhaI	GCGC	2 cut(s)	38, 644
Hin1I	GRCGYC	2 cut(s)	36, 123
Hin1II	CATG	3 cut(s)	457, 574, 652
Hin6I	GCGC	2 cut(s)	36, 642
HinP1I	GCGC	2 cut(s)	36, 642
HinfI	GANTC	3 cut(s)	206, 238, 352
HpaII	CCGG	4 cut(s)	8, 33, 449, 540
HphI	GGTGA	2 cut(s)	304, 649
Hpy188I	TCNGA	3 cut(s)	90, 243, 364
Hpy188III	TCNNGA	8 cut(s)	76, 194, 301, 349, 442, 486, 571, 616
Hpy99I	CGWCG	7 cut(s)	47, 137, 149, 152, 155, 170, 173
HpyAV	CCTTC	2 cut(s)	238, 355
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 608
HpyF3I	CTNAG	3 cut(s)	411, 504, 552
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	2 cut(s)	36, 123
Hsp92II	CATG	3 cut(s)	457, 574, 652
HspAI	GCGC	2 cut(s)	36, 642
KasI	GGCGCC	1 cut(s)	35
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	4 cut(s)	16, 75, 488, 594
Lsp1109I	GCAGC	4 cut(s)	402, 415, 481, 503
LweI	GCATC	2 cut(s)	331, 435
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	3, 274, 292
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	410
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	3 cut(s)	215, 247, 361
MmeI	TCCRAC	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	664
MspA1I	CMGCKG	4 cut(s)	62, 415, 494, 627
MspI	CCGG	4 cut(s)	8, 33, 449, 540
MspR9I	CCNGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	38, 608
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	1 cut(s)	393
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	3 cut(s)	457, 574, 652
NlaIV	GGNNCC	3 cut(s)	12, 37, 549
NmuCI	GTSAC	2 cut(s)	3, 292
PagI	TCATGA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 141, 150
PdiI	GCCGGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	5 cut(s)	40, 417, 430, 493, 496
PleI	GAGTC	3 cut(s)	214, 246, 360
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	3 cut(s)	214, 246, 360
PshAI	GACNNNNGTC	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	410
PspFI	CCCAGC	3 cut(s)	259, 432, 581
PspN4I	GGNNCC	3 cut(s)	12, 37, 549
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	497
PsyI	GACNNNGTC	1 cut(s)	635
PvuII	CAGCTG	2 cut(s)	415, 494
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	664
SatI	GCNGC	5 cut(s)	39, 416, 429, 492, 495
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	3 cut(s)	215, 247, 361
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	410
SfaNI	GCATC	2 cut(s)	331, 435
SfcI	CTRYAG	1 cut(s)	416
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	74, 614
SmoI	CTYRAG	2 cut(s)	74, 614
SsiI	CCGC	4 cut(s)	39, 60, 189, 627
SspDI	GGCGCC	1 cut(s)	35
SspI	AATATT	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	539
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	5 cut(s)	45, 117, 212, 332, 396
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	664
Tru9I	TTAA	1 cut(s)	664
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	3, 292
TseI	GCWGC	4 cut(s)	415, 428, 491, 494
Tsp45I	GTSAC	2 cut(s)	3, 292
TspDTI	ATGAA	3 cut(s)	281, 528, 549
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	51
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.