Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

18340934 .. 18342644

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCTCCTCCTCCTGCTGTAGTCACTGAATCTGCCGATGGACAACCTGAGCAACCACCGGTTACCGCCATTGCTGAAGAGCTGGAGAAAAAGCTTCAGACTGATGAACCGATTGTAGAAGATGTTAAAGATGATGAAGACGATGATGATGATGACGAAGAAGAGGAAGACGACGATGCTCAAGGTGTAAGTGGAAGTTCAAAGCAGAGTAGAAGTGAAAAGAAGAGTAGGAAGGCGATGTTGAAGCTCGGTATGAAACCTGTCACTGGTGTTAGTCGAGTAACCATCAAGAGAACGAAAAACGTTCTCTTCTTTATCTCTAAGCCTGATGTCTTTAAGAGCCCGCATTCAGAAACCTATGTTATATTCGGTGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTTCAAACGCAAGCTGCTCAACAGTTTAGGATGCCTGAAATTGGAGCCACATCTCAGAGAGCAGAGGCATCGACAGCCACTGTAGAAGCACAGGTGGAAGAAGATGAAGAGGAAATCGATGAGACCGGTGTGGAGGCTCGTGACATTGACTTGGTCATGACTCAGGCTGGAGTTTCTCGTAGCAAAGCGGTTAAAGCACTCAAGAGTCACGATGGAGACATTGTAAGTGCAATAATGGAACTCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

217

Amino Acids

23.71

Weight (kDa)

4.37

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	73 - 128	5.6e-22	NAC domain
UBA_HYPK	PF19026	177 - 216	1.1e-13	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	66, 344, 590
AclI	AACGTT	1 cut(s)	303
AcuI	CTGAAG	2 cut(s)	80, 96
AfiI	CCNNNNNNNGG	2 cut(s)	266, 443
AgeI	ACCGGT	2 cut(s)	58, 527
AgsI	TTSAA	3 cut(s)	201, 244, 407
AluBI	AGCT	6 cut(s)	82, 94, 247, 396, 403, 416
AluI	AGCT	6 cut(s)	82, 94, 247, 396, 403, 416
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	3 cut(s)	9, 518, 612
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	416
AsiGI	ACCGGT	2 cut(s)	58, 527
AsuHPI	GGTGA	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	344, 398
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	144, 174
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	3 cut(s)	32, 293, 608
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BcoDI	GTCTC	3 cut(s)	9, 518, 612
BfmI	CTRYAG	2 cut(s)	18, 483
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	448
BmsI	GCATC	3 cut(s)	166, 423, 479
BpiI	GAAGAC	2 cut(s)	144, 174
BpmI	CTGGAG	2 cut(s)	104, 591
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	165, 587
Bsa29I	ATCGAT	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	518
BsaWI	WCCGGW	2 cut(s)	58, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 443
Bse118I	RCCGGY	2 cut(s)	58, 527
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	519
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	266, 443
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	4 cut(s)	39, 413, 470, 578
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	1 cut(s)	377
BshTI	ACCGGT	2 cut(s)	58, 527
BshVI	ATCGAT	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	59, 528
BslI	CCNNNNNNNGG	2 cut(s)	266, 443
BsmAI	GTCTC	3 cut(s)	9, 518, 612
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	344, 398
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	66, 344, 590
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	4 cut(s)	40, 412, 469, 577
BspDI	ATCGAT	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	2 cut(s)	58, 527
BsrI	ACTGG	1 cut(s)	271
BssAI	RCCGGY	2 cut(s)	58, 527
BssMI	GATC	1 cut(s)	381
BssSI	CACGAG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	426, 484
Bst6I	CTCTTC	5 cut(s)	72, 156, 218, 314, 504
BstC8I	GCNNGC	2 cut(s)	344, 414
BstDEI	CTNAG	5 cut(s)	48, 321, 399, 456, 564
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	438
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	3 cut(s)	9, 518, 612
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 476, 596
BstPI	GGTNACC	1 cut(s)	61
BstSFI	CTRYAG	2 cut(s)	18, 483
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	2 cut(s)	144, 174
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	519
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	24, 264, 480
Cac8I	GCNNGC	2 cut(s)	344, 414
CaiI	CAGNNNCTG	1 cut(s)	482
CciI	TCATGA	1 cut(s)	558
Cfr10I	RCCGGY	2 cut(s)	58, 527
ClaI	ATCGAT	1 cut(s)	519
CspAI	ACCGGT	2 cut(s)	58, 527
CviAII	CATG	1 cut(s)	559
DdeI	CTNAG	5 cut(s)	48, 321, 399, 456, 564
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eam1104I	CTCTTC	5 cut(s)	72, 156, 218, 314, 504
EarI	CTCTTC	5 cut(s)	72, 156, 218, 314, 504
Ecl136II	GAGCTC	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	344, 398
Eco31I	GGTCTC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	2 cut(s)	80, 96
Eco91I	GGTNACC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	396
EcoO65I	GGTNACC	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	344, 398
FaeI	CATG	1 cut(s)	562
FaiI	YATR	4 cut(s)	254, 360, 365, 560
FatI	CATG	1 cut(s)	558
FauI	CCCGC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	2 cut(s)	344, 398
Fsp4HI	GCNGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	104, 591
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	59, 528
Hin1II	CATG	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	29, 562, 607
HpaII	CCGG	2 cut(s)	59, 528
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	3 cut(s)	99, 352, 459
Hpy188III	TCNNGA	5 cut(s)	289, 542, 559, 604, 611
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	426, 484
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 476, 596
HpyF3I	CTNAG	5 cut(s)	48, 321, 399, 456, 564
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	562
Kzo9I	GATC	1 cut(s)	381
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	3 cut(s)	166, 423, 479
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	6 cut(s)	22, 61, 262, 280, 542, 608
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	344, 398
MluCI	AATT	1 cut(s)	441
MlyI	GAGTC	2 cut(s)	556, 616
MnlI	CCTC	8 cut(s)	18, 21, 157, 367, 379, 460, 505, 529
MseI	TTAA	3 cut(s)	126, 336, 594
MspI	CCGG	2 cut(s)	59, 528
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	409, 476, 596
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	4 cut(s)	22, 262, 542, 608
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	72
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	29
PflFI	GACNNNGTC	1 cut(s)	554
PinAI	ACCGGT	2 cut(s)	58, 527
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	2 cut(s)	556, 615
PpsI	GAGTC	2 cut(s)	556, 615
Psp124BI	GAGCTC	1 cut(s)	398
Psp1406I	AACGTT	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	482
PsyI	GACNNNGTC	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	126, 336, 594
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	1 cut(s)	381
SchI	GAGTC	2 cut(s)	556, 616
SduI	GDGCHC	2 cut(s)	344, 398
SfaNI	GCATC	3 cut(s)	166, 423, 479
SfcI	CTRYAG	2 cut(s)	18, 483
SmlI	CTYRAG	2 cut(s)	180, 602
SmoI	CTYRAG	2 cut(s)	180, 602
Sse9I	AATT	1 cut(s)	441
SsiI	CCGC	3 cut(s)	66, 344, 590
SstI	GAGCTC	1 cut(s)	398
TaaI	ACNGT	2 cut(s)	426, 484
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	4 cut(s)	277, 384, 473, 519
TasI	AATT	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	3 cut(s)	126, 336, 594
Tru9I	TTAA	3 cut(s)	126, 336, 594
TscAI	CASTG	3 cut(s)	31, 271, 487
TseFI	GTSAC	4 cut(s)	22, 262, 542, 608
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	4 cut(s)	22, 262, 542, 608
TspDTI	ATGAA	4 cut(s)	120, 150, 269, 522
TspRI	CASTG	3 cut(s)	31, 271, 487
Tth111I	GACNNNGTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.