Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Reverse (-)

998521 .. 999978

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCGCCGGCGCTCGTCGAGGAGGAGCTCGTCGGTGAGGTCCCGTCCACCGAGCAATCCCTCAAGAACGGCCTTCAGTGTGTTCCAGGTGGAAATGAGTCTTCGAAGCAAAGCAGGAGTGAGAAGAAGAGCCGTAAGGCAATGTTGAAGCTGGGAATGAAACAAGTCACTGGTGTTAGCAGGGTCACCATCAAGAGAACCAAAAACATTCTGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAACTCTGAGACCTATGTCATATTTGGTGAGGCCAAGATTGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGATGGCGAAACCAGAGATTTCTGGAGCTGGTACTGGAGCCCAAGCAGATGAAGAGGAAGAAGAGATTGATGAAACCGGTGTTGAACCTCGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCAAGGAGCAAGGCAGTCAAGGCTCTCAAGACGCACAGTGGGGACATTGTCAGTGCCATCATGGAGCTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

185

Amino Acids

20.05

Weight (kDa)

5.24

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	41 - 96	3.7e-22	NAC domain
UBA_HYPK	PF19026	145 - 184	1.4e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	388
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	148, 241, 440
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	6 cut(s)	28, 151, 300, 307, 383, 547
AluI	AGCT	6 cut(s)	28, 151, 300, 307, 383, 547
Alw21I	GWGCWC	3 cut(s)	30, 302, 549
Alw26I	GTCTC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	70, 279
ApeKI	GCWGC	2 cut(s)	307, 320
AsiGI	ACCGGT	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	4 cut(s)	47, 178, 287, 541
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	40
BanII	GRGCYC	4 cut(s)	30, 302, 397, 549
BbsI	GAAGAC	2 cut(s)	93, 229
Bbv12I	GWGCWC	3 cut(s)	30, 302, 549
BbvI	GCAGC	2 cut(s)	294, 307
BccI	CCATC	3 cut(s)	197, 352, 545
BceAI	ACGGC	2 cut(s)	85, 117
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	2 cut(s)	308, 321
BlsI	GCNGC	2 cut(s)	309, 322
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	42, 394
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	327
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	93, 229
BpmI	CTGGAG	2 cut(s)	399, 411
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	2 cut(s)	47, 491
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	431
Bse118I	RCCGGY	2 cut(s)	7, 431
Bse1I	ACTGG	2 cut(s)	175, 394
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	246, 317
BseNI	ACTGG	2 cut(s)	175, 394
BseRI	GAGGAG	2 cut(s)	35, 38
BseXI	GCAGC	2 cut(s)	294, 307
BseYI	CCCAGC	3 cut(s)	151, 324, 473
BshFI	GGCC	2 cut(s)	72, 281
BshTI	ACCGGT	1 cut(s)	431
BsiHKAI	GWGCWC	3 cut(s)	30, 302, 549
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	8, 432
BslFI	GGGAC	3 cut(s)	26, 461, 536
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	3 cut(s)	26, 461, 536
BsnI	GGCC	2 cut(s)	72, 281
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	4 cut(s)	30, 302, 397, 549
BspANI	GGCC	2 cut(s)	72, 281
BspCNI	CTCAG	2 cut(s)	247, 316
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	42, 394
BspMAI	CTGCAG	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	2 cut(s)	7, 431
BsrI	ACTGG	2 cut(s)	175, 394
BssAI	RCCGGY	2 cut(s)	7, 431
BssECI	CCNNGG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	3 cut(s)	122, 402, 411
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	255, 303
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	87
BstPAI	GACNNNNGTC	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	294, 307
BstV2I	GAAGAC	2 cut(s)	93, 229
BsuRI	GGCC	2 cut(s)	72, 281
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	4 cut(s)	83, 168, 523, 538
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	2 cut(s)	7, 431
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	387
CspAI	ACCGGT	1 cut(s)	431
CviAII	CATG	3 cut(s)	346, 463, 541
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	2 cut(s)	255, 303
Eam1104I	CTCTTC	3 cut(s)	122, 402, 411
EarI	CTCTTC	3 cut(s)	122, 402, 411
Ecl136II	GAGCTC	3 cut(s)	28, 300, 547
Eco24I	GRGCYC	4 cut(s)	30, 302, 397, 549
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	3 cut(s)	28, 300, 547
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	184
EcoICRI	GAGCTC	3 cut(s)	28, 300, 547
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	4 cut(s)	30, 302, 397, 549
FaeI	CATG	3 cut(s)	349, 466, 544
FaiI	YATR	5 cut(s)	264, 269, 347, 464, 542
FaqI	GGGAC	3 cut(s)	26, 461, 536
FatI	CATG	3 cut(s)	345, 462, 540
Fnu4HI	GCNGC	2 cut(s)	308, 321
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	4 cut(s)	30, 302, 397, 549
Fsp4HI	GCNGC	2 cut(s)	308, 321
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	308, 321
GsaI	CCCAGC	3 cut(s)	155, 328, 477
GsuI	CTGGAG	2 cut(s)	399, 411
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	72, 281
HapII	CCGG	2 cut(s)	8, 432
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	349, 466, 544
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	2 cut(s)	98, 244
HpaII	CCGG	2 cut(s)	8, 432
HphI	GGTGA	4 cut(s)	47, 178, 287, 541
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	9 cut(s)	64, 193, 223, 241, 334, 378, 446, 463, 508
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	2 cut(s)	20, 35
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	255, 303
Hsp92II	CATG	3 cut(s)	349, 466, 544
HspAI	GCGC	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	5 cut(s)	25, 380, 392, 486, 544
Lsp1109I	GCAGC	2 cut(s)	294, 307
LweI	GCATC	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	166, 184
MboII	GAAGA	7 cut(s)	93, 136, 139, 229, 419, 425, 428
MhlI	GDGCHC	4 cut(s)	30, 302, 397, 549
MlyI	GAGTC	2 cut(s)	107, 253
MnlI	CCTC	8 cut(s)	13, 16, 31, 71, 271, 283, 403, 453
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	2 cut(s)	8, 432
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	500
NaeI	GCCGGC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	349, 466, 544
NlaIV	GGNNCC	2 cut(s)	42, 394
NmuCI	GTSAC	2 cut(s)	166, 184
NspV	TTCGAA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	527
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	309, 322
PleI	GAGTC	2 cut(s)	106, 252
PpsI	GAGTC	2 cut(s)	106, 252
PpuMI	RGGWCCY	1 cut(s)	40
PshAI	GACNNNNGTC	1 cut(s)	263
Psp124BI	GAGCTC	3 cut(s)	30, 302, 549
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	184
PspFI	CCCAGC	3 cut(s)	151, 324, 473
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	42, 394
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SacI	GAGCTC	3 cut(s)	30, 302, 549
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	2 cut(s)	308, 321
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	107, 253
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	4 cut(s)	30, 302, 397, 549
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	104
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	62, 506
SmoI	CTYRAG	2 cut(s)	62, 506
SstI	GAGCTC	3 cut(s)	30, 302, 549
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	3 cut(s)	18, 104, 224
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	4 cut(s)	83, 175, 523, 538
TseFI	GTSAC	2 cut(s)	166, 184
TseI	GCWGC	2 cut(s)	307, 320
Tsp45I	GTSAC	2 cut(s)	166, 184
TspDTI	ATGAA	4 cut(s)	173, 208, 420, 441
TspRI	CASTG	4 cut(s)	83, 175, 523, 538
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.