Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Reverse (-)

6477876 .. 6479171

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCCAGGTCCAGTTATTGAGGAAGTGAATGAGGAGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGAAGGAGAACGATGTTGTTGTTGAGGATGTGAAAGATGGAGACGAAGACGATGATGATGTTGATGACGACGACGATGAGATTGCTGATGGAGCTGGTGAGAATGAGGCTTCCAAGCAAAGTAGAAGCGAGAAGAAAAGCCGAAAGGCGATGCTGAAACTCGGAATGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAGACCTATGTGATATTCGGTGAGGCTAAGATTGATGACATGAGCTCTCAGCTACAAGCACAAGCTGCTCAGAGGTTCAAGATGCCTGACGTTGCGTCTATGATCCCCAACACTGATGGTTCTGAAGCAGCCACGGTTGCACAAGAGGAGGAAGACGATGAAGATGTTGATGAGACTGGTGTTGAAGCCAAGGACATTGATCTTGTGATGACTCAAGCCGGTGTCTCGAGGCCCAAGGCTGTTAAGGCTCTTAAAGAGAGTAACGGAGATATTGTTTCCGCCATTATGGAACTCACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

212

Amino Acids

23.17

Weight (kDa)

4.25

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	67 - 122	5.4e-23	NAC domain
UBA_HYPK	PF19026	171 - 210	4.8e-14	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	615
AclWI	GGATC	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	322, 415, 521
AhdI	GACNNNNNGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	5 cut(s)	70, 167, 381, 388, 401
AluI	AGCT	5 cut(s)	70, 167, 381, 388, 401
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	4 cut(s)	108, 332, 503, 565
AlwI	GGATC	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	2 cut(s)	401, 464
AspS9I	GGNCC	2 cut(s)	8, 567
AsuHPI	GGTGA	2 cut(s)	182, 368
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	383
BbsI	GAAGAC	2 cut(s)	126, 495
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	388, 476
BccI	CCATC	3 cut(s)	104, 155, 446
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	4 cut(s)	108, 332, 503, 565
BisI	GCNGC	2 cut(s)	402, 465
BlsI	GCNGC	2 cut(s)	403, 466
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	8
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	8, 567
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	3 cut(s)	37, 213, 408
BpiI	GAAGAC	2 cut(s)	126, 495
BpmI	CTGGAG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	468, 525, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	11, 517
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	468, 525, 570
BseGI	GGATG	3 cut(s)	52, 106, 319
BseMII	CTCAG	3 cut(s)	327, 398, 419
BseNI	ACTGG	2 cut(s)	11, 517
BseRI	GAGGAG	2 cut(s)	47, 497
BseXI	GCAGC	2 cut(s)	388, 476
BshFI	GGCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	383
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	311, 555
BsmAI	GTCTC	4 cut(s)	108, 332, 503, 565
BsmBI	CGTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	568
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	278, 438, 535
BspACI	CCGC	1 cut(s)	615
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	3 cut(s)	328, 397, 418
BspPI	GGATC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	11, 517
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	468, 525, 570
BssMI	GATC	3 cut(s)	278, 438, 535
BssT1I	CCWWGG	2 cut(s)	525, 570
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstDEI	CTNAG	4 cut(s)	336, 363, 384, 405
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	52, 106, 319
BstKTI	GATC	3 cut(s)	281, 441, 538
BstMAI	GTCTC	4 cut(s)	108, 332, 503, 565
BstMBI	GATC	3 cut(s)	278, 438, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 164, 401, 473, 581
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	2 cut(s)	388, 476
BstV2I	GAAGAC	2 cut(s)	126, 495
BsuRI	GGCC	1 cut(s)	568
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	52, 106, 319
BtsIMutI	CAGTG	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	2 cut(s)	8, 567
CseI	GACGC	1 cut(s)	420
CviAII	CATG	1 cut(s)	376
DdeI	CTNAG	4 cut(s)	336, 363, 384, 405
DpnI	GATC	3 cut(s)	280, 440, 537
DpnII	GATC	3 cut(s)	278, 438, 535
DriI	GACNNNNNGTC	1 cut(s)	430
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EciI	GGCGGA	1 cut(s)	604
Ecl136II	GAGCTC	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	525, 570
Eco24I	GRGCYC	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	525, 570
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	2 cut(s)	525, 570
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	1 cut(s)	379
FaiI	YATR	6 cut(s)	44, 345, 377, 437, 623, 637
FatI	CATG	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	402, 465
FokI	GGATG	3 cut(s)	59, 113, 326
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	402, 465
GluI	GCNGC	2 cut(s)	402, 465
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	2 cut(s)	311, 555
HgaI	GACGC	1 cut(s)	420
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	2 cut(s)	325, 547
HpaII	CCGG	2 cut(s)	311, 555
HphI	GGTGA	2 cut(s)	182, 368
Hpy188I	TCNGA	5 cut(s)	236, 330, 337, 408, 460
Hpy188III	TCNNGA	6 cut(s)	73, 274, 304, 322, 415, 562
Hpy99I	CGWCG	2 cut(s)	146, 149
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 164, 401, 473, 581
HpyF3I	CTNAG	4 cut(s)	336, 363, 384, 405
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	278, 438, 535
LmnI	GCTCC	2 cut(s)	75, 164
LpnPI	CCDG	9 cut(s)	18, 24, 86, 153, 258, 324, 435, 498, 568
Lsp1109I	GCAGC	2 cut(s)	388, 476
LweI	GCATC	3 cut(s)	37, 213, 408
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	247, 265, 596
MalI	GATC	3 cut(s)	280, 440, 537
MboI	GATC	3 cut(s)	278, 438, 535
MboII	GAAGA	4 cut(s)	131, 217, 500, 509
MhlI	GDGCHC	1 cut(s)	383
MlyI	GAGTC	2 cut(s)	334, 541
MseI	TTAA	3 cut(s)	54, 579, 588
MspI	CCGG	2 cut(s)	311, 555
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	67, 164, 401, 473, 581
NdeII	GATC	3 cut(s)	278, 438, 535
NlaIII	CATG	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	403, 466
PleI	GAGTC	2 cut(s)	333, 541
PpsI	GAGTC	2 cut(s)	333, 541
Psp124BI	GAGCTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	8, 567
SacI	GAGCTC	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	54, 579, 588
SatI	GCNGC	2 cut(s)	402, 465
Sau3AI	GATC	3 cut(s)	278, 438, 535
Sau96I	GGNCC	2 cut(s)	8, 567
SchI	GAGTC	2 cut(s)	334, 541
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	3 cut(s)	37, 213, 408
Sfr274I	CTCGAG	1 cut(s)	562
SinI	GGWCC	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	562
SmlI	CTYRAG	2 cut(s)	549, 562
SmoI	CTYRAG	2 cut(s)	549, 562
SsiI	CCGC	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	525, 570
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	305, 563
Tru1I	TTAA	3 cut(s)	54, 579, 588
Tru9I	TTAA	3 cut(s)	54, 579, 588
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	401, 464
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	80, 254, 510
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.