Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Reverse (-)

766931 .. 769801

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTGCAAAGTGTCGGCCGTCAGATCCGAGCGTGTCCAGCACAGGCCACAGCTTGGTGAGACTATACTTGTTCTTGGTTTGTGGCGGACAGTCGTGTGCGGTAGCAATAATGCTGGTCGTTCTAGCTTCGTGGAGTTGGAGGCGAGGGTTCTTGAAACTTCCGACCAGCCCCGAAAGATGTCGCCGGCGCTCGTCGAGGAGGAGCTCGTCGGAGAGGTCCCGTCCACCGAGCAATCCCTCAAGAACGGCCTTCAGAACAAGGAAGAAGATGAGGTCGTGGTGGAGGATGTGAAGGACGACAAGGATGACGACGATGAGGATGATGAGGACGAGGACGAGGACGAGGACGATGACAAGGAAGATGGCGCTCAAGGTGGAAATGAGTCTTCGAAGCAAAGCAGGAGTGAGAAGAAGAGCCGTAAGGCAATGCTGAAGCTGGGAATGAAGCAAGTCACTGGTGTTAGCAGGGTCACCATCAAGAGAACCAAAAACATTCTGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAACTCTGAGACCTATGTCATATTTGGTGAGGCCAAGATTGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGATGGCGAAACCAGAGATTTCTGGAGCTGGTGCTGGAGCGCAAGCAGATGAAGAGGAAGAAGACATTGATGAAACCGGTGTTGAACCTCGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCAAGGAGCAAGGCAGTCAAGGCTCTCAAGACGCACAGTGGGGACATTGTCAGTGCCATCATGGAGCTCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

281

Amino Acids

30.81

Weight (kDa)

4.52

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	136 - 191	7.7e-22	NAC domain
UBA_HYPK	PF19026	240 - 279	2.7e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AciI	CCGC	2 cut(s)	85, 99
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	15
AcuI	CTGAAG	2 cut(s)	236, 452
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgeI	ACCGGT	1 cut(s)	716
AgsI	TTSAA	3 cut(s)	155, 526, 725
AluBI	AGCT	8 cut(s)	52, 126, 205, 436, 585, 592, 668, 832
AluI	AGCT	8 cut(s)	52, 126, 205, 436, 585, 592, 668, 832
Alw21I	GWGCWC	3 cut(s)	207, 587, 834
Alw26I	GTCTC	2 cut(s)	53, 536
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	4 cut(s)	15, 44, 247, 564
ApeKI	GCWGC	2 cut(s)	592, 605
AsiGI	ACCGGT	1 cut(s)	716
AspLEI	GCGC	3 cut(s)	190, 368, 682
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	4 cut(s)	68, 463, 572, 826
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	1 cut(s)	217
BanII	GRGCYC	3 cut(s)	207, 587, 834
BbsI	GAAGAC	3 cut(s)	378, 514, 708
Bbv12I	GWGCWC	3 cut(s)	207, 587, 834
BbvI	GCAGC	2 cut(s)	579, 592
BccI	CCATC	4 cut(s)	356, 482, 637, 830
BceAI	ACGGC	3 cut(s)	2, 262, 402
BcoDI	GTCTC	2 cut(s)	53, 536
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	593
BfoI	RGCGCY	2 cut(s)	191, 369
BisI	GCNGC	2 cut(s)	593, 606
BlsI	GCNGC	2 cut(s)	594, 607
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	612
BoxI	GACNNNNGTC	1 cut(s)	548
BpiI	GAAGAC	3 cut(s)	378, 514, 708
BpmI	CTGGAG	2 cut(s)	684, 696
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	3 cut(s)	224, 354, 776
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	728
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	2 cut(s)	184, 716
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	4 cut(s)	292, 310, 325, 627
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	531, 602
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	2 cut(s)	212, 215
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	579, 592
BseYI	CCCAGC	3 cut(s)	436, 609, 758
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	17, 46, 249, 566
BshTI	ACCGGT	1 cut(s)	716
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	3 cut(s)	207, 587, 834
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	185, 717
BslFI	GGGAC	3 cut(s)	203, 746, 821
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	2 cut(s)	53, 536
BsmFI	GGGAC	3 cut(s)	203, 746, 821
BsnI	GGCC	4 cut(s)	17, 46, 249, 566
Bso31I	GGTCTC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	729
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	207, 587, 834
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	85, 99
BspANI	GGCC	4 cut(s)	17, 46, 249, 566
BspCNI	CTCAG	2 cut(s)	532, 601
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	597
BspPI	GGATC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	407
BspT104I	TTCGAA	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	2 cut(s)	184, 716
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	2 cut(s)	184, 716
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	91, 803
Bst6I	CTCTTC	2 cut(s)	407, 687
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	186, 684
BstDEI	CTNAG	2 cut(s)	540, 588
BstEII	GGTNACC	1 cut(s)	469
BstF5I	GGATG	4 cut(s)	292, 310, 325, 627
BstH2I	RGCGCY	2 cut(s)	191, 369
BstHHI	GCGC	3 cut(s)	190, 368, 682
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	53, 536
BstMBI	GATC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 785
BstPAI	GACNNNNGTC	1 cut(s)	548
BstPI	GGTNACC	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	579, 592
BstV2I	GAAGAC	3 cut(s)	378, 514, 708
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	17, 46, 249, 566
BtsCI	GGATG	4 cut(s)	292, 310, 325, 627
BtsIMutI	CAGTG	3 cut(s)	453, 808, 823
Cac8I	GCNNGC	2 cut(s)	186, 684
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	3 cut(s)	190, 368, 682
Cfr10I	RCCGGY	2 cut(s)	184, 716
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	805
CspAI	ACCGGT	1 cut(s)	716
CviAII	CATG	3 cut(s)	631, 748, 826
DdeI	CTNAG	2 cut(s)	540, 588
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	407, 687
EarI	CTCTTC	2 cut(s)	407, 687
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	3 cut(s)	205, 585, 832
EclXI	CGGCCG	1 cut(s)	15
Eco24I	GRGCYC	3 cut(s)	207, 587, 834
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	217
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	3 cut(s)	205, 585, 832
Eco57I	CTGAAG	2 cut(s)	236, 452
Eco88I	CYCGRG	1 cut(s)	729
Eco91I	GGTNACC	1 cut(s)	469
EcoICRI	GAGCTC	3 cut(s)	205, 585, 832
EcoO109I	RGGNCCY	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	469
EcoT38I	GRGCYC	3 cut(s)	207, 587, 834
FaeI	CATG	3 cut(s)	634, 751, 829
FaiI	YATR	6 cut(s)	65, 549, 554, 632, 749, 827
FaqI	GGGAC	3 cut(s)	203, 746, 821
FatI	CATG	3 cut(s)	630, 747, 825
Fnu4HI	GCNGC	2 cut(s)	593, 606
FokI	GGATG	4 cut(s)	299, 317, 332, 634
FriOI	GRGCYC	3 cut(s)	207, 587, 834
Fsp4HI	GCNGC	2 cut(s)	593, 606
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	3 cut(s)	189, 367, 681
GluI	GCNGC	2 cut(s)	593, 606
GsaI	CCCAGC	3 cut(s)	440, 613, 762
GsuI	CTGGAG	2 cut(s)	684, 696
HaeII	RGCGCY	2 cut(s)	191, 369
HaeIII	GGCC	4 cut(s)	17, 46, 249, 566
HapII	CCGG	2 cut(s)	185, 717
HgaI	GACGC	1 cut(s)	805
HhaI	GCGC	3 cut(s)	190, 368, 682
Hin1II	CATG	3 cut(s)	634, 751, 829
Hin6I	GCGC	3 cut(s)	188, 366, 680
HinP1I	GCGC	3 cut(s)	188, 366, 680
HinfI	GANTC	2 cut(s)	383, 529
HpaII	CCGG	2 cut(s)	185, 717
HphI	GGTGA	4 cut(s)	68, 463, 572, 826
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	6 cut(s)	23, 28, 163, 212, 255, 541
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	3 cut(s)	197, 212, 314
HpyAV	CCTTC	2 cut(s)	260, 286
HpyCH4III	ACNGT	2 cut(s)	91, 803
HpyCH4V	TGCA	2 cut(s)	6, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 785
HpyF3I	CTNAG	2 cut(s)	540, 588
Hsp92II	CATG	3 cut(s)	634, 751, 829
HspAI	GCGC	3 cut(s)	188, 366, 680
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	23
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	5 cut(s)	202, 665, 677, 771, 829
Lsp1109I	GCAGC	2 cut(s)	579, 592
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	451, 469
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	207, 587, 834
MlyI	GAGTC	2 cut(s)	392, 538
MmeI	TCCRAC	3 cut(s)	117, 186, 190
MreI	CGCCGGCG	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	184
MseI	TTAA	1 cut(s)	841
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	2 cut(s)	185, 717
MwoI	GCNNNNNNNGC	2 cut(s)	37, 785
NaeI	GCCGGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	634, 751, 829
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	451, 469
NspV	TTCGAA	1 cut(s)	389
PagI	TCATGA	1 cut(s)	747
PciSI	GCTCTTC	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	186
PflFI	GACNNNGTC	1 cut(s)	812
PflMI	CCANNNNNTGG	1 cut(s)	53
PinAI	ACCGGT	1 cut(s)	716
PkrI	GCNGC	2 cut(s)	594, 607
PleI	GAGTC	2 cut(s)	391, 537
PpsI	GAGTC	2 cut(s)	391, 537
PpuMI	RGGWCCY	1 cut(s)	217
PshAI	GACNNNNGTC	1 cut(s)	548
Psp124BI	GAGCTC	3 cut(s)	207, 587, 834
Psp5II	RGGWCCY	1 cut(s)	217
PspEI	GGTNACC	1 cut(s)	469
PspFI	CCCAGC	3 cut(s)	436, 609, 758
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	597
PsuI	RGATCY	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	812
PvuII	CAGCTG	1 cut(s)	592
SacI	GAGCTC	3 cut(s)	207, 587, 834
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	841
SatI	GCNGC	2 cut(s)	593, 606
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	392, 538
SduI	GDGCHC	3 cut(s)	207, 587, 834
SfaNI	GCATC	1 cut(s)	612
SfcI	CTRYAG	1 cut(s)	593
SfuI	TTCGAA	1 cut(s)	389
SgrAI	CRCCGGYG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	3 cut(s)	239, 369, 791
SmoI	CTYRAG	3 cut(s)	239, 369, 791
SsiI	CCGC	2 cut(s)	85, 99
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	3 cut(s)	207, 587, 834
TaaI	ACNGT	2 cut(s)	91, 803
TaqI	TCGA	3 cut(s)	195, 389, 509
Tru1I	TTAA	1 cut(s)	841
Tru9I	TTAA	1 cut(s)	841
TscAI	CASTG	3 cut(s)	460, 808, 823
TseFI	GTSAC	2 cut(s)	451, 469
TseI	GCWGC	2 cut(s)	592, 605
Tsp45I	GTSAC	2 cut(s)	451, 469
TspDTI	ATGAA	4 cut(s)	458, 493, 705, 726
TspRI	CASTG	3 cut(s)	460, 808, 823
Tth111I	GACNNNGTC	1 cut(s)	812
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	217
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.