Rh1CG434000
NAC Family

Nascent polypeptide-associated complex subunit alpha-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006523
Physical Location & Seq
Forward (+)
68962282 .. 68966205
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG434000.1

Sequence Viewer

Length: 771 bp
ATGTTGAAACAAGAAGCATTTAAGCCGCGCTACTCAGGTTGGGATACTAAGATGGGACCTGATTTGAGAAGTGTCTTTGAGCACGAGGATGATAAGGGTAGAGTTAGATGTTATAATGGTCAAAGCGCATTGGACCTCCTTGAATTAATAAGAAATGCATATCGACATCATGGGCAAAGCACGACGGAACGCCTTGACATCCTGGGCAAAGCACGATGGAACGCCTTGACAAAGAAGTCAAAAAAGATTATTCTGGTTTCTTGCATCGCTTTCATGAGGTGGTATGCAGAGTGTGTTCCAGGTGGAAATGAGTCTTCGAAGCAAAGCAGGAGTGAGAAGAAGAGTCGTAAGGCAATGTTGAAGCTGGGAATGAAGCAAGTCACTGGTGTTAGCAGGGTCACCATCAAGAGAACCAAAAACATTCTGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAACTCTGAGACCTATGTCATATTTGGTGAGGCCAAGATTGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGATGGCGAAACCAGAGATTTCTGGAGCTGGTACTGGAGCCCAAGCAGATGAAGAGGAAGAAGAGATTGATGAAACCGGTGTTGAACCTCGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCAAGGAGCAAGGCAGTCAAGGCTCTCAAGACGCACAGTGGGGACATTGTCAGTGCCATCATGGAGCTCACCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

256

Amino Acids

28.66

Weight (kDa)

9.11

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 112 - 167 6.6e-22 NAC domain
UBA_HYPK PF19026 216 - 255 2.4e-12 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AasI GACNNNNNNGTC 1 cut(s) 235
AccII CGCG 1 cut(s) 28
AciI CCGC 1 cut(s) 26
AfaI GTAC 1 cut(s) 601
AgeI ACCGGT 1 cut(s) 644
AgsI TTSAA 5 cut(s) 7, 143, 361, 454, 653
AjnI CCWGG 2 cut(s) 201, 298
AluBI AGCT 5 cut(s) 364, 513, 520, 596, 760
AluI AGCT 5 cut(s) 364, 513, 520, 596, 760
Alw21I GWGCWC 3 cut(s) 84, 515, 762
Alw26I GTCTC 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 2 cut(s) 520, 533
AseI ATTAAT 1 cut(s) 146
AsiGI ACCGGT 1 cut(s) 644
AspLEI GCGC 2 cut(s) 30, 128
AspS9I GGNCC 2 cut(s) 56, 133
AsuHPI GGTGA 3 cut(s) 391, 500, 754
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 2 cut(s) 56, 133
BanII GRGCYC 3 cut(s) 515, 610, 762
BauI CACGAG 1 cut(s) 83
BbsI GAAGAC 2 cut(s) 306, 442
Bbv12I GWGCWC 3 cut(s) 84, 515, 762
BbvI GCAGC 2 cut(s) 507, 520
BccI CCATC 5 cut(s) 46, 210, 410, 565, 758
BciT130I CCWGG 2 cut(s) 203, 300
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 521
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 3 cut(s) 26, 521, 534
BlsI GCNGC 3 cut(s) 27, 522, 535
Bme1390I CCNGG 2 cut(s) 203, 300
Bme18I GGWCC 2 cut(s) 56, 133
BmeT110I CYCGRG 1 cut(s) 657
BmgT120I GGNCC 2 cut(s) 56, 133
BmiI GGNNCC 2 cut(s) 57, 607
BmrFI CCNGG 2 cut(s) 203, 300
BmsI GCATC 2 cut(s) 273, 540
BoxI GACNNNNGTC 1 cut(s) 476
BpiI GAAGAC 2 cut(s) 306, 442
BpmI CTGGAG 2 cut(s) 612, 624
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 704
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 202, 656
BsaWI WCCGGW 1 cut(s) 644
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 2 cut(s) 388, 607
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 203, 300
BseDI CCNNGG 2 cut(s) 202, 656
BseGI GGATG 3 cut(s) 94, 198, 555
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 48, 459, 530
BseNI ACTGG 2 cut(s) 388, 607
BseXI GCAGC 2 cut(s) 507, 520
BseYI CCCAGC 3 cut(s) 364, 537, 686
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 494
BshTI ACCGGT 1 cut(s) 644
BsiHKAI GWGCWC 3 cut(s) 84, 515, 762
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 1 cut(s) 645
BslFI GGGAC 3 cut(s) 69, 674, 749
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 3 cut(s) 69, 674, 749
BsnI GGCC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 657
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 4 cut(s) 84, 515, 610, 762
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 3 cut(s) 47, 460, 529
BspFNI CGCG 1 cut(s) 28
BspHI TCATGA 2 cut(s) 273, 675
BspLI GGNNCC 2 cut(s) 57, 607
BspMAI CTGCAG 1 cut(s) 525
BspT104I TTCGAA 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 2 cut(s) 388, 607
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 2 cut(s) 202, 656
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 203, 300
Bst4CI ACNGT 1 cut(s) 731
Bst6I CTCTTC 3 cut(s) 335, 615, 624
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 4 cut(s) 34, 48, 468, 516
BstEII GGTNACC 1 cut(s) 397
BstF5I GGATG 3 cut(s) 94, 198, 555
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 2 cut(s) 30, 128
BstMAI GTCTC 1 cut(s) 464
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstNI CCWGG 2 cut(s) 203, 300
BstPAI GACNNNNGTC 1 cut(s) 476
BstPI GGTNACC 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 201, 298
BstSFI CTRYAG 1 cut(s) 521
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 507, 520
BstV2I GAAGAC 2 cut(s) 306, 442
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 3 cut(s) 94, 198, 555
BtsIMutI CAGTG 3 cut(s) 381, 736, 751
CciI TCATGA 2 cut(s) 273, 675
CfoI GCGC 2 cut(s) 30, 128
Cfr10I RCCGGY 1 cut(s) 644
Cfr13I GGNCC 2 cut(s) 56, 133
CseI GACGC 1 cut(s) 733
Csp6I GTAC 1 cut(s) 600
CspAI ACCGGT 1 cut(s) 644
CviAII CATG 5 cut(s) 170, 274, 559, 676, 754
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 4 cut(s) 34, 48, 468, 516
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 335, 615, 624
EarI CTCTTC 3 cut(s) 335, 615, 624
Ecl136II GAGCTC 2 cut(s) 513, 760
Eco24I GRGCYC 3 cut(s) 515, 610, 762
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 56, 133
Eco53kI GAGCTC 2 cut(s) 513, 760
Eco88I CYCGRG 1 cut(s) 657
Eco91I GGTNACC 1 cut(s) 397
EcoICRI GAGCTC 2 cut(s) 513, 760
EcoO109I RGGNCCY 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 201, 298
EcoT22I ATGCAT 1 cut(s) 160
EcoT38I GRGCYC 3 cut(s) 515, 610, 762
FaeI CATG 5 cut(s) 173, 277, 562, 679, 757
FaqI GGGAC 3 cut(s) 69, 674, 749
FatI CATG 5 cut(s) 169, 273, 558, 675, 753
Fnu4HI GCNGC 3 cut(s) 26, 521, 534
FokI GGATG 3 cut(s) 101, 185, 562
FriOI GRGCYC 3 cut(s) 515, 610, 762
Fsp4HI GCNGC 3 cut(s) 26, 521, 534
GlaI GCGC 2 cut(s) 29, 127
GluI GCNGC 3 cut(s) 26, 521, 534
GsaI CCCAGC 3 cut(s) 368, 541, 690
GsuI CTGGAG 2 cut(s) 612, 624
HaeIII GGCC 1 cut(s) 494
HapII CCGG 1 cut(s) 645
HgaI GACGC 1 cut(s) 733
HhaI GCGC 2 cut(s) 30, 128
Hin1II CATG 5 cut(s) 173, 277, 562, 679, 757
Hin6I GCGC 2 cut(s) 28, 126
HinP1I GCGC 2 cut(s) 28, 126
HinfI GANTC 3 cut(s) 311, 343, 457
HpaII CCGG 1 cut(s) 645
HphI GGTGA 3 cut(s) 391, 500, 754
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 9 cut(s) 274, 406, 436, 454, 547, 591, 659, 676, 721
Hpy99I CGWCG 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 731
HpyCH4V TGCA 4 cut(s) 158, 264, 287, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 4 cut(s) 34, 48, 468, 516
Hsp92II CATG 5 cut(s) 173, 277, 562, 679, 757
HspAI GCGC 2 cut(s) 28, 126
LmnI GCTCC 4 cut(s) 593, 605, 699, 757
Lsp1109I GCAGC 2 cut(s) 507, 520
LweI GCATC 2 cut(s) 273, 540
MaeIII GTNAC 2 cut(s) 379, 397
MboII GAAGA 7 cut(s) 306, 349, 352, 442, 632, 638, 641
MhlI GDGCHC 4 cut(s) 84, 515, 610, 762
MluCI AATT 1 cut(s) 143
MlyI GAGTC 3 cut(s) 320, 352, 466
MnlI CCTC 7 cut(s) 79, 146, 270, 484, 496, 616, 666
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 3 cut(s) 21, 146, 769
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 520
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 2 cut(s) 203, 300
MvaI CCWGG 2 cut(s) 203, 300
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 713
NlaIII CATG 5 cut(s) 173, 277, 562, 679, 757
NlaIV GGNNCC 2 cut(s) 57, 607
NmuCI GTSAC 2 cut(s) 379, 397
NsiI ATGCAT 1 cut(s) 160
NspV TTCGAA 1 cut(s) 317
PagI TCATGA 2 cut(s) 273, 675
PflFI GACNNNGTC 1 cut(s) 740
PinAI ACCGGT 1 cut(s) 644
PkrI GCNGC 3 cut(s) 27, 522, 535
PleI GAGTC 3 cut(s) 319, 351, 465
PpsI GAGTC 3 cut(s) 319, 351, 465
PpuMI RGGWCCY 1 cut(s) 56
PshAI GACNNNNGTC 1 cut(s) 476
PshBI ATTAAT 1 cut(s) 146
PsiI TTATAA 1 cut(s) 114
Psp124BI GAGCTC 2 cut(s) 515, 762
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 201, 298
PspEI GGTNACC 1 cut(s) 397
PspFI CCCAGC 3 cut(s) 364, 537, 686
PspGI CCWGG 2 cut(s) 201, 298
PspN4I GGNNCC 2 cut(s) 57, 607
PspPI GGNCC 2 cut(s) 56, 133
PspPPI RGGWCCY 1 cut(s) 56
PstI CTGCAG 1 cut(s) 525
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 1 cut(s) 520
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 1 cut(s) 87
SacI GAGCTC 2 cut(s) 515, 762
SaqAI TTAA 3 cut(s) 21, 146, 769
SatI GCNGC 3 cut(s) 26, 521, 534
Sau96I GGNCC 2 cut(s) 56, 133
SchI GAGTC 3 cut(s) 320, 352, 466
ScrFI CCNGG 2 cut(s) 203, 300
SduI GDGCHC 4 cut(s) 84, 515, 610, 762
SfaNI GCATC 2 cut(s) 273, 540
SfcI CTRYAG 1 cut(s) 521
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 2 cut(s) 56, 133
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 26
SstI GAGCTC 2 cut(s) 515, 762
StyD4I CCNGG 2 cut(s) 201, 298
TaaI ACNGT 1 cut(s) 731
TaqI TCGA 3 cut(s) 163, 317, 437
TasI AATT 1 cut(s) 143
TauI GCSGC 1 cut(s) 28
Tru1I TTAA 3 cut(s) 21, 146, 769
Tru9I TTAA 3 cut(s) 21, 146, 769
TscAI CASTG 3 cut(s) 388, 736, 751
TseFI GTSAC 2 cut(s) 379, 397
TseI GCWGC 2 cut(s) 520, 533
Tsp45I GTSAC 2 cut(s) 379, 397
TspDTI ATGAA 5 cut(s) 262, 386, 421, 633, 654
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 3 cut(s) 388, 736, 751
Tth111I GACNNNGTC 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 56, 133
VspI ATTAAT 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.