Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006523

Physical Location & Seq

Genomic Coordinates Forward (+)

31873798 .. 31876115

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1229300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTGGGCGAATTGTACCAAATACGGCGGGCCCAATTGTAACAAGAAACCCTTTGCCCTCGCGAATCATCATCAATCATATATCATCCATCTCCGTCTCGCTTTCTCTATACCCACTGCTGCTCCTGCCGAACGGCCAAGACTGTTCCCCTTTATCCGTTTCAGAATTCCAGAGCTCCGCCGAGGAACACAAAAGATGTCACCGGCTCCACTTGTTCAGCAGGACGCCGCCGCCGCCGACGAGGTCTCCTCCGTCGAGCAGCTTCTCAAGAGCTCTAATCCGAACAAGGAGGAAGACGAAGTGGTGGTCGAGGACGTGAAGGACGACAATGACGAGGACGAGGACGATGAGGACGATGACGAGGACGACGATGATAAGGAAGACGGCGCTCAAGGTGGAAGTGGGGCTTCGAAGCAGAGTAGAAGTGAGAAGAAGAGTCGAAAGGCTATGTTGAAGCTTGGGATGAAGCCTGTTACCGGCGTTAGCAGGGTTACCATCAAAAGGACCAAAAACATACTATTTTTCATCTCGAAACCTGATGTGTTCAAGAGTCCAAACTCTGACACCTATGTCCTATTTGGCGAGGCCAAGATCGAGGATTTGAGCTCCCAGCTTCAGACACAGGCTGCTCAGCAGTTCAGGATGCCAGACATGAGTTCTGTGACGGGGAAACCAGAGATTTCGGCAGCAGCTGCTGGAGCTCAGGATGAAGAGGAGGAAGAGGTTGATGAAACCGGGGTGGAGCCTAGGGACATTGATTTGGTCATGACACAGGCTGGGGTATCGAGAAGCAAGGCCGTCAAGGCGCTCAAGACTCACAGCGGGGACATTGTCAGCGCTATCATGGAGCTCACCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

287

Amino Acids

31.46

Weight (kDa)

4.83

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	143 - 198	2.9e-21	NAC domain
UBA_HYPK	PF19026	246 - 285	2.8e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33040 AT3G49470 AT3G49470 AT4G10480 AT4G10480
fragaria_vesca	FvH4_7g33010
malus_domestica	MD01G1229300.v1.1 MD01G1229400.v1.1 MD07G1301200.v1.1 MD07G1301300.v1.1
prunus_persica	Prupe.2G319900_v2.0.a1
pyrus_communis	pycom01g23740 pycom01g23750 pycom07g27370 pycom07g27380
rosa_chinensis	RchiOBHm_Chr1g0383021
rosa_laevigata	RLG00000026138
rosa_multiflora	Rmu_co8044230.1_g000001 Rmu_sc0000634.1_g000004
rosa_roxburghii	Rroxscaffold_4G00277670
rosa_rugosa	Rorug01G0437700
rosa_samantha	Rh1AG463400 Rh1BG420500 Rh1CG434000 Rh1DG453100
rosa_wichuraiana	Rw1G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	27, 178, 228, 231, 234, 822
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	16
AfeI	AGCGCT	1 cut(s)	838
AfiI	CCNNNNNNNGG	2 cut(s)	476, 501
AgsI	TTSAA	2 cut(s)	454, 547
AjiI	CACGTC	1 cut(s)	316
AluBI	AGCT	9 cut(s)	175, 262, 273, 457, 606, 613, 692, 701, 850
AluI	AGCT	9 cut(s)	175, 262, 273, 457, 606, 613, 692, 701, 850
Alw21I	GWGCWC	5 cut(s)	177, 275, 608, 703, 852
Alw26I	GTCTC	2 cut(s)	101, 250
AlwNI	CAGNNNCTG	2 cut(s)	692, 695
Aor51HI	AGCGCT	1 cut(s)	838
AoxI	GGCC	4 cut(s)	29, 134, 585, 795
ApaI	GGGCCC	1 cut(s)	33
ApeKI	GCWGC	6 cut(s)	119, 259, 626, 686, 689, 692
ApoI	RAATTY	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AspA2I	CCTAGG	1 cut(s)	746
AspLEI	GCGC	3 cut(s)	389, 808, 839
AspS9I	GGNCC	3 cut(s)	29, 30, 504
AsuC2I	CCSGG	1 cut(s)	736
AsuHPI	GGTGA	2 cut(s)	192, 844
AsuII	TTCGAA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	504
AvrII	CCTAGG	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	33
BanII	GRGCYC	6 cut(s)	33, 177, 275, 608, 703, 852
BbsI	GAAGAC	2 cut(s)	300, 387
Bbv12I	GWGCWC	5 cut(s)	177, 275, 608, 703, 852
BbvI	GCAGC	6 cut(s)	106, 271, 613, 679, 698, 701
BccI	CCATC	2 cut(s)	96, 503
BceAI	ACGGC	4 cut(s)	40, 149, 400, 782
BcnI	CCSGG	1 cut(s)	736
BcoDI	GTCTC	2 cut(s)	101, 250
BfaI	CTAG	1 cut(s)	747
BfoI	RGCGCY	3 cut(s)	390, 809, 840
BglI	GCCNNNNNGGC	1 cut(s)	803
BisI	GCNGC	9 cut(s)	120, 228, 231, 234, 260, 627, 687, 690, 693
BlnI	CCTAGG	1 cut(s)	746
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	9 cut(s)	121, 229, 232, 235, 261, 628, 688, 691, 694
Bme1390I	CCNGG	1 cut(s)	736
Bme18I	GGWCC	1 cut(s)	504
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	3 cut(s)	29, 30, 504
BmiI	GGNNCC	3 cut(s)	31, 207, 744
BmrFI	CCNGG	1 cut(s)	736
BmsI	GCATC	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	300, 387
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	702
Bpu1102I	GCTNAGC	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	3 cut(s)	251, 375, 794
BpuMI	CCSGG	1 cut(s)	736
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	181, 735, 746
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 501
Bse118I	RCCGGY	2 cut(s)	202, 476
BseDI	CCNNGG	3 cut(s)	181, 735, 746
BseGI	GGATG	4 cut(s)	84, 468, 648, 712
BseLI	CCNNNNNNNGG	2 cut(s)	476, 501
BseMII	CTCAG	2 cut(s)	644, 716
BseRI	GAGGAG	2 cut(s)	238, 728
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	6 cut(s)	106, 271, 613, 679, 698, 701
BseYI	CCCAGC	2 cut(s)	609, 776
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	31, 136, 587, 797
BsiHKAI	GWGCWC	5 cut(s)	177, 275, 608, 703, 852
BsiSI	CCGG	3 cut(s)	203, 477, 735
BslFI	GGGAC	2 cut(s)	764, 839
BslI	CCNNNNNNNGG	2 cut(s)	476, 501
BsmAI	GTCTC	2 cut(s)	101, 250
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	764, 839
BsnI	GGCC	4 cut(s)	31, 136, 587, 797
Bso31I	GGTCTC	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	410
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	6 cut(s)	33, 177, 275, 608, 703, 852
Bsp143I	GATC	1 cut(s)	591
Bsp1720I	GCTNAGC	1 cut(s)	630
Bsp68I	TCGCGA	1 cut(s)	62
BspACI	CCGC	6 cut(s)	27, 178, 228, 231, 234, 822
BspANI	GGCC	4 cut(s)	31, 136, 587, 797
BspCNI	CTCAG	2 cut(s)	643, 715
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	3 cut(s)	31, 207, 744
BspT104I	TTCGAA	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	250
BsrFI	RCCGGY	2 cut(s)	202, 476
BssAI	RCCGGY	2 cut(s)	202, 476
BssECI	CCNNGG	3 cut(s)	181, 735, 746
BssMI	GATC	1 cut(s)	591
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	746
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	3 cut(s)	428, 705, 714
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	630, 702
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	4 cut(s)	84, 468, 648, 712
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	3 cut(s)	390, 809, 840
BstHHI	GCGC	3 cut(s)	389, 808, 839
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	2 cut(s)	101, 250
BstMBI	GATC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 233, 692, 698, 803
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	734
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	6 cut(s)	106, 271, 613, 679, 698, 701
BstV2I	GAAGAC	2 cut(s)	300, 387
BsuRI	GGCC	4 cut(s)	31, 136, 587, 797
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	84, 468, 648, 712
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
BtuMI	TCGCGA	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	29
CaiI	CAGNNNCTG	2 cut(s)	692, 695
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	3 cut(s)	389, 808, 839
Cfr10I	RCCGGY	2 cut(s)	202, 476
Cfr13I	GGNCC	3 cut(s)	29, 30, 504
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	3 cut(s)	652, 766, 844
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	630, 702
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	428, 705, 714
EarI	CTCTTC	3 cut(s)	428, 705, 714
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	5 cut(s)	175, 273, 606, 701, 850
Eco130I	CCWWGG	1 cut(s)	746
Eco24I	GRGCYC	6 cut(s)	33, 177, 275, 608, 703, 852
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	504
Eco47III	AGCGCT	1 cut(s)	838
Eco53kI	GAGCTC	5 cut(s)	175, 273, 606, 701, 850
Eco57I	CTGAAG	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	490
EcoICRI	GAGCTC	5 cut(s)	175, 273, 606, 701, 850
EcoO65I	GGTNACC	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	746
EcoT38I	GRGCYC	6 cut(s)	33, 177, 275, 608, 703, 852
ErhI	CCWWGG	1 cut(s)	746
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	3 cut(s)	655, 769, 847
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 391, 423
FaqI	GGGAC	2 cut(s)	764, 839
FatI	CATG	3 cut(s)	651, 765, 843
FauI	CCCGC	2 cut(s)	20, 815
Fnu4HI	GCNGC	9 cut(s)	120, 228, 231, 234, 260, 627, 687, 690, 693
FokI	GGATG	4 cut(s)	71, 475, 655, 719
FriOI	GRGCYC	6 cut(s)	33, 177, 275, 608, 703, 852
Fsp4HI	GCNGC	9 cut(s)	120, 228, 231, 234, 260, 627, 687, 690, 693
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	3 cut(s)	388, 807, 838
GluI	GCNGC	9 cut(s)	120, 228, 231, 234, 260, 627, 687, 690, 693
GsaI	CCCAGC	2 cut(s)	613, 780
GsuI	CTGGAG	1 cut(s)	717
HaeII	RGCGCY	3 cut(s)	390, 809, 840
HaeIII	GGCC	4 cut(s)	31, 136, 587, 797
HapII	CCGG	3 cut(s)	203, 477, 735
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	3 cut(s)	389, 808, 839
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	655, 769, 847
Hin6I	GCGC	3 cut(s)	387, 806, 837
HinP1I	GCGC	3 cut(s)	387, 806, 837
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	4 cut(s)	64, 436, 550, 814
HpaII	CCGG	3 cut(s)	203, 477, 735
HphI	GGTGA	2 cut(s)	192, 844
Hpy188I	TCNGA	4 cut(s)	164, 282, 562, 618
Hpy99I	CGWCG	3 cut(s)	242, 257, 371
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 233, 692, 698, 803
HpyF3I	CTNAG	2 cut(s)	630, 702
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	655, 769, 847
HspAI	GCGC	3 cut(s)	387, 806, 837
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	7 cut(s)	127, 180, 211, 611, 698, 742, 847
Lsp1109I	GCAGC	6 cut(s)	106, 271, 613, 679, 698, 701
LweI	GCATC	1 cut(s)	633
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	5 cut(s)	38, 198, 472, 490, 661
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	6 cut(s)	305, 392, 442, 445, 722, 731
MfeI	CAATTG	1 cut(s)	34
MhlI	GDGCHC	6 cut(s)	33, 177, 275, 608, 703, 852
MluCI	AATT	3 cut(s)	10, 34, 165
MlyI	GAGTC	3 cut(s)	445, 559, 808
MspA1I	CMGCKG	2 cut(s)	692, 822
MspI	CCGG	3 cut(s)	203, 477, 735
MspR9I	CCNGG	1 cut(s)	736
MunI	CAATTG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	125, 233, 692, 698, 803
NciI	CCSGG	1 cut(s)	736
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	655, 769, 847
NlaIV	GGNNCC	3 cut(s)	31, 207, 744
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	2 cut(s)	198, 661
NruI	TCGCGA	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	410
PagI	TCATGA	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	4 cut(s)	321, 330, 351, 366
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	2 cut(s)	242, 830
PkrI	GCNGC	9 cut(s)	121, 229, 232, 235, 261, 628, 688, 691, 694
PleI	GAGTC	3 cut(s)	444, 558, 808
PpsI	GAGTC	3 cut(s)	444, 558, 808
Psp124BI	GAGCTC	5 cut(s)	177, 275, 608, 703, 852
PspEI	GGTNACC	1 cut(s)	490
PspFI	CCCAGC	2 cut(s)	609, 776
PspN4I	GGNNCC	3 cut(s)	31, 207, 744
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	3 cut(s)	29, 30, 504
PstNI	CAGNNNCTG	2 cut(s)	692, 695
PsyI	GACNNNGTC	2 cut(s)	242, 830
PvuII	CAGCTG	1 cut(s)	692
RruI	TCGCGA	1 cut(s)	62
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SacI	GAGCTC	5 cut(s)	177, 275, 608, 703, 852
SatI	GCNGC	9 cut(s)	120, 228, 231, 234, 260, 627, 687, 690, 693
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	3 cut(s)	29, 30, 504
SchI	GAGTC	3 cut(s)	445, 559, 808
ScrFI	CCNGG	1 cut(s)	736
SduI	GDGCHC	6 cut(s)	33, 177, 275, 608, 703, 852
SfaNI	GCATC	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	1 cut(s)	504
SmlI	CTYRAG	3 cut(s)	266, 390, 809
SmoI	CTYRAG	3 cut(s)	266, 390, 809
Sse9I	AATT	3 cut(s)	10, 34, 165
SsiI	CCGC	6 cut(s)	27, 178, 228, 231, 234, 822
SspMI	CTAG	1 cut(s)	747
SstI	GAGCTC	5 cut(s)	177, 275, 608, 703, 852
StyD4I	CCNGG	1 cut(s)	734
StyI	CCWWGG	1 cut(s)	746
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	7 cut(s)	255, 309, 410, 439, 530, 594, 785
TasI	AATT	3 cut(s)	10, 34, 165
TauI	GCSGC	3 cut(s)	230, 233, 236
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	198, 661
TseI	GCWGC	6 cut(s)	119, 259, 626, 686, 689, 692
Tsp45I	GTSAC	2 cut(s)	198, 661
TspDTI	ATGAA	4 cut(s)	479, 514, 723, 744
TspGWI	ACGGA	3 cut(s)	83, 146, 241
TspRI	CASTG	1 cut(s)	121
Tth111I	GACNNNGTC	2 cut(s)	242, 830
VpaK11BI	GGWCC	1 cut(s)	504
XapI	RAATTY	1 cut(s)	165
XmaJI	CCTAGG	1 cut(s)	746
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.