AT1G44110

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
16774765 .. 16777352
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44110.1

Sequence Viewer

Length: 1383 bp
ATGTCGAACATTCTTCAGAATCGGCGATCTTCGTTTTCCTCTTCGACGAAATCTTCATTAGCGAAGCGTCAAGCACCATCTTCATCGGAGAATTCTGTTAAACTTATGCCGGCGATGACGAAGAAACGAGCACCGTTAAGTAACATTACCAATCAAAAAATCGCCTCACGATTACAAAATTCTGATTCGGTACATTGTTCAAACAAGTCAGCGAAATTGAAGATAGCACCAAGTGTTTGCGTTAATGCCAGTTTCTCTAGCAATCTGCAACAAAGCATAGTTCCTCACAAAGTTGCTTCTTCACCTAGCAAATCTGATGATGGCTCAGTATCAATGGACGAGACTAGGTCTTCAAGTGATTCCTACAAGAGTCCTCAAGTTGAGTATATCGAAAACGACGACGTTTCGGCTGTTGTTTCGATTGAGAGGAAAGCTTTGAGTAATCTGTTCATAACGCCGAATTCAGAAACAATTGATAATTATTGTAGTAGAGATGTGTTATCTGATATGAAGAAAATGGATAAGAATCAGATTGTTAACATTGATAGTAACAATGGTGATCCTCAGCTTTGTGCTACGTTTGCTTGTGACATTTATAAGCATCTTCGTGCTTCTGAGGCTAAGAAGCGACCTGATGTTGATTACATGGAGAGAGTTCAGAAAGATGTGAATTCGAGTATGCGTGGAATCTTAGTTGATTGGCTTATTGAGGTGTCTGAAGAGTATAGGCTTGTACCGGAGACGTTGTATTTGACTGTGAACTATATAGATAGGTATTTATCTGGGAATGTGATTAGTAGACAGAAACTTCAGTTGCTTGGTGTGGCTTGTATGATGATAGCAGCGAAATATGAAGAGATATGTGCTCCACAAGTTGAGGAGTTTTGTTACATTACTGATAATACATATCTCAAAGATGAAGTTCTTGATATGGAATCTGATGTTCTGAATTACTTGAAGTTTGAAATGACTGCACCAACTACGAAATGTTTTCTAAGACGCTTTGTTCGAGCTGCTCATGGTGTTCATGAAGCTCCATTGATGCAGCTAGAATGTATGGCTAACTACATTGCGGAATTATCGCTACTAGAGTACACTATGCTCTCTCATTCTCCTTCACTAGTAGCTGCTTCCGCCATTTTCTTGGCTAAGTACATTCTAGACCCAACAAGACGACCATGGAACTCGACGTTGCAACACTATACGCAATATAAAGCGATGGAGTTGAGAGGATGTGTGAAGGATCTTCAACGATTGTGTAGTACTGCTCACGGCTCTACACTACCTGCTGTTAGAGAGAAGTATAGTCAACACAAATACAAGTTTGTGGCGAAGAAGTTTTGTCCATCCGTAATCCCACAAGAGTTCTTCAACAACAGCTAA

Protein Analysis

460

Amino Acids

51.9

Weight (kDa)

8.42

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 197 - 324 4e-50 Cyclin, N-terminal domain
Cyclin_C PF02984 326 - 445 7e-37 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 1294
AccI GTMKAC 1 cut(s) 799
AciI CCGC 2 cut(s) 1073, 1134
AclWI GGATC 2 cut(s) 554, 1251
AcsI RAATTY 4 cut(s) 91, 178, 460, 670
AcuI CTGAAG 2 cut(s) 738, 794
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 5 cut(s) 192, 735, 1094, 1154, 1264
AgsI TTSAA 7 cut(s) 201, 220, 354, 958, 965, 1250, 1372
AhlI ACTAGT 1 cut(s) 1120
AluBI AGCT 7 cut(s) 434, 568, 1013, 1034, 1048, 1127, 1380
AluI AGCT 7 cut(s) 434, 568, 1013, 1034, 1048, 1127, 1380
Alw21I GWGCWC 2 cut(s) 133, 868
Alw26I GTCTC 2 cut(s) 335, 734
AlwI GGATC 2 cut(s) 554, 1251
ApeKI GCWGC 4 cut(s) 842, 1013, 1045, 1127
ApoI RAATTY 4 cut(s) 91, 178, 460, 670
ArsI GACNNNNNNTTYG 4 cut(s) 733, 765, 990, 1022
AsuHPI GGTGA 2 cut(s) 294, 569
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 133, 868
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 4 cut(s) 854, 1000, 1057, 1114
BccI CCATC 4 cut(s) 85, 314, 1213, 1354
BceAI ACGGC 1 cut(s) 1288
BcoDI GTCTC 2 cut(s) 335, 734
BcuI ACTAGT 1 cut(s) 1120
BfaI CTAG 7 cut(s) 258, 306, 345, 1049, 1088, 1121, 1160
BfuAI ACCTGC 1 cut(s) 1294
BisI GCNGC 4 cut(s) 843, 1014, 1046, 1128
BlsI GCNGC 4 cut(s) 844, 1015, 1047, 1129
BmcAI AGTACT 1 cut(s) 1264
BmsI GCATC 2 cut(s) 610, 1032
BpiI GAAGAC 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 1178
BsaWI WCCGGW 1 cut(s) 736
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 1068
Bse8I GATNNNNATC 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 1178
BseGI GGATG 2 cut(s) 1238, 1346
BseJI GATNNNNATC 1 cut(s) 525
BseMI GCAATG 1 cut(s) 1068
BseMII CTCAG 3 cut(s) 339, 578, 606
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 893
BseXI GCAGC 4 cut(s) 854, 1000, 1057, 1114
BsgI GTGCAG 1 cut(s) 957
BsiHKAI GWGCWC 2 cut(s) 133, 868
BsiSI CCGG 2 cut(s) 110, 737
BsmAI GTCTC 2 cut(s) 335, 734
BsmBI CGTCTC 1 cut(s) 734
Bsp1286I GDGCHC 2 cut(s) 133, 868
Bsp143I GATC 3 cut(s) 26, 559, 1243
Bsp19I CCATGG 1 cut(s) 1178
BspACI CCGC 2 cut(s) 1073, 1134
BspCNI CTCAG 3 cut(s) 338, 577, 607
BspHI TCATGA 1 cut(s) 1027
BspMI ACCTGC 1 cut(s) 1294
BspPI GGATC 2 cut(s) 554, 1251
BsrDI GCAATG 1 cut(s) 1068
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 1178
BssMI GATC 3 cut(s) 26, 559, 1243
BssT1I CCWWGG 1 cut(s) 1178
Bst4CI ACNGT 2 cut(s) 135, 757
Bst6I CTCTTC 3 cut(s) 46, 714, 849
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 7 cut(s) 325, 564, 615, 621, 691, 995, 1149
BstDSI CCRYGG 1 cut(s) 1178
BstF5I GGATG 2 cut(s) 1238, 1346
BstKTI GATC 3 cut(s) 29, 562, 1246
BstMAI GTCTC 2 cut(s) 335, 734
BstMBI GATC 3 cut(s) 26, 559, 1243
BstMWI GCNNNNNNNGC 3 cut(s) 581, 617, 1133
BstV1I GCAGC 4 cut(s) 854, 1000, 1057, 1114
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 1243
BstXI CCANNNNNNTGG 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1243
BtgI CCRYGG 1 cut(s) 1178
BtgZI GCGATG 2 cut(s) 128, 1232
BtsCI GGATG 2 cut(s) 1238, 1346
BveI ACCTGC 1 cut(s) 1294
Cac8I GCNNGC 1 cut(s) 111
CciI TCATGA 1 cut(s) 1027
Cfr10I RCCGGY 1 cut(s) 109
CseI GACGC 2 cut(s) 56, 1008
Csp6I GTAC 5 cut(s) 191, 734, 1093, 1153, 1263
CviAII CATG 4 cut(s) 646, 1019, 1028, 1179
CviQI GTAC 5 cut(s) 191, 734, 1093, 1153, 1263
DdeI CTNAG 7 cut(s) 325, 564, 615, 621, 691, 995, 1149
DpnI GATC 3 cut(s) 28, 561, 1245
DpnII GATC 3 cut(s) 26, 559, 1243
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 3 cut(s) 46, 714, 849
EarI CTCTTC 3 cut(s) 46, 714, 849
EciI GGCGGA 1 cut(s) 1123
Eco130I CCWWGG 1 cut(s) 1178
Eco57I CTGAAG 2 cut(s) 738, 794
EcoRI GAATTC 3 cut(s) 91, 460, 670
EcoT14I CCWWGG 1 cut(s) 1178
ErhI CCWWGG 1 cut(s) 1178
Esp3I CGTCTC 1 cut(s) 734
FaeI CATG 4 cut(s) 649, 1022, 1031, 1182
FatI CATG 4 cut(s) 645, 1018, 1027, 1178
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 843, 1014, 1046, 1128
FokI GGATG 2 cut(s) 1245, 1333
Fsp4HI GCNGC 4 cut(s) 843, 1014, 1046, 1128
FspBI CTAG 7 cut(s) 258, 306, 345, 1049, 1088, 1121, 1160
GluI GCNGC 4 cut(s) 843, 1014, 1046, 1128
HapII CCGG 2 cut(s) 110, 737
HgaI GACGC 2 cut(s) 56, 1008
Hin1II CATG 4 cut(s) 649, 1022, 1031, 1182
HincII GTYRAC 2 cut(s) 538, 1310
HindII GTYRAC 2 cut(s) 538, 1310
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 7 cut(s) 19, 185, 359, 370, 526, 687, 935
HpaI GTTAAC 1 cut(s) 538
HpaII CCGG 2 cut(s) 110, 737
HphI GGTGA 2 cut(s) 294, 569
Hpy166II GTNNAC 5 cut(s) 538, 760, 800, 1095, 1310
Hpy188III TCNNGA 4 cut(s) 168, 926, 1028, 1160
Hpy8I GTNNAC 5 cut(s) 538, 760, 800, 1095, 1310
Hpy99I CGWCG 4 cut(s) 49, 401, 404, 1192
HpyAV CCTTC 2 cut(s) 1125, 1234
HpyCH4III ACNGT 2 cut(s) 135, 757
HpyCH4IV ACGT 4 cut(s) 402, 578, 743, 1190
HpyCH4V TGCA 4 cut(s) 268, 974, 1045, 1195
HpyF10VI GCNNNNNNNGC 3 cut(s) 581, 617, 1133
HpyF3I CTNAG 7 cut(s) 325, 564, 615, 621, 691, 995, 1149
HpySE526I ACGT 4 cut(s) 402, 578, 743, 1190
Hsp92II CATG 4 cut(s) 649, 1022, 1031, 1182
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
KspAI GTTAAC 1 cut(s) 538
Kzo9I GATC 3 cut(s) 26, 559, 1243
LmnI GCTCC 2 cut(s) 871, 1039
LpnPI CCDG 6 cut(s) 123, 262, 645, 750, 768, 1299
Lsp1109I GCAGC 4 cut(s) 854, 1000, 1057, 1114
LweI GCATC 2 cut(s) 610, 1032
MaeI CTAG 7 cut(s) 258, 306, 345, 1049, 1088, 1121, 1160
MaeII ACGT 4 cut(s) 402, 578, 743, 1190
MaeIII GTNAC 4 cut(s) 140, 548, 587, 887
MalI GATC 3 cut(s) 28, 561, 1245
MboI GATC 3 cut(s) 26, 559, 1243
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 2 cut(s) 133, 868
MluCI AATT 9 cut(s) 91, 178, 215, 460, 471, 478, 670, 949, 1076
MlyI GAGTC 1 cut(s) 379
MroNI GCCGGC 1 cut(s) 109
MseI TTAA 4 cut(s) 99, 137, 243, 537
MslI CAYNNNNRTG 1 cut(s) 606
MspI CCGG 2 cut(s) 110, 737
MunI CAATTG 1 cut(s) 471
MwoI GCNNNNNNNGC 3 cut(s) 581, 617, 1133
NaeI GCCGGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 1178
NdeII GATC 3 cut(s) 26, 559, 1243
NgoMIV GCCGGC 1 cut(s) 109
NlaIII CATG 4 cut(s) 649, 1022, 1031, 1182
NmuCI GTSAC 1 cut(s) 587
PagI TCATGA 1 cut(s) 1027
PcsI WCGNNNNNNNCGW 2 cut(s) 396, 1006
PdiI GCCGGC 1 cut(s) 111
PfeI GAWTC 6 cut(s) 19, 185, 359, 526, 687, 935
PflFI GACNNNGTC 1 cut(s) 346
PkrI GCNGC 4 cut(s) 844, 1015, 1047, 1129
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
PsiI TTATAA 1 cut(s) 597
PsuI RGATCY 1 cut(s) 1243
PsyI GACNNNGTC 1 cut(s) 346
RsaI GTAC 5 cut(s) 192, 735, 1094, 1154, 1264
RsaNI GTAC 5 cut(s) 191, 734, 1093, 1153, 1263
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 4 cut(s) 99, 137, 243, 537
SatI GCNGC 4 cut(s) 843, 1014, 1046, 1128
Sau3AI GATC 3 cut(s) 26, 559, 1243
ScaI AGTACT 1 cut(s) 1264
SchI GAGTC 1 cut(s) 379
SduI GDGCHC 2 cut(s) 133, 868
SfaNI GCATC 2 cut(s) 610, 1032
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
SpeI ACTAGT 1 cut(s) 1120
Sse9I AATT 9 cut(s) 91, 178, 215, 460, 471, 478, 670, 949, 1076
SsiI CCGC 2 cut(s) 1073, 1134
SspMI CTAG 7 cut(s) 258, 306, 345, 1049, 1088, 1121, 1160
StyI CCWWGG 1 cut(s) 1178
TaaI ACNGT 2 cut(s) 135, 757
TaiI ACGT 4 cut(s) 405, 581, 746, 1193
TaqI TCGA 7 cut(s) 5, 44, 390, 419, 674, 1009, 1187
TasI AATT 9 cut(s) 91, 178, 215, 460, 471, 478, 670, 949, 1076
TatI WGTACW 3 cut(s) 1092, 1152, 1262
TfiI GAWTC 6 cut(s) 19, 185, 359, 526, 687, 935
Tru1I TTAA 4 cut(s) 99, 137, 243, 537
Tru9I TTAA 4 cut(s) 99, 137, 243, 537
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 4 cut(s) 842, 1013, 1045, 1127
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 8 cut(s) 45, 72, 439, 524, 867, 933, 1016, 1044
TspGWI ACGGA 1 cut(s) 1339
Tth111I GACNNNGTC 1 cut(s) 346
XapI RAATTY 4 cut(s) 91, 178, 460, 670
XbaI TCTAGA 1 cut(s) 1159
XmiI GTMKAC 1 cut(s) 799
XspI CTAG 7 cut(s) 258, 306, 345, 1049, 1088, 1121, 1160
ZrmI AGTACT 1 cut(s) 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.