Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

7739186 .. 7739887

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCGTGCATTACTAGTCGATTGGCTTGTGGAGGTAGCCGAAGGCTACAGCTTTGTACCTGCAGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGATTCCTATCAATAGAGAACGGTTAAAGTTACTTGGTGTTGCATGCTTGATGCTTGCATCAAAATATGAATATATGTGTACACCCTCGGTTGAAGAGTTCTGTGACCTTACTAATAACATTTATTTGGTGGAAGAGGTCTTGGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCGTAACAACTAAATGTTTCTTAAGCCGATTTGTTCGAGCTGCTCAAGGGGCCAATGAGCTTCCATCATTGCATTTGGAGTGCTTAGCGAACTACCTTGCAGAACTATCTCTTCTCGATTACAGCATGCTTTGTTATGCCTCATCACTTATAGCTGCTTCTGCAATTTTCCTGGCCAATTACATAATGCTACCTTCAAAGAGGCCATGGAATGCTACCTTGCAGCACTACACGCTTTACCAGCCTTCGGATTTGCGCAACTGCGTCAAGGATCTCCATCGCCTATGTTGCAATAACCAGAGTTCTACTTTACCTGCTATCAGAGAGAAATATAGTCAACATGAGTACAAGTGTGTTGCCGAGAAGCGGTGTCCAGCTACAATCCCTGAAGAGTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

233

Amino Acids

26.63

Weight (kDa)

5.31

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	1 - 99	2.8e-31	Cyclin, N-terminal domain
Cyclin_C	PF02984	101 - 221	1.1e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	2 cut(s)	67, 619
AciI	CCGC	1 cut(s)	664
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	471
AfaI	GTAC	5 cut(s)	57, 190, 287, 644, 692
AfiI	CCNNNNNNNGG	2 cut(s)	544, 663
AflII	CTTAAG	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	203, 283, 495
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	5 cut(s)	51, 338, 358, 452, 674
AluI	AGCT	5 cut(s)	51, 338, 358, 452, 674
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	576
AoxI	GGCC	3 cut(s)	348, 471, 500
ApeKI	GCWGC	3 cut(s)	338, 452, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	348
BalI	TGGCCA	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	325, 439, 532
BccI	CCATC	2 cut(s)	370, 582
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	59
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	46, 60
BfrI	CTTAAG	1 cut(s)	319
BfuAI	ACCTGC	2 cut(s)	67, 619
BisI	GCNGC	3 cut(s)	339, 453, 521
BlpI	GCTNAGC	1 cut(s)	382
BlsI	GCNGC	3 cut(s)	340, 454, 522
Bme1390I	CCNGG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	150, 176
Bpu1102I	GCTNAGC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	97
BsaBI	GATNNNNATC	3 cut(s)	99, 116, 573
BsaJI	CCNNGG	2 cut(s)	195, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	544, 663
Bse3DI	GCAATG	1 cut(s)	365
Bse8I	GATNNNNATC	3 cut(s)	99, 116, 573
BseBI	CCWGG	1 cut(s)	470
BseCI	ATCGAT	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	195, 503
BseJI	GATNNNNATC	3 cut(s)	99, 116, 573
BseLI	CCNNNNNNNGG	2 cut(s)	544, 663
BseMI	GCAATG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	325, 439, 532
BshFI	GGCC	3 cut(s)	350, 473, 502
BshVI	ATCGAT	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	544, 663
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	3 cut(s)	350, 473, 502
Bsp1407I	TGTACA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	94, 568
Bsp1720I	GCTNAGC	1 cut(s)	382
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	1 cut(s)	664
BspANI	GGCC	3 cut(s)	350, 473, 502
BspDI	ATCGAT	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	2 cut(s)	67, 619
BspPI	GGATC	1 cut(s)	576
BspTI	CTTAAG	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	195, 503
BssMI	GATC	2 cut(s)	94, 568
BssT1I	CCWWGG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	4 cut(s)	198, 237, 414, 681
BstAFI	CTTAAG	1 cut(s)	319
BstAUI	TGTACA	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	6, 154, 165, 425
BstDEI	CTNAG	1 cut(s)	382
BstDSI	CCRYGG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	2 cut(s)	97, 571
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	94, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	347, 458, 529, 538, 585
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	2 cut(s)	156, 427
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	2 cut(s)	46, 60
BstV1I	GCAGC	3 cut(s)	325, 439, 532
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	350, 473, 502
BsuTUI	ATCGAT	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	560
BveI	ACCTGC	2 cut(s)	67, 619
Cac8I	GCNNGC	4 cut(s)	6, 154, 165, 425
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	348
ClaI	ATCGAT	1 cut(s)	97
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	5 cut(s)	56, 189, 286, 643, 691
CviAII	CATG	4 cut(s)	153, 424, 504, 638
CviQI	GTAC	5 cut(s)	56, 189, 286, 643, 691
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	2 cut(s)	96, 570
DpnII	GATC	2 cut(s)	94, 568
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	4 cut(s)	198, 237, 414, 681
EarI	CTCTTC	4 cut(s)	198, 237, 414, 681
Eco130I	CCWWGG	1 cut(s)	503
Eco32I	GATATC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	4 cut(s)	156, 427, 507, 641
FatI	CATG	4 cut(s)	152, 423, 503, 637
Fnu4HI	GCNGC	3 cut(s)	339, 453, 521
Fsp4HI	GCNGC	3 cut(s)	339, 453, 521
FspBI	CTAG	1 cut(s)	14
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	3 cut(s)	339, 453, 521
HaeIII	GGCC	3 cut(s)	350, 473, 502
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	4 cut(s)	156, 427, 507, 641
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	2 cut(s)	112, 260
Hpy166II	GTNNAC	4 cut(s)	85, 189, 191, 635
Hpy188I	TCNGA	2 cut(s)	547, 620
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	4 cut(s)	85, 189, 191, 635
HpyAV	CCTTC	3 cut(s)	35, 501, 552
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	9 cut(s)	8, 62, 152, 167, 370, 398, 461, 520, 588
HpyF10VI	GCNNNNNNNGC	5 cut(s)	347, 458, 529, 538, 585
HpyF3I	CTNAG	1 cut(s)	382
Hsp92II	CATG	4 cut(s)	156, 427, 507, 641
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	94, 568
LpnPI	CCDG	8 cut(s)	72, 455, 482, 551, 608, 624, 684, 696
Lsp1109I	GCAGC	3 cut(s)	325, 439, 532
LweI	GCATC	2 cut(s)	150, 176
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	4 cut(s)	138, 212, 275, 301
MalI	GATC	2 cut(s)	96, 570
MboI	GATC	2 cut(s)	94, 568
MboII	GAAGA	5 cut(s)	215, 254, 255, 401, 698
MflI	RGATCY	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	2 cut(s)	462, 475
MluNI	TGGCCA	1 cut(s)	473
MnlI	CCTC	5 cut(s)	25, 205, 238, 448, 492
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	2 cut(s)	134, 320
Msp20I	TGGCCA	1 cut(s)	473
MspCI	CTTAAG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	5 cut(s)	347, 458, 529, 538, 585
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	2 cut(s)	94, 568
NlaIII	CATG	4 cut(s)	156, 427, 507, 641
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	1 cut(s)	212
NsbI	TGCGCA	1 cut(s)	554
NspI	RCATGY	2 cut(s)	156, 427
PaeI	GCATGC	2 cut(s)	156, 427
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	112, 260
PkrI	GCNGC	3 cut(s)	340, 454, 522
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	5 cut(s)	57, 190, 287, 644, 692
RsaNI	GTAC	5 cut(s)	56, 189, 286, 643, 691
SaqAI	TTAA	2 cut(s)	134, 320
SatI	GCNGC	3 cut(s)	339, 453, 521
Sau3AI	GATC	2 cut(s)	94, 568
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	470
SfaNI	GCATC	2 cut(s)	150, 176
SfcI	CTRYAG	2 cut(s)	46, 60
SmlI	CTYRAG	2 cut(s)	319, 342
SmoI	CTYRAG	2 cut(s)	319, 342
SpeI	ACTAGT	1 cut(s)	13
SphI	GCATGC	2 cut(s)	156, 427
Sse9I	AATT	2 cut(s)	462, 475
SsiI	CCGC	1 cut(s)	664
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	18, 97, 334, 414
TasI	AATT	2 cut(s)	462, 475
TatI	WGTACW	2 cut(s)	188, 642
TfiI	GAWTC	2 cut(s)	112, 260
Tru1I	TTAA	2 cut(s)	134, 320
Tru9I	TTAA	2 cut(s)	134, 320
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	3 cut(s)	338, 452, 520
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	319
XceI	RCATGY	2 cut(s)	156, 427
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.