Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Forward (+)

83745915 .. 83746895

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTTGCAGCAGTACTTGTCTAGCAAGAGCACTACTACTGGTTCCGAAGACAAGTACTCTGCAGCGATTTTGCATGAAACAACAGCCATTGTCTGCAATAGAGAACTACTTGTGGACTTGGAAGCAGATGGTGGTATTGCTGGTATTGATAACAGCTTCATGGATCAGCAGCTTTGTATAACCTTTGCTTGTGACATTTACAACCACTTGCGAGCATCTGAGGTCAAGAAAAGGCCTTCCACAGATTATATGGACAAAATTCAGAAAGACATTAATCCAAGCATGCGTGCATTACTAGTCGATTGGCTTGTGGAGGTAGCTGAAGGCTACAGCTTTGTACCTGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGATTCCTATCAATAGAGAACGGTTAAAGTTACTGGGTGTTGCCTGCTTGATGCTTGCATCAAAATATGAATATATGGATACACCCTCGGTTGAAGAGTTCTGTGACCTTACTAATAACATTTATTTGGTGGAAGAGGTCTTGGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCGTAACAACTAAATGTTTCTTAAGCCGATTTGTTCGAGCTGCTCAAGGGACCAATGAGCTTCCATCATTGCATTTGGAGTGCTTAGCGAACTACCTTGCAGAACTATCTCTTCTCGATTACAGCATGCTTTGTTATGCCTCATCACTTATAGCTGCTTCTGCAATTTTCTTGGCCAATTACATAATGCTACCTTCAAAGAGGCCATGGAATGCTACCTTGCAGCACTACACGCTTTACCAGCCTTCGGATTTGCGCAATTGCGTCAAGGATCTCCATCGCCTATGTTGCAATAACCAGGGTTCTACTTTACCTGCTATCAGAGAGAAATATGGTCAACATGAGTACAAGTGTGTTGCCGAGAAGCAGTGCCCAGCTACAATCCCTGCAGAGTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

326

Amino Acids

36.91

Weight (kDa)

5.02

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	65 - 192	1.5e-42	Cyclin, N-terminal domain
Cyclin_C	PF02984	194 - 316	4.5e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	833
Acc36I	ACCTGC	1 cut(s)	898
AclWI	GGATC	2 cut(s)	171, 855
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	6 cut(s)	14, 56, 339, 566, 923, 971
AfiI	CCNNNNNNNGG	1 cut(s)	823
AflII	CTTAAG	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	482, 562, 774
AhlI	ACTAGT	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	8 cut(s)	156, 172, 320, 333, 617, 637, 731, 953
AluI	AGCT	8 cut(s)	156, 172, 320, 333, 617, 637, 731, 953
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	171, 855
AoxI	GGCC	3 cut(s)	233, 750, 779
ApeKI	GCWGC	6 cut(s)	7, 62, 169, 617, 731, 799
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	627
BaeGI	GKGCMC	1 cut(s)	950
BalI	TGGCCA	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	6 cut(s)	19, 74, 181, 604, 718, 811
BccI	CCATC	3 cut(s)	122, 649, 861
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	875
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	2 cut(s)	21, 296
BfmI	CTRYAG	3 cut(s)	60, 328, 963
BfrI	CTTAAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	898
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	6 cut(s)	8, 63, 170, 618, 732, 800
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	6 cut(s)	9, 64, 171, 619, 733, 801
BmcAI	AGTACT	2 cut(s)	14, 56
Bme1390I	CCNGG	1 cut(s)	875
Bme18I	GGWCC	1 cut(s)	627
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	43, 628
BmrFI	CCNGG	1 cut(s)	875
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	224, 429, 455
BmuI	ACTGGG	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	661
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	376
BsaBI	GATNNNNATC	3 cut(s)	378, 395, 852
BsaJI	CCNNGG	3 cut(s)	474, 782, 874
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse1I	ACTGG	2 cut(s)	43, 426
Bse3DI	GCAATG	1 cut(s)	644
Bse8I	GATNNNNATC	3 cut(s)	378, 395, 852
BseBI	CCWGG	1 cut(s)	875
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	474, 782, 874
BseJI	GATNNNNATC	3 cut(s)	378, 395, 852
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	2 cut(s)	210, 333
BseNI	ACTGG	2 cut(s)	43, 426
BseSI	GKGCMC	1 cut(s)	950
BseXI	GCAGC	6 cut(s)	19, 74, 181, 604, 718, 811
BseYI	CCCAGC	1 cut(s)	949
BshFI	GGCC	3 cut(s)	235, 752, 781
BshVI	ATCGAT	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	3 cut(s)	235, 752, 781
Bsp1286I	GDGCHC	2 cut(s)	32, 950
Bsp143I	GATC	3 cut(s)	163, 373, 847
Bsp1720I	GCTNAGC	1 cut(s)	661
Bsp19I	CCATGG	1 cut(s)	782
BspANI	GGCC	3 cut(s)	235, 752, 781
BspCNI	CTCAG	2 cut(s)	211, 334
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	43, 628
BspMAI	CTGCAG	2 cut(s)	64, 967
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	2 cut(s)	171, 855
BspTI	CTTAAG	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	43, 426
BssECI	CCNNGG	3 cut(s)	474, 782, 874
BssMI	GATC	3 cut(s)	163, 373, 847
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	1 cut(s)	875
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	3 cut(s)	477, 516, 693
BstAFI	CTTAAG	1 cut(s)	598
BstC8I	GCNNGC	6 cut(s)	213, 284, 288, 433, 444, 704
BstDEI	CTNAG	3 cut(s)	219, 342, 661
BstDSI	CCRYGG	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	3 cut(s)	166, 376, 850
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	3 cut(s)	163, 373, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	737, 808, 817, 864
BstNI	CCWGG	1 cut(s)	875
BstNSI	RCATGY	2 cut(s)	286, 706
BstSCI	CCNGG	1 cut(s)	873
BstSFI	CTRYAG	3 cut(s)	60, 328, 963
BstSLI	GKGCMC	1 cut(s)	950
BstV1I	GCAGC	6 cut(s)	19, 74, 181, 604, 718, 811
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
Bsu15I	ATCGAT	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	3 cut(s)	235, 752, 781
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	839
BtsI	GCAGTG	1 cut(s)	950
BtsIMutI	CAGTG	1 cut(s)	950
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	6 cut(s)	213, 284, 288, 433, 444, 704
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	376
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	6 cut(s)	13, 55, 338, 565, 922, 970
CviAII	CATG	6 cut(s)	74, 160, 283, 703, 783, 917
CviQI	GTAC	6 cut(s)	13, 55, 338, 565, 922, 970
DdeI	CTNAG	3 cut(s)	219, 342, 661
DpnI	GATC	3 cut(s)	165, 375, 849
DpnII	GATC	3 cut(s)	163, 373, 847
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	3 cut(s)	477, 516, 693
EarI	CTCTTC	3 cut(s)	477, 516, 693
Eco130I	CCWWGG	1 cut(s)	782
Eco147I	AGGCCT	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	873
EcoRV	GATATC	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	6 cut(s)	73, 159, 282, 702, 782, 916
Fnu4HI	GCNGC	6 cut(s)	8, 63, 170, 618, 732, 800
Fsp4HI	GCNGC	6 cut(s)	8, 63, 170, 618, 732, 800
FspBI	CTAG	2 cut(s)	21, 296
FspI	TGCGCA	1 cut(s)	833
GlaI	GCGC	1 cut(s)	833
GluI	GCNGC	6 cut(s)	8, 63, 170, 618, 732, 800
GsaI	CCCAGC	1 cut(s)	953
HaeIII	GGCC	3 cut(s)	235, 752, 781
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	834
Hin1II	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	914
HindII	GTYRAC	1 cut(s)	914
HinfI	GANTC	2 cut(s)	391, 539
Hpy166II	GTNNAC	3 cut(s)	115, 364, 914
Hpy188I	TCNGA	5 cut(s)	46, 220, 264, 826, 899
Hpy188III	TCNNGA	2 cut(s)	226, 692
Hpy8I	GTNNAC	3 cut(s)	115, 364, 914
HpyAV	CCTTC	4 cut(s)	246, 317, 780, 831
HpyCH4III	ACNGT	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	737, 808, 817, 864
HpyF3I	CTNAG	3 cut(s)	219, 342, 661
Hsp92II	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
HspAI	GCGC	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	163, 373, 847
Lsp1109I	GCAGC	6 cut(s)	19, 74, 181, 604, 718, 811
LweI	GCATC	3 cut(s)	224, 429, 455
MaeI	CTAG	2 cut(s)	21, 296
MaeIII	GTNAC	5 cut(s)	191, 417, 491, 554, 580
MalI	GATC	3 cut(s)	165, 375, 849
MboI	GATC	3 cut(s)	163, 373, 847
MboII	GAAGA	5 cut(s)	59, 494, 533, 534, 680
MfeI	CAATTG	1 cut(s)	835
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	2 cut(s)	32, 950
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	4 cut(s)	258, 741, 754, 835
MluNI	TGGCCA	1 cut(s)	752
MnlI	CCTC	6 cut(s)	214, 307, 484, 517, 727, 771
Mox20I	TGGCCA	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	273, 413, 599
Msp20I	TGGCCA	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	598
MspR9I	CCNGG	1 cut(s)	875
MunI	CAATTG	1 cut(s)	835
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	4 cut(s)	737, 808, 817, 864
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	163, 373, 847
NlaIII	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
NlaIV	GGNNCC	2 cut(s)	43, 628
NmeAIII	GCCGAG	1 cut(s)	961
NmuCI	GTSAC	2 cut(s)	191, 491
NsbI	TGCGCA	1 cut(s)	833
NspI	RCATGY	2 cut(s)	286, 706
PaeI	GCATGC	2 cut(s)	286, 706
PceI	AGGCCT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	391, 539
PkrI	GCNGC	6 cut(s)	9, 64, 171, 619, 733, 801
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	873
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	2 cut(s)	43, 628
PspPI	GGNCC	1 cut(s)	627
PstI	CTGCAG	2 cut(s)	64, 967
PsuI	RGATCY	1 cut(s)	847
RsaI	GTAC	6 cut(s)	14, 56, 339, 566, 923, 971
RsaNI	GTAC	6 cut(s)	13, 55, 338, 565, 922, 970
SaqAI	TTAA	3 cut(s)	273, 413, 599
SatI	GCNGC	6 cut(s)	8, 63, 170, 618, 732, 800
Sau3AI	GATC	3 cut(s)	163, 373, 847
Sau96I	GGNCC	1 cut(s)	627
ScaI	AGTACT	2 cut(s)	14, 56
ScrFI	CCNGG	1 cut(s)	875
SduI	GDGCHC	2 cut(s)	32, 950
SfaNI	GCATC	3 cut(s)	224, 429, 455
SfcI	CTRYAG	3 cut(s)	60, 328, 963
SinI	GGWCC	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	598, 621
SmoI	CTYRAG	2 cut(s)	598, 621
SpeI	ACTAGT	1 cut(s)	295
SphI	GCATGC	2 cut(s)	286, 706
Sse9I	AATT	4 cut(s)	258, 741, 754, 835
SseBI	AGGCCT	1 cut(s)	235
SspMI	CTAG	2 cut(s)	21, 296
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	873
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	300, 376, 613, 693
TasI	AATT	4 cut(s)	258, 741, 754, 835
TatI	WGTACW	3 cut(s)	12, 54, 921
TfiI	GAWTC	2 cut(s)	391, 539
Tru1I	TTAA	3 cut(s)	273, 413, 599
Tru9I	TTAA	3 cut(s)	273, 413, 599
TscAI	CASTG	1 cut(s)	950
TseFI	GTSAC	2 cut(s)	191, 491
TseI	GCWGC	6 cut(s)	7, 62, 169, 617, 731, 799
Tsp45I	GTSAC	2 cut(s)	191, 491
TspDTI	ATGAA	3 cut(s)	90, 148, 471
TspRI	CASTG	1 cut(s)	950
Vha464I	CTTAAG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	627
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	2 cut(s)	286, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	2 cut(s)	21, 296
ZrmI	AGTACT	2 cut(s)	14, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.