Rmu_sc0019394.1_g000001

Cyclin_C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019394.1
OG0001536
Physical Location & Seq
Reverse (-)
723 .. 5230
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019394.1_g000001.1.cds

Sequence Viewer

Length: 1542 bp
atgtcgacccggaaccgccgtgcactgccgtcttcatcttcgtcctcggcgaataggctcccaattccgcagaatccgaacaagaaggccatggcggcgaaaccccaagtggcgaagaagcgaaccgctctgtgtgacgtcaccaaccaaagaaatgggtctcaaattggttcacggagctctgcttcttcgtcgaagcctatggtgccatgtacaacaaaagttgtgaagacgaagaaggaaacatctactttcattagtaatcatggcctcacagggaatgtttttccggcatcactgagttcaaagtcaagcatcttggttcctttcagtgacacgtcaatttcaggaactgttgagtctattgaaacaattgccaccaaccattctcccaacagtagaggtactgtttttcctgcttccagtagcataatacacgctctcagaagcaaagatgtctctccaagcagatctgttagtggttcagtttctttggatgagagcatgtctacttctaattctttgaagagtccagaatttgaatatattgacaatgaggacatttcagaagttaaatctattgagaagaagacgataaacagcctctacattacagacatcccacaaatagaaggaattattcggaagagagatatatttacagatacagtgacaatagaagaagttcttgatatagataacaatcttacggacccacagttctgtgcaaccattgcttctgacatatacaagtacttgcttgaatctgaggtaaatagaaggccctcagtggactttatggaaacagtgcagaaagacattaattctggaatgcgggctattctgattgattggctagtagaggttgctgaagagttcaggctggtaccggagacactatttctcactgtcaactatgtagatcgttatctttctggcaatgtgatgaaaaggcaacgattgcaactgctcggtgttgcttgcatgatgattgcagctaaatatgaggagattcatgttcctgaggtggaagagttctgttacattacagacaatacatacttcaaagatgaggttttgcaaatggaatctgatgtgctgaatcatttgaagtttgaaatgacagctccaacagctatgtgctttttgaggcgattttgttctgttgctgaaatgaccagtgaggttccaccactgctgttccagtacttggcccactatattggagagttatctcttctagaatacagcatgcttggctatgccccatcgctgatagctgcttctgctactttcttggccaaatatatactttccccttcacagaagccttggaattctacattaagacactacacaacctaccaagcctctgatttgtgtgattgtgtgaaagtgctgcatcacctgtgttgtaatggcagtggttctaacttagctgcagttagggagaagtactgtcaacacaagtacaagtttgtggccaagaagtactgtcctcagtcaatacctccagagttcttccacgatctgagcaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

513

Amino Acids

57.29

Weight (kDa)

6.61

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 886
AccB1I GGYRCC 2 cut(s) 205, 886
AccB7I CCANNNNNTGG 1 cut(s) 1210
AccBSI CCGCTC 1 cut(s) 128
AccI GTMKAC 2 cut(s) 5, 509
AciI CCGC 5 cut(s) 16, 68, 95, 126, 835
AcoI YGGCCR 2 cut(s) 1299, 1482
AcsI RAATTY 2 cut(s) 536, 1336
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 8 cut(s) 214, 406, 755, 888, 1208, 1457, 1472, 1493
AfiI CCNNNNNNNGG 1 cut(s) 1210
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 8 cut(s) 306, 368, 526, 542, 764, 1066, 1111, 1118
AjiI CACGTC 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 704, 736
AluBI AGCT 6 cut(s) 180, 998, 1127, 1136, 1280, 1439
AluI AGCT 6 cut(s) 180, 998, 1127, 1136, 1280, 1439
Alw21I GWGCWC 2 cut(s) 25, 182
Alw26I GTCTC 3 cut(s) 165, 463, 887
Alw44I GTGCAC 1 cut(s) 21
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 6 cut(s) 87, 268, 782, 1212, 1299, 1482
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 4 cut(s) 995, 1280, 1399, 1439
ApoI RAATTY 2 cut(s) 536, 1336
AseI ATTAAT 1 cut(s) 822
Asp700I GAANNNNTTC 1 cut(s) 684
Asp718I GGTACC 1 cut(s) 886
AspS9I GGNCC 3 cut(s) 712, 783, 1213
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 133, 1397
AvaII GGWCC 1 cut(s) 712
AxyI CCTNAGG 1 cut(s) 1023
BaeGI GKGCMC 1 cut(s) 25
BalI TGGCCA 2 cut(s) 1301, 1484
BanI GGYRCC 2 cut(s) 205, 886
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 3 cut(s) 24, 236, 596
Bbv12I GWGCWC 2 cut(s) 25, 182
BbvI GCAGC 4 cut(s) 1007, 1267, 1386, 1426
BccI CCATC 1 cut(s) 1276
BceAI ACGGC 2 cut(s) 3, 13
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 3 cut(s) 165, 463, 887
BfaI CTAG 3 cut(s) 857, 1241, 1540
BfmI CTRYAG 1 cut(s) 1440
BglI GCCNNNNNGGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 470
BisI GCNGC 5 cut(s) 96, 996, 1281, 1400, 1440
BlsI GCNGC 5 cut(s) 97, 997, 1282, 1401, 1441
BmcAI AGTACT 4 cut(s) 755, 1208, 1457, 1493
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 712
BmgBI CACGTC 1 cut(s) 339
BmgT120I GGNCC 3 cut(s) 712, 783, 1213
BmiI GGNNCC 7 cut(s) 14, 59, 207, 324, 714, 888, 1188
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 3 cut(s) 302, 324, 1411
BpiI GAAGAC 3 cut(s) 24, 236, 596
BpmI CTGGAG 1 cut(s) 1497
BpuMI CCSGG 1 cut(s) 10
BsaBI GATNNNNATC 2 cut(s) 702, 927
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 45, 90, 1331
BsaWI WCCGGW 1 cut(s) 889
Bsc4I CCNNNNNNNGG 1 cut(s) 1210
Bse1I ACTGG 3 cut(s) 423, 1179, 1204
Bse21I CCTNAGG 1 cut(s) 1023
Bse3DI GCAATG 2 cut(s) 732, 946
Bse8I GATNNNNATC 2 cut(s) 702, 927
BseDI CCNNGG 3 cut(s) 45, 90, 1331
BseGI GGATG 2 cut(s) 502, 618
BseJI GATNNNNATC 2 cut(s) 702, 927
BseLI CCNNNNNNNGG 1 cut(s) 1210
BseMI GCAATG 2 cut(s) 732, 946
BseMII CTCAG 7 cut(s) 290, 457, 759, 801, 1014, 1514, 1523
BseNI ACTGG 3 cut(s) 423, 1179, 1204
BseRI GAGGAG 1 cut(s) 1022
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 4 cut(s) 1007, 1267, 1386, 1426
BsgI GTGCAG 1 cut(s) 830
BshFI GGCC 6 cut(s) 89, 270, 784, 1214, 1301, 1484
BshNI GGYRCC 2 cut(s) 205, 886
BsiHKAI GWGCWC 2 cut(s) 25, 182
BsiSI CCGG 3 cut(s) 10, 290, 890
BslI CCNNNNNNNGG 1 cut(s) 1210
BsmAI GTCTC 3 cut(s) 165, 463, 887
BsmI GAATGC 1 cut(s) 837
BsnI GGCC 6 cut(s) 89, 270, 784, 1214, 1301, 1484
Bso31I GGTCTC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 25, 182
Bsp1407I TGTACA 1 cut(s) 212
Bsp143I GATC 3 cut(s) 470, 922, 1528
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 5 cut(s) 16, 68, 95, 126, 835
BspANI GGCC 6 cut(s) 89, 270, 784, 1214, 1301, 1484
BspCNI CTCAG 7 cut(s) 291, 456, 760, 800, 1015, 1513, 1524
BspLI GGNNCC 7 cut(s) 14, 59, 207, 324, 714, 888, 1188
BspMAI CTGCAG 1 cut(s) 1444
BspT107I GGYRCC 2 cut(s) 205, 886
BspTNI GGTCTC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 2 cut(s) 732, 946
BsrGI TGTACA 1 cut(s) 212
BsrI ACTGG 3 cut(s) 423, 1179, 1204
BssECI CCNNGG 3 cut(s) 45, 90, 1331
BssMI GATC 3 cut(s) 470, 922, 1528
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 90, 1331
Bst4CI ACNGT 9 cut(s) 355, 398, 409, 670, 720, 808, 910, 1460, 1496
Bst6I CTCTTC 5 cut(s) 521, 641, 867, 1026, 1242
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 2 cut(s) 734, 961
BstAUI TGTACA 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 837, 982, 1253
BstDEI CTNAG 8 cut(s) 299, 443, 768, 787, 1023, 1435, 1500, 1532
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 502, 618
BstKTI GATC 3 cut(s) 473, 925, 1531
BstMAI GTCTC 3 cut(s) 165, 463, 887
BstMBI GATC 3 cut(s) 470, 922, 1528
BstMWI GCNNNNNNNGC 7 cut(s) 95, 205, 734, 961, 1133, 1257, 1286
BstNSI RCATGY 2 cut(s) 508, 1255
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 1440
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 4 cut(s) 1007, 1267, 1386, 1426
BstV2I GAAGAC 3 cut(s) 24, 236, 596
BstX2I RGATCY 1 cut(s) 470
BstXI CCANNNNNNTGG 2 cut(s) 155, 1223
BstYI RGATCY 1 cut(s) 470
Bsu36I CCTNAGG 1 cut(s) 1023
BsuRI GGCC 6 cut(s) 89, 270, 784, 1214, 1301, 1484
BtgI CCRYGG 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 1254
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 502, 618
BtsI GCAGTG 3 cut(s) 23, 1193, 1429
Cac8I GCNNGC 3 cut(s) 837, 982, 1253
CaiI CAGNNNCTG 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 712, 783, 1213
Csp6I GTAC 8 cut(s) 213, 405, 754, 887, 1207, 1456, 1471, 1492
CviAII CATG 7 cut(s) 91, 210, 266, 505, 985, 1016, 1252
CviQI GTAC 8 cut(s) 213, 405, 754, 887, 1207, 1456, 1471, 1492
DdeI CTNAG 8 cut(s) 299, 443, 768, 787, 1023, 1435, 1500, 1532
DpnI GATC 3 cut(s) 472, 924, 1530
DpnII GATC 3 cut(s) 470, 922, 1528
EaeI YGGCCR 2 cut(s) 1299, 1482
Eam1104I CTCTTC 5 cut(s) 521, 641, 867, 1026, 1242
EarI CTCTTC 5 cut(s) 521, 641, 867, 1026, 1242
Ecl136II GAGCTC 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 90, 1331
Eco24I GRGCYC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 712
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 891
Eco81I CCTNAGG 1 cut(s) 1023
EcoICRI GAGCTC 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 783
EcoRI GAATTC 1 cut(s) 1336
EcoT14I CCWWGG 2 cut(s) 90, 1331
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 90, 1331
FaeI CATG 7 cut(s) 94, 213, 269, 508, 988, 1019, 1255
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FatI CATG 7 cut(s) 90, 209, 265, 504, 984, 1015, 1251
FauI CCCGC 1 cut(s) 828
FblI GTMKAC 2 cut(s) 5, 509
Fnu4HI GCNGC 5 cut(s) 96, 996, 1281, 1400, 1440
FokI GGATG 2 cut(s) 509, 605
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 5 cut(s) 96, 996, 1281, 1400, 1440
FspBI CTAG 3 cut(s) 857, 1241, 1540
GluI GCNGC 5 cut(s) 96, 996, 1281, 1400, 1440
GsuI CTGGAG 1 cut(s) 1497
HaeIII GGCC 6 cut(s) 89, 270, 784, 1214, 1301, 1484
HapII CCGG 3 cut(s) 10, 290, 890
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 7 cut(s) 94, 213, 269, 508, 988, 1019, 1255
HincII GTYRAC 3 cut(s) 6, 913, 1463
HindII GTYRAC 3 cut(s) 6, 913, 1463
HinfI GANTC 7 cut(s) 73, 359, 529, 764, 1012, 1088, 1102
HpaII CCGG 3 cut(s) 10, 290, 890
HphI GGTGA 2 cut(s) 133, 1397
Hpy166II GTNNAC 7 cut(s) 6, 23, 173, 510, 793, 913, 1463
Hpy188III TCNNGA 7 cut(s) 348, 533, 689, 828, 1022, 1241, 1514
Hpy8I GTNNAC 7 cut(s) 6, 23, 173, 510, 793, 913, 1463
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 5 cut(s) 79, 232, 626, 774, 1329
HpyCH4III ACNGT 9 cut(s) 355, 398, 409, 670, 720, 808, 910, 1460, 1496
HpyCH4IV ACGT 2 cut(s) 138, 338
HpyCH4V TGCA 9 cut(s) 23, 728, 811, 964, 984, 995, 1081, 1402, 1442
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 205, 734, 961, 1133, 1257, 1286
HpyF3I CTNAG 8 cut(s) 299, 443, 768, 787, 1023, 1435, 1500, 1532
HpySE526I ACGT 2 cut(s) 138, 338
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 7 cut(s) 94, 213, 269, 508, 988, 1019, 1255
KpnI GGTACC 1 cut(s) 890
Kzo9I GATC 3 cut(s) 470, 922, 1528
LmnI GCTCC 3 cut(s) 63, 177, 1132
Lsp1109I GCAGC 4 cut(s) 1007, 1267, 1386, 1426
LweI GCATC 3 cut(s) 302, 324, 1411
MaeI CTAG 3 cut(s) 857, 1241, 1540
MaeII ACGT 2 cut(s) 138, 338
MaeIII GTNAC 5 cut(s) 134, 139, 332, 670, 1040
MalI GATC 3 cut(s) 472, 924, 1530
MbiI CCGCTC 1 cut(s) 128
MboI GATC 3 cut(s) 470, 922, 1528
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 2 cut(s) 25, 182
MlsI TGGCCA 2 cut(s) 1301, 1484
MluCI AATT 9 cut(s) 63, 165, 342, 372, 517, 536, 636, 823, 1336
MluNI TGGCCA 2 cut(s) 1301, 1484
MlyI GAGTC 2 cut(s) 368, 538
MmeI TCCRAC 1 cut(s) 1154
Mox20I TGGCCA 2 cut(s) 1301, 1484
MroXI GAANNNNTTC 1 cut(s) 684
MscI TGGCCA 2 cut(s) 1301, 1484
MseI TTAA 3 cut(s) 573, 822, 1346
Msp20I TGGCCA 2 cut(s) 1301, 1484
MspI CCGG 3 cut(s) 10, 290, 890
MspR9I CCNGG 1 cut(s) 10
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 837
MwoI GCNNNNNNNGC 7 cut(s) 95, 205, 734, 961, 1133, 1257, 1286
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 90
NdeII GATC 3 cut(s) 470, 922, 1528
NlaIII CATG 7 cut(s) 94, 213, 269, 508, 988, 1019, 1255
NlaIV GGNNCC 7 cut(s) 14, 59, 207, 324, 714, 888, 1188
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 4 cut(s) 134, 139, 332, 670
NspI RCATGY 2 cut(s) 508, 1255
PaeI GCATGC 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 837
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 5 cut(s) 73, 764, 1012, 1088, 1102
PflMI CCANNNNNTGG 1 cut(s) 1210
PkrI GCNGC 5 cut(s) 97, 997, 1282, 1401, 1441
PleI GAGTC 2 cut(s) 367, 537
PpsI GAGTC 2 cut(s) 367, 537
PshBI ATTAAT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 182
PspN4I GGNNCC 7 cut(s) 14, 59, 207, 324, 714, 888, 1188
PspPI GGNCC 3 cut(s) 712, 783, 1213
PstI CTGCAG 1 cut(s) 1444
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 470
RsaI GTAC 8 cut(s) 214, 406, 755, 888, 1208, 1457, 1472, 1493
RsaNI GTAC 8 cut(s) 213, 405, 754, 887, 1207, 1456, 1471, 1492
SacI GAGCTC 1 cut(s) 182
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 573, 822, 1346
SatI GCNGC 5 cut(s) 96, 996, 1281, 1400, 1440
Sau3AI GATC 3 cut(s) 470, 922, 1528
Sau96I GGNCC 3 cut(s) 712, 783, 1213
ScaI AGTACT 4 cut(s) 755, 1208, 1457, 1493
SchI GAGTC 2 cut(s) 368, 538
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 2 cut(s) 25, 182
SfaNI GCATC 3 cut(s) 302, 324, 1411
SfcI CTRYAG 1 cut(s) 1440
SinI GGWCC 1 cut(s) 712
SphI GCATGC 1 cut(s) 1255
Sse9I AATT 9 cut(s) 63, 165, 342, 372, 517, 536, 636, 823, 1336
SsiI CCGC 5 cut(s) 16, 68, 95, 126, 835
SspMI CTAG 3 cut(s) 857, 1241, 1540
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 2 cut(s) 90, 1331
TaaI ACNGT 9 cut(s) 355, 398, 409, 670, 720, 808, 910, 1460, 1496
TaiI ACGT 2 cut(s) 141, 341
TaqI TCGA 2 cut(s) 5, 194
TasI AATT 9 cut(s) 63, 165, 342, 372, 517, 536, 636, 823, 1336
TatI WGTACW 6 cut(s) 212, 753, 1206, 1455, 1470, 1491
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 5 cut(s) 73, 764, 1012, 1088, 1102
Tru1I TTAA 3 cut(s) 573, 822, 1346
Tru9I TTAA 3 cut(s) 573, 822, 1346
TseFI GTSAC 4 cut(s) 134, 139, 332, 670
TseI GCWGC 4 cut(s) 995, 1280, 1399, 1439
Tsp45I GTSAC 4 cut(s) 134, 139, 332, 670
TspDTI ATGAA 4 cut(s) 24, 244, 962, 1004
TspGWI ACGGA 2 cut(s) 190, 725
Van91I CCANNNNNTGG 1 cut(s) 1210
VneI GTGCAC 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 712
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 2 cut(s) 536, 1336
XbaI TCTAGA 1 cut(s) 1240
XceI RCATGY 2 cut(s) 508, 1255
XmiI GTMKAC 2 cut(s) 5, 509
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 3 cut(s) 857, 1241, 1540
ZraI GACGTC 1 cut(s) 139
ZrmI AGTACT 4 cut(s) 755, 1208, 1457, 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.