Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

11796836 .. 11798683

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011695

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAAACGGTGCAGAAAGACATTAATTCTGGAATGCGGGCTATTCTGATTGATTGGCTAGTAGAGGTTGCTGAAGAGTTCAGGCTGGTACCGGAGACACTATTTCTCACTGTCAACTATGTAGATCGTTATCTTTCTGGCAATGTGATGAAAAGGCAACGATTGCAACTGCTGGGTGTTGCCTGCATGATGATTGCAGCTAAATATGAGGAGATTCATGTTCCTGAGGTGGAAGAGTTCTGTTACATTACGGACAATACATACTTCAAAGACGAGGTTTTGCAAATGGAATCTGATGTGCTGAATCATTTGAAGTTTGAAATGACAGCTCCAACAGCTATGTGCTTTTTGAGGCGATTTTGTTCTGTCGCTGAAATGACTAGTGAGGTTCCACCACTGCTGTTCCAGTACTTGGCCCACTACATTGGAGAGTTATCTCTTCTAGAATACAGCATGCTTGGCTATGCCCCATCACTGATAGCTGCTTCTGCTACTTTCTTGGCCAAATATATACTTTCCCCTTCACAGAAGCCTTGGAATTCTACATTAAGACACTACACAACCTACCAAGCCTCTGATTTGTGTGATTGTGTGAAAGTGCTGCATCACCTGTGTTGTAATGGCAGTGGTTCTAACTTAGCTGCAGTTAGGGAAAAGTACTGTCAACACAAGTACAAGTTTGTGGCCAAGAAGTACTGCCCTCCGTCAATACCTCCGGAGTTCTTCCACGATCTGAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

248

Amino Acids

28.39

Weight (kDa)

5.76

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	4 - 109	9.1e-45	Cyclin, N-terminal domain
Cyclin_C	PF02984	111 - 231	1.7e-34	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	88
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccIII	TCCGGA	1 cut(s)	715
AciI	CCGC	1 cut(s)	37
AcoI	YGGCCR	2 cut(s)	501, 684
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	5 cut(s)	90, 410, 659, 674, 695
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	3 cut(s)	268, 313, 320
AhlI	ACTAGT	1 cut(s)	380
AluBI	AGCT	5 cut(s)	200, 329, 338, 482, 641
AluI	AGCT	5 cut(s)	200, 329, 338, 482, 641
Alw26I	GTCTC	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	3 cut(s)	414, 501, 684
ApeKI	GCWGC	4 cut(s)	197, 482, 601, 641
ApoI	RAATTY	1 cut(s)	538
AseI	ATTAAT	1 cut(s)	24
Asp718I	GGTACC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	225
BalI	TGGCCA	2 cut(s)	503, 686
BanI	GGYRCC	1 cut(s)	88
BbvI	GCAGC	4 cut(s)	209, 469, 588, 628
BccI	CCATC	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	4 cut(s)	59, 381, 443, 742
BfmI	CTRYAG	1 cut(s)	642
BisI	GCNGC	4 cut(s)	198, 483, 602, 642
BlsI	GCNGC	4 cut(s)	199, 484, 603, 643
BmcAI	AGTACT	3 cut(s)	410, 659, 695
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	90, 390
BmsI	GCATC	1 cut(s)	613
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	533
BsaWI	WCCGGW	2 cut(s)	91, 715
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	406
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	715
BseDI	CCNNGG	1 cut(s)	533
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	216, 725
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	209, 469, 588, 628
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	416, 503, 686
BshNI	GGYRCC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	92, 716
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	416, 503, 686
Bsp13I	TCCGGA	1 cut(s)	715
Bsp143I	GATC	2 cut(s)	124, 730
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	3 cut(s)	416, 503, 686
BspCNI	CTCAG	2 cut(s)	217, 726
BspEI	TCCGGA	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	90, 390
BspMAI	CTGCAG	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	2 cut(s)	124, 730
BssT1I	CCWWGG	1 cut(s)	533
Bst4CI	ACNGT	3 cut(s)	10, 112, 662
Bst6I	CTCTTC	3 cut(s)	69, 228, 444
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	39, 184, 455
BstDEI	CTNAG	3 cut(s)	225, 637, 734
BstKTI	GATC	2 cut(s)	127, 733
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	124, 730
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 335, 459, 488
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	4 cut(s)	209, 469, 588, 628
BstXI	CCANNNNNNTGG	1 cut(s)	425
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	416, 503, 686
BtsI	GCAGTG	2 cut(s)	395, 631
BtsIMutI	CAGTG	4 cut(s)	108, 395, 473, 631
Cac8I	GCNNGC	3 cut(s)	39, 184, 455
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	5 cut(s)	89, 409, 658, 673, 694
CviAII	CATG	3 cut(s)	187, 218, 454
CviQI	GTAC	5 cut(s)	89, 409, 658, 673, 694
DdeI	CTNAG	3 cut(s)	225, 637, 734
DpnI	GATC	2 cut(s)	126, 732
DpnII	GATC	2 cut(s)	124, 730
EaeI	YGGCCR	2 cut(s)	501, 684
Eam1104I	CTCTTC	3 cut(s)	69, 228, 444
EarI	CTCTTC	3 cut(s)	69, 228, 444
Eco130I	CCWWGG	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	3 cut(s)	190, 221, 457
FatI	CATG	3 cut(s)	186, 217, 453
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	198, 483, 602, 642
Fsp4HI	GCNGC	4 cut(s)	198, 483, 602, 642
FspBI	CTAG	4 cut(s)	59, 381, 443, 742
GluI	GCNGC	4 cut(s)	198, 483, 602, 642
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	416, 503, 686
HapII	CCGG	2 cut(s)	92, 716
Hin1II	CATG	3 cut(s)	190, 221, 457
HincII	GTYRAC	2 cut(s)	115, 665
HindII	GTYRAC	2 cut(s)	115, 665
HinfI	GANTC	3 cut(s)	214, 290, 304
HpaII	CCGG	2 cut(s)	92, 716
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	2 cut(s)	115, 665
Hpy188I	TCNGA	4 cut(s)	48, 295, 577, 735
Hpy188III	TCNNGA	4 cut(s)	30, 224, 443, 716
Hpy8I	GTNNAC	2 cut(s)	115, 665
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	3 cut(s)	10, 112, 662
HpyCH4V	TGCA	7 cut(s)	13, 166, 186, 197, 283, 604, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 335, 459, 488
HpyF3I	CTNAG	3 cut(s)	225, 637, 734
Hsp92II	CATG	3 cut(s)	190, 221, 457
Kpn2I	TCCGGA	1 cut(s)	715
KpnI	GGTACC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	124, 730
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	4 cut(s)	209, 469, 588, 628
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	4 cut(s)	59, 381, 443, 742
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	126, 732
MboI	GATC	2 cut(s)	124, 730
MboII	GAAGA	4 cut(s)	86, 245, 431, 715
MlsI	TGGCCA	2 cut(s)	503, 686
MluCI	AATT	2 cut(s)	25, 538
MluNI	TGGCCA	2 cut(s)	503, 686
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	9 cut(s)	58, 202, 220, 268, 345, 379, 583, 711, 723
Mox20I	TGGCCA	2 cut(s)	503, 686
MroI	TCCGGA	1 cut(s)	715
MscI	TGGCCA	2 cut(s)	503, 686
MseI	TTAA	2 cut(s)	24, 548
Msp20I	TGGCCA	2 cut(s)	503, 686
MspI	CCGG	2 cut(s)	92, 716
Mva1269I	GAATGC	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	163, 335, 459, 488
NdeII	GATC	2 cut(s)	124, 730
NlaIII	CATG	3 cut(s)	190, 221, 457
NlaIV	GGNNCC	2 cut(s)	90, 390
NspI	RCATGY	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	457
PctI	GAATGC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	214, 290, 304
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	199, 484, 603, 643
PshBI	ATTAAT	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	90, 390
PspPI	GGNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	646
RsaI	GTAC	5 cut(s)	90, 410, 659, 674, 695
RsaNI	GTAC	5 cut(s)	89, 409, 658, 673, 694
SaqAI	TTAA	2 cut(s)	24, 548
SatI	GCNGC	4 cut(s)	198, 483, 602, 642
Sau3AI	GATC	2 cut(s)	124, 730
Sau96I	GGNCC	1 cut(s)	415
ScaI	AGTACT	3 cut(s)	410, 659, 695
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	642
SpeI	ACTAGT	1 cut(s)	380
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	2 cut(s)	25, 538
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	4 cut(s)	59, 381, 443, 742
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	3 cut(s)	10, 112, 662
TasI	AATT	2 cut(s)	25, 538
TatI	WGTACW	4 cut(s)	408, 657, 672, 693
TfiI	GAWTC	3 cut(s)	214, 290, 304
Tru1I	TTAA	2 cut(s)	24, 548
Tru9I	TTAA	2 cut(s)	24, 548
TscAI	CASTG	4 cut(s)	115, 402, 480, 631
TseI	GCWGC	4 cut(s)	197, 482, 601, 641
TspDTI	ATGAA	2 cut(s)	164, 206
TspGWI	ACGGA	2 cut(s)	266, 693
TspRI	CASTG	4 cut(s)	115, 402, 480, 631
Van91I	CCANNNNNTGG	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	1 cut(s)	538
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	4 cut(s)	59, 381, 443, 742
ZrmI	AGTACT	3 cut(s)	410, 659, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.