Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

8239358 .. 8240338

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTTGCAGCAGTACTTGTCTAGCAACAGCACTACTACTGGTTCCGAAGACAAGTACTCTGAAGCGATTTTGCATGAAACAACAGCCATCGTCTGCAATAGAGAACTACTTGTGGACTTGGAAGCAGATGGTGGTATTGCTGATATTGATAACAGCTTCATGGATCAGCAGCTTTGTACAGCCTTTGCTTGTGACATTTACAACCACTTGCGAGCATCCGAGGTCAAGAAAAGGCCTTCCACAGATTATATGGACAAAATTCAGGAAGACATTAATCCAAGCATGCGTGCATTACTAGTCGATTGGCTTGTGGAGGTAGCCGAAGGCTACAGCTTTGTACCTGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGATTCCTATCAATAGAGAACGGTTAAAGTTACTTGGTGTTGCCTGCTTGATGCTTGCATCAAAATATGAATATATGTGTACACCCTCGGTTGAAGAGTTCTGTGGCCTTACTAATAACATTTATTTGGTGGAAGAGGTCTTGGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCATAACAACTAAATGTTTCTTAAGCCGATTTGTTCGAGCTGCTCAAGGGGCCAATGAGCTTCCATCATTGCATTTGGAGTGCTTGGCGAACTACCTTGCAGAACTATCTCTTCTCGATTACAGCATGCTTTGTTATGCATCATCACTTATAGCTGCTTCCGCAATTTTCCTGGCCAATTACATAATTCTACCTTCAAAGAGGCCATGGAATGCTACCTTGCAGCACTACACGCTTTACCAGCCTTCGGATTTGCGCAACTGCGTCAAGGATCTCCATCGCCTATGTTGCAATAACCAGAGTTCTACTTTACCTGCCATCAGAGAGAAATATAGTCAACATGAGTACAGGTGCGTTGCCGAGAAGCAGTGCCCAGCTACAATCCCCGCAGAGTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

327

Amino Acids

36.96

Weight (kDa)

4.85

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	65 - 192	2.1e-42	Cyclin, N-terminal domain
Cyclin_C	PF02984	195 - 316	2.5e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	833
Acc36I	ACCTGC	1 cut(s)	898
AciI	CCGC	2 cut(s)	738, 963
AclWI	GGATC	2 cut(s)	171, 855
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	8 cut(s)	14, 56, 178, 339, 469, 566, 923, 971
AfiI	CCNNNNNNNGG	1 cut(s)	823
AflII	CTTAAG	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	482, 562, 774
AhlI	ACTAGT	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	7 cut(s)	156, 172, 333, 617, 637, 731, 953
AluI	AGCT	7 cut(s)	156, 172, 333, 617, 637, 731, 953
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	171, 855
AoxI	GGCC	5 cut(s)	233, 493, 627, 750, 779
ApeKI	GCWGC	5 cut(s)	7, 169, 617, 731, 799
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	1 cut(s)	627
BaeGI	GKGCMC	1 cut(s)	950
BalI	TGGCCA	1 cut(s)	752
BbsI	GAAGAC	2 cut(s)	54, 273
BbvI	GCAGC	5 cut(s)	19, 181, 604, 718, 811
BccI	CCATC	5 cut(s)	95, 122, 649, 861, 902
BciT130I	CCWGG	1 cut(s)	749
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	2 cut(s)	21, 296
BfmI	CTRYAG	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	898
BisI	GCNGC	5 cut(s)	8, 170, 618, 732, 800
BlsI	GCNGC	5 cut(s)	9, 171, 619, 733, 801
BmcAI	AGTACT	2 cut(s)	14, 56
Bme1390I	CCNGG	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	43, 628
BmrFI	CCNGG	1 cut(s)	749
BmsI	GCATC	4 cut(s)	224, 429, 455, 725
BpiI	GAAGAC	2 cut(s)	54, 273
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	376
BsaBI	GATNNNNATC	3 cut(s)	378, 395, 852
BsaJI	CCNNGG	3 cut(s)	219, 474, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	644
Bse8I	GATNNNNATC	3 cut(s)	378, 395, 852
BseBI	CCWGG	1 cut(s)	749
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	219, 474, 782
BseGI	GGATG	1 cut(s)	215
BseJI	GATNNNNATC	3 cut(s)	378, 395, 852
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	950
BseXI	GCAGC	5 cut(s)	19, 181, 604, 718, 811
BseYI	CCCAGC	1 cut(s)	949
BshFI	GGCC	5 cut(s)	235, 495, 629, 752, 781
BshVI	ATCGAT	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	5 cut(s)	235, 495, 629, 752, 781
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp1407I	TGTACA	2 cut(s)	176, 467
Bsp143I	GATC	3 cut(s)	163, 373, 847
Bsp19I	CCATGG	1 cut(s)	782
BspACI	CCGC	2 cut(s)	738, 963
BspANI	GGCC	5 cut(s)	235, 495, 629, 752, 781
BspCNI	CTCAG	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	43, 628
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	2 cut(s)	171, 855
BspTI	CTTAAG	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	644
BsrGI	TGTACA	2 cut(s)	176, 467
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	219, 474, 782
BssMI	GATC	3 cut(s)	163, 373, 847
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	3 cut(s)	477, 516, 693
BstAFI	CTTAAG	1 cut(s)	598
BstAUI	TGTACA	2 cut(s)	176, 467
BstC8I	GCNNGC	6 cut(s)	213, 284, 288, 433, 444, 704
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	3 cut(s)	166, 376, 850
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	3 cut(s)	163, 373, 847
BstMWI	GCNNNNNNNGC	5 cut(s)	626, 737, 808, 817, 864
BstNI	CCWGG	1 cut(s)	749
BstNSI	RCATGY	2 cut(s)	286, 706
BstSCI	CCNGG	1 cut(s)	747
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	950
BstV1I	GCAGC	5 cut(s)	19, 181, 604, 718, 811
BstV2I	GAAGAC	2 cut(s)	54, 273
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	5 cut(s)	235, 495, 629, 752, 781
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	839
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	950
BtsIMutI	CAGTG	1 cut(s)	950
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	6 cut(s)	213, 284, 288, 433, 444, 704
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	376
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	8 cut(s)	13, 55, 177, 338, 468, 565, 922, 970
CviAII	CATG	6 cut(s)	74, 160, 283, 703, 783, 917
CviQI	GTAC	8 cut(s)	13, 55, 177, 338, 468, 565, 922, 970
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	165, 375, 849
DpnII	GATC	3 cut(s)	163, 373, 847
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	3 cut(s)	477, 516, 693
EarI	CTCTTC	3 cut(s)	477, 516, 693
Eco130I	CCWWGG	1 cut(s)	782
Eco147I	AGGCCT	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	747
EcoRV	GATATC	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	782
EcoT22I	ATGCAT	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
FatI	CATG	6 cut(s)	73, 159, 282, 702, 782, 916
FauI	CCCGC	1 cut(s)	970
Fnu4HI	GCNGC	5 cut(s)	8, 170, 618, 732, 800
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	5 cut(s)	8, 170, 618, 732, 800
FspBI	CTAG	2 cut(s)	21, 296
FspI	TGCGCA	1 cut(s)	833
GlaI	GCGC	1 cut(s)	833
GluI	GCNGC	5 cut(s)	8, 170, 618, 732, 800
GsaI	CCCAGC	1 cut(s)	953
HaeIII	GGCC	5 cut(s)	235, 495, 629, 752, 781
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	834
Hin1II	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	914
HindII	GTYRAC	1 cut(s)	914
HinfI	GANTC	2 cut(s)	391, 539
Hpy166II	GTNNAC	5 cut(s)	115, 364, 468, 470, 914
Hpy188I	TCNGA	5 cut(s)	46, 61, 220, 826, 899
Hpy188III	TCNNGA	3 cut(s)	226, 263, 692
Hpy8I	GTNNAC	5 cut(s)	115, 364, 468, 470, 914
HpyAV	CCTTC	4 cut(s)	246, 317, 780, 831
HpyCH4III	ACNGT	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	5 cut(s)	626, 737, 808, 817, 864
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
HspAI	GCGC	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	163, 373, 847
Lsp1109I	GCAGC	5 cut(s)	19, 181, 604, 718, 811
LweI	GCATC	4 cut(s)	224, 429, 455, 725
MaeI	CTAG	2 cut(s)	21, 296
MaeIII	GTNAC	3 cut(s)	191, 417, 554
MalI	GATC	3 cut(s)	165, 375, 849
MboI	GATC	3 cut(s)	163, 373, 847
MboII	GAAGA	6 cut(s)	59, 278, 494, 533, 534, 680
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	1 cut(s)	950
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	4 cut(s)	258, 741, 754, 762
MluNI	TGGCCA	1 cut(s)	752
MnlI	CCTC	5 cut(s)	214, 307, 484, 517, 771
Mox20I	TGGCCA	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	718
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	273, 413, 599
Msp20I	TGGCCA	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	598
MspR9I	CCNGG	1 cut(s)	749
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	5 cut(s)	626, 737, 808, 817, 864
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	163, 373, 847
NlaIII	CATG	6 cut(s)	77, 163, 286, 706, 786, 920
NlaIV	GGNNCC	2 cut(s)	43, 628
NmeAIII	GCCGAG	1 cut(s)	961
NmuCI	GTSAC	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	833
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	2 cut(s)	286, 706
PaeI	GCATGC	2 cut(s)	286, 706
PceI	AGGCCT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	391, 539
PkrI	GCNGC	5 cut(s)	9, 171, 619, 733, 801
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	747
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	2 cut(s)	43, 628
PspPI	GGNCC	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	847
RsaI	GTAC	8 cut(s)	14, 56, 178, 339, 469, 566, 923, 971
RsaNI	GTAC	8 cut(s)	13, 55, 177, 338, 468, 565, 922, 970
SaqAI	TTAA	3 cut(s)	273, 413, 599
SatI	GCNGC	5 cut(s)	8, 170, 618, 732, 800
Sau3AI	GATC	3 cut(s)	163, 373, 847
Sau96I	GGNCC	1 cut(s)	627
ScaI	AGTACT	2 cut(s)	14, 56
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	1 cut(s)	950
SfaNI	GCATC	4 cut(s)	224, 429, 455, 725
SfcI	CTRYAG	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	598, 621
SmoI	CTYRAG	2 cut(s)	598, 621
SpeI	ACTAGT	1 cut(s)	295
SphI	GCATGC	2 cut(s)	286, 706
Sse9I	AATT	4 cut(s)	258, 741, 754, 762
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	738, 963
SspMI	CTAG	2 cut(s)	21, 296
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	300, 376, 613, 693
TasI	AATT	4 cut(s)	258, 741, 754, 762
TatI	WGTACW	5 cut(s)	12, 54, 176, 467, 921
TfiI	GAWTC	2 cut(s)	391, 539
Tru1I	TTAA	3 cut(s)	273, 413, 599
Tru9I	TTAA	3 cut(s)	273, 413, 599
TscAI	CASTG	1 cut(s)	950
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	5 cut(s)	7, 169, 617, 731, 799
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	90, 148, 471
TspRI	CASTG	1 cut(s)	950
Vha464I	CTTAAG	1 cut(s)	598
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	2 cut(s)	286, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	2 cut(s)	21, 296
ZrmI	AGTACT	2 cut(s)	14, 56
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.