Rh6AG373400

Cyclin_C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001536
Physical Location & Seq
Forward (+)
57228117 .. 57234947
6831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG373400.1

Sequence Viewer

Length: 1227 bp
ATGGAATTCCAGAAATCCCAAAAAACCAAGAAAAGGAAAATTCCCCAAGAAACCCCGACCCGCAAACCCAACTCCGCCGCGAAATCCACCAAGAGTGATCGGGTTAGGTTTTTTGGCCCTAAAATGTCGACCCGGAACCGCCGTGCACTGCCGTCTTCATCTTCGTCCTCGGCGAATAGGCTCCCAATTCCGCAGAATCCGAACAAGAAGGCCATGGCGGCGAAACCCCAAGTGGCGAAGAAGCGAACCGCTCTGTGTGACGTCACCAACCAAAGAAATGGGTCTCAAATTGGTTCACGGAGCTCTGCTTCTTCGTCGAAGCCTATGGTGCCATGTACAACAAAAGTTGTGAAGACGAAGAAGGAAACATCTACTTTCATTAGTAATCATGGCCTCACAGGGAATGTTTTTCCGGCATCACTGAGTTCAAAGTCAAGCATCTTGGTTCCTTTCAGTGACACGTCAATTTCAGGAACTGTTGAGTCTATTGAAACAATTGCCACCAACCATTCTCCCAACAGTAGAGGTACTGTTTTTCCTGCTTCCAGTAGCATAATACACGCTCTCAGAAGCAAAGATGTCTCTCCAAGCAGATCTGTTGGTGGTTCAGTTTCTTTGGATGAGAGCATGTCTACTTCTAATTCTTTGAAGAGTCCAGAATTTGAATATATTGACAATGAGGACATTTCAGAAGTTAGATCTATTGAGAAGAAGACGATAAACAGCCTCTACATTACAGACATCCCACAAATAGAAGGAATTATTCGGAAGAGAGATATATTTACAGATACAGTGACAATAGAAGAAGTTCTTGATATAGATAACAATCTTACGGACCCACAGTTCTGTGCAACCATTGCTTCTGACATATACAAGTACTTGCTTGAATCTGAGGTAAATAGAAGGCCCTCAGTGGACTTTATGGAAACAGTGCAGAAAGACATTAATTCTGGAATGCGGGCTATTCTGATTGATTGGCTAGTAGAGGTTGCTGAAGAGTTCAGGCTGGTACCGGAGACACTATTTCTCACTGTCAACTATGTAGATCGTTATCTTTCTGGCAATGTGATGAAAAGGCAACGATTGCAACTGCTCGGTGTTGCTTGCATGATGATTGCAGCGCGATTTTGTTCTGTTGCTGAAATGACCAGTGAGTACAAGTTTGTGGCCAAGAAGTACTGTCCTCAGTCAATACCTCCAGAGTTCTTCCACGATCTGAGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

408

Amino Acids

45.32

Weight (kDa)

9.39

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 289 - 380 3.6e-31 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
Acc65I GGTACC 1 cut(s) 1009
AccB1I GGYRCC 2 cut(s) 328, 1009
AccBSI CCGCTC 1 cut(s) 251
AccI GTMKAC 2 cut(s) 128, 632
AccII CGCG 2 cut(s) 80, 1123
AciI CCGC 8 cut(s) 61, 75, 78, 139, 191, 218, 249, 958
AcoI YGGCCR 1 cut(s) 1167
AcsI RAATTY 3 cut(s) 5, 39, 659
AcuI CTGAAG 1 cut(s) 1014
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 6 cut(s) 337, 529, 878, 1011, 1157, 1178
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 5 cut(s) 429, 491, 649, 665, 887
AjiI CACGTC 1 cut(s) 462
AloI GAACNNNNNNTCC 2 cut(s) 827, 859
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw21I GWGCWC 2 cut(s) 148, 305
Alw26I GTCTC 3 cut(s) 288, 586, 1010
Alw44I GTGCAC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 5 cut(s) 115, 210, 391, 905, 1167
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 1118
ApoI RAATTY 3 cut(s) 5, 39, 659
AseI ATTAAT 1 cut(s) 945
Asp700I GAANNNNTTC 1 cut(s) 807
Asp718I GGTACC 1 cut(s) 1009
AspLEI GCGC 1 cut(s) 1123
AspS9I GGNCC 3 cut(s) 116, 835, 906
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 1169
BanI GGYRCC 2 cut(s) 328, 1009
BanII GRGCYC 1 cut(s) 305
BbsI GAAGAC 3 cut(s) 147, 359, 719
Bbv12I GWGCWC 2 cut(s) 148, 305
BbvI GCAGC 1 cut(s) 1130
BceAI ACGGC 2 cut(s) 126, 136
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 288, 586, 1010
BfaI CTAG 2 cut(s) 980, 1225
BglI GCCNNNNNGGC 1 cut(s) 218
BglII AGATCT 2 cut(s) 593, 698
BisI GCNGC 3 cut(s) 78, 219, 1119
BlsI GCNGC 3 cut(s) 79, 220, 1120
BmcAI AGTACT 2 cut(s) 878, 1178
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 835
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 3 cut(s) 116, 835, 906
BmiI GGNNCC 6 cut(s) 137, 182, 330, 447, 837, 1011
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 425, 447
BpiI GAAGAC 3 cut(s) 147, 359, 719
BpmI CTGGAG 1 cut(s) 1182
BpuMI CCSGG 1 cut(s) 133
BsaBI GATNNNNATC 2 cut(s) 825, 1050
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 168, 213
BsaWI WCCGGW 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 546, 1149
Bse3DI GCAATG 2 cut(s) 855, 1069
Bse8I GATNNNNATC 2 cut(s) 825, 1050
BseDI CCNNGG 2 cut(s) 168, 213
BseGI GGATG 2 cut(s) 625, 741
BseJI GATNNNNATC 2 cut(s) 825, 1050
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 2 cut(s) 855, 1069
BseMII CTCAG 6 cut(s) 413, 580, 882, 924, 1199, 1208
BseNI ACTGG 2 cut(s) 546, 1149
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 1130
BsgI GTGCAG 1 cut(s) 953
Bsh1236I CGCG 2 cut(s) 80, 1123
BshFI GGCC 5 cut(s) 117, 212, 393, 907, 1169
BshNI GGYRCC 2 cut(s) 328, 1009
BsiHKAI GWGCWC 2 cut(s) 148, 305
BsiSI CCGG 3 cut(s) 133, 413, 1013
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 3 cut(s) 288, 586, 1010
BsmI GAATGC 1 cut(s) 960
BsnI GGCC 5 cut(s) 117, 212, 393, 907, 1169
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 148, 305
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 5 cut(s) 97, 593, 698, 1045, 1213
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 8 cut(s) 61, 75, 78, 139, 191, 218, 249, 958
BspANI GGCC 5 cut(s) 117, 212, 393, 907, 1169
BspCNI CTCAG 6 cut(s) 414, 579, 883, 923, 1198, 1209
BspFNI CGCG 2 cut(s) 80, 1123
BspLI GGNNCC 6 cut(s) 137, 182, 330, 447, 837, 1011
BspT107I GGYRCC 2 cut(s) 328, 1009
BspTNI GGTCTC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 855, 1069
BsrGI TGTACA 1 cut(s) 335
BsrI ACTGG 2 cut(s) 546, 1149
BssECI CCNNGG 2 cut(s) 168, 213
BssMI GATC 5 cut(s) 97, 593, 698, 1045, 1213
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 8 cut(s) 478, 521, 532, 793, 843, 931, 1033, 1181
Bst6I CTCTTC 3 cut(s) 644, 764, 990
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 2 cut(s) 857, 1084
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 960, 1105
BstDEI CTNAG 6 cut(s) 422, 566, 891, 910, 1185, 1217
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 625, 741
BstFNI CGCG 2 cut(s) 80, 1123
BstHHI GCGC 1 cut(s) 1123
BstKTI GATC 5 cut(s) 100, 596, 701, 1048, 1216
BstMAI GTCTC 3 cut(s) 288, 586, 1010
BstMBI GATC 5 cut(s) 97, 593, 698, 1045, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 218, 328, 857, 1084
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 2 cut(s) 80, 1123
BstV1I GCAGC 1 cut(s) 1130
BstV2I GAAGAC 3 cut(s) 147, 359, 719
BstX2I RGATCY 2 cut(s) 593, 698
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 2 cut(s) 593, 698
BsuRI GGCC 5 cut(s) 117, 212, 393, 907, 1169
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 462
BtsCI GGATG 2 cut(s) 625, 741
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 8 cut(s) 146, 419, 460, 798, 918, 936, 1029, 1156
Cac8I GCNNGC 2 cut(s) 960, 1105
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 1123
Cfr13I GGNCC 3 cut(s) 116, 835, 906
Csp6I GTAC 6 cut(s) 336, 528, 877, 1010, 1156, 1177
CviAII CATG 5 cut(s) 214, 333, 389, 628, 1108
CviQI GTAC 6 cut(s) 336, 528, 877, 1010, 1156, 1177
DdeI CTNAG 6 cut(s) 422, 566, 891, 910, 1185, 1217
DpnI GATC 5 cut(s) 99, 595, 700, 1047, 1215
DpnII GATC 5 cut(s) 97, 593, 698, 1045, 1213
EaeI YGGCCR 1 cut(s) 1167
Eam1104I CTCTTC 3 cut(s) 644, 764, 990
EarI CTCTTC 3 cut(s) 644, 764, 990
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 835
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 1014
EcoICRI GAGCTC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 906
EcoRI GAATTC 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 5 cut(s) 217, 336, 392, 631, 1111
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FatI CATG 5 cut(s) 213, 332, 388, 627, 1107
FauI CCCGC 2 cut(s) 68, 951
FblI GTMKAC 2 cut(s) 128, 632
Fnu4HI GCNGC 3 cut(s) 78, 219, 1119
FokI GGATG 2 cut(s) 632, 728
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 78, 219, 1119
FspBI CTAG 2 cut(s) 980, 1225
GlaI GCGC 1 cut(s) 1122
GluI GCNGC 3 cut(s) 78, 219, 1119
GsuI CTGGAG 1 cut(s) 1182
HaeIII GGCC 5 cut(s) 117, 212, 393, 907, 1169
HapII CCGG 3 cut(s) 133, 413, 1013
HhaI GCGC 1 cut(s) 1123
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 5 cut(s) 217, 336, 392, 631, 1111
Hin6I GCGC 1 cut(s) 1121
HinP1I GCGC 1 cut(s) 1121
HincII GTYRAC 2 cut(s) 129, 1036
HindII GTYRAC 2 cut(s) 129, 1036
HinfI GANTC 4 cut(s) 196, 482, 652, 887
HpaII CCGG 3 cut(s) 133, 413, 1013
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 6 cut(s) 129, 146, 296, 633, 916, 1036
Hpy188I TCNGA 8 cut(s) 201, 569, 691, 768, 865, 892, 969, 1218
Hpy188III TCNNGA 6 cut(s) 10, 471, 656, 812, 951, 1199
Hpy8I GTNNAC 6 cut(s) 129, 146, 296, 633, 916, 1036
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 4 cut(s) 202, 355, 749, 897
HpyCH4III ACNGT 8 cut(s) 478, 521, 532, 793, 843, 931, 1033, 1181
HpyCH4IV ACGT 2 cut(s) 261, 461
HpyCH4V TGCA 6 cut(s) 146, 851, 934, 1087, 1107, 1118
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 328, 857, 1084
HpyF3I CTNAG 6 cut(s) 422, 566, 891, 910, 1185, 1217
HpySE526I ACGT 2 cut(s) 261, 461
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 5 cut(s) 217, 336, 392, 631, 1111
HspAI GCGC 1 cut(s) 1121
KpnI GGTACC 1 cut(s) 1013
Kzo9I GATC 5 cut(s) 97, 593, 698, 1045, 1213
LmnI GCTCC 2 cut(s) 186, 300
Lsp1109I GCAGC 1 cut(s) 1130
LweI GCATC 2 cut(s) 425, 447
MaeI CTAG 2 cut(s) 980, 1225
MaeII ACGT 2 cut(s) 261, 461
MaeIII GTNAC 4 cut(s) 257, 262, 455, 793
MalI GATC 5 cut(s) 99, 595, 700, 1047, 1215
MbiI CCGCTC 1 cut(s) 251
MboI GATC 5 cut(s) 97, 593, 698, 1045, 1213
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 2 cut(s) 593, 698
MhlI GDGCHC 2 cut(s) 148, 305
MlsI TGGCCA 1 cut(s) 1169
MluNI TGGCCA 1 cut(s) 1169
MlyI GAGTC 2 cut(s) 491, 661
Mox20I TGGCCA 1 cut(s) 1169
MroXI GAANNNNTTC 1 cut(s) 807
MscI TGGCCA 1 cut(s) 1169
MseI TTAA 1 cut(s) 945
Msp20I TGGCCA 1 cut(s) 1169
MspI CCGG 3 cut(s) 133, 413, 1013
MspR9I CCNGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 960
MvnI CGCG 2 cut(s) 80, 1123
MwoI GCNNNNNNNGC 4 cut(s) 218, 328, 857, 1084
NciI CCSGG 1 cut(s) 133
NcoI CCATGG 1 cut(s) 213
NdeII GATC 5 cut(s) 97, 593, 698, 1045, 1213
NlaIII CATG 5 cut(s) 217, 336, 392, 631, 1111
NlaIV GGNNCC 6 cut(s) 137, 182, 330, 447, 837, 1011
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 4 cut(s) 257, 262, 455, 793
NspI RCATGY 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PctI GAATGC 1 cut(s) 960
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 2 cut(s) 196, 887
PkrI GCNGC 3 cut(s) 79, 220, 1120
PleI GAGTC 2 cut(s) 490, 660
PpsI GAGTC 2 cut(s) 490, 660
PshBI ATTAAT 1 cut(s) 945
Psp124BI GAGCTC 1 cut(s) 305
PspN4I GGNNCC 6 cut(s) 137, 182, 330, 447, 837, 1011
PspPI GGNCC 3 cut(s) 116, 835, 906
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 2 cut(s) 593, 698
RsaI GTAC 6 cut(s) 337, 529, 878, 1011, 1157, 1178
RsaNI GTAC 6 cut(s) 336, 528, 877, 1010, 1156, 1177
SacI GAGCTC 1 cut(s) 305
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 945
SatI GCNGC 3 cut(s) 78, 219, 1119
Sau3AI GATC 5 cut(s) 97, 593, 698, 1045, 1213
Sau96I GGNCC 3 cut(s) 116, 835, 906
ScaI AGTACT 2 cut(s) 878, 1178
SchI GAGTC 2 cut(s) 491, 661
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 148, 305
SetI ASST 8 cut(s) 110, 264, 305, 464, 529, 897, 990, 1198
SfaNI GCATC 2 cut(s) 425, 447
SinI GGWCC 1 cut(s) 835
SsiI CCGC 8 cut(s) 61, 75, 78, 139, 191, 218, 249, 958
SspMI CTAG 2 cut(s) 980, 1225
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 8 cut(s) 478, 521, 532, 793, 843, 931, 1033, 1181
TaiI ACGT 2 cut(s) 264, 464
TaqI TCGA 2 cut(s) 128, 317
TatI WGTACW 4 cut(s) 335, 876, 1155, 1176
TauI GCSGC 2 cut(s) 80, 221
TfiI GAWTC 2 cut(s) 196, 887
Tru1I TTAA 1 cut(s) 945
Tru9I TTAA 1 cut(s) 945
TscAI CASTG 8 cut(s) 153, 426, 460, 798, 918, 936, 1036, 1156
TseFI GTSAC 4 cut(s) 257, 262, 455, 793
TseI GCWGC 1 cut(s) 1118
Tsp45I GTSAC 4 cut(s) 257, 262, 455, 793
TspDTI ATGAA 3 cut(s) 147, 367, 1085
TspGWI ACGGA 2 cut(s) 313, 848
TspRI CASTG 8 cut(s) 153, 426, 460, 798, 918, 936, 1036, 1156
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 835
VspI ATTAAT 1 cut(s) 945
XapI RAATTY 3 cut(s) 5, 39, 659
XceI RCATGY 1 cut(s) 631
XmiI GTMKAC 2 cut(s) 128, 632
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 980, 1225
ZraI GACGTC 1 cut(s) 262
ZrmI AGTACT 2 cut(s) 878, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.