Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033856.1

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Forward (+)

9909 .. 11826

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033856.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggatgattctccaagtaaatcggatggagattcagtttctatggatgagacaatgtcaacttgtgattcttttaagagtccacaagttgagtacatagataacaatgatgttcaaggaattgattctattgatcgaaagacattcagccacctccacatttcagaccatgcagaaacaacagggattgtctgcagtagggaactacttgtggagttggaaggagatggtagcattgctgacattgataaccgtttcatggatccacagctctgtgcaacctttgcttgtgatatctacaagcatttgcgtgcatctgaggtgaagaaaaggccttccacagattacatggacaaaattcagaaggacattaacccgagcatgcgtgcaatacttgttgactggcttgtggaggtggctgaagagtacaggcttgtccccgatacattatatttgactgtgaactacatagaccgatatctttcagggaaccctatgaatagacaacggttacagttacttggagttgcttgtatgatgattgcatcaaaatatgaggagatctgtgcaccccaggttgaagagttttgttacattactgataacacatatttcaaggaagaggtcttggaaatggaatcttctgttttgaattacttgaagtttgaaatgacagctgcaacaactaaatgtttcttaaggcgatttgttcgtgctgctcaaggggccaatgagcttccatcaatgcagttggagtgcttggcaaactaccttgcagaactatctcttctagattacagcatgctttcttatgctccgtcacttgtagctgcttctgcaatcttcctggccaattacataacactcccttcaaagagaccatggaatgctaccttgcagcattacacactttaccagccttctgatttgcgtgaatgcgtcaaggatctccatcgcctatgttgtgataaccacaattctagtttacctgctatcagagagaaatacagtcagcataagtacaagtatgtagccaagaagtactgcccaccgacaattcctacagagtaccaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

359

Amino Acids

41.08

Weight (kDa)

4.97

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	997
AclWI	GGATC	3 cut(s)	257, 270, 954
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	5 cut(s)	95, 428, 1022, 1043, 1070
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflII	CTTAAG	1 cut(s)	697
AgsI	TTSAA	7 cut(s)	116, 581, 616, 652, 661, 668, 873
AjnI	CCWGG	2 cut(s)	573, 846
AluBI	AGCT	4 cut(s)	271, 677, 736, 830
AluI	AGCT	4 cut(s)	271, 677, 736, 830
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	2 cut(s)	44, 871
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	3 cut(s)	257, 270, 954
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	3 cut(s)	332, 726, 849
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	4 cut(s)	677, 716, 830, 898
ApoI	RAATTY	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	726
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	571
BalI	TGGCCA	1 cut(s)	851
BamHI	GGATCC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	4 cut(s)	664, 703, 817, 910
BccI	CCATC	4 cut(s)	20, 221, 748, 960
BciT130I	CCWGG	2 cut(s)	575, 848
BcoDI	GTCTC	2 cut(s)	44, 871
BfaI	CTAG	2 cut(s)	791, 981
BfmI	CTRYAG	2 cut(s)	193, 1062
BfrI	CTTAAG	1 cut(s)	697
BfuAI	ACCTGC	1 cut(s)	997
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	4 cut(s)	678, 717, 831, 899
BlsI	GCNGC	4 cut(s)	679, 718, 832, 900
BmcAI	AGTACT	1 cut(s)	1043
Bme1390I	CCNGG	2 cut(s)	575, 848
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	726
BmiI	GGNNCC	3 cut(s)	264, 491, 727
BmrFI	CCNGG	2 cut(s)	575, 848
BmsI	GCATC	2 cut(s)	323, 554
BpuEI	CTTGAG	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	871
BsaJI	CCNNGG	2 cut(s)	573, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	2 cut(s)	575, 848
BseDI	CCNNGG	2 cut(s)	573, 881
BseGI	GGATG	3 cut(s)	10, 31, 52
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	4 cut(s)	664, 703, 817, 910
BshFI	GGCC	3 cut(s)	334, 728, 851
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	44, 871
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	2 cut(s)	892, 941
BsnI	GGCC	3 cut(s)	334, 728, 851
Bso31I	GGTCTC	1 cut(s)	871
BsoBI	CYCGRG	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	4 cut(s)	133, 262, 561, 946
Bsp19I	CCATGG	1 cut(s)	881
BspANI	GGCC	3 cut(s)	334, 728, 851
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	264, 491, 727
BspMAI	CTGCAG	1 cut(s)	197
BspMI	ACCTGC	1 cut(s)	997
BspPI	GGATC	3 cut(s)	257, 270, 954
BspTI	CTTAAG	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	871
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	573, 881
BssMI	GATC	4 cut(s)	133, 262, 561, 946
BssT1I	CCWWGG	1 cut(s)	881
Bst2UI	CCWGG	2 cut(s)	575, 848
Bst4CI	ACNGT	5 cut(s)	254, 460, 510, 516, 1010
Bst6I	CTCTTC	4 cut(s)	417, 576, 615, 792
BstAFI	CTTAAG	1 cut(s)	697
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	4 cut(s)	312, 383, 387, 803
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	881
BstF5I	GGATG	3 cut(s)	10, 31, 52
BstKTI	GATC	4 cut(s)	136, 265, 564, 949
BstMAI	GTCTC	2 cut(s)	44, 871
BstMBI	GATC	4 cut(s)	133, 262, 561, 946
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 725, 836
BstNI	CCWGG	2 cut(s)	575, 848
BstNSI	RCATGY	2 cut(s)	385, 805
BstSCI	CCNGG	2 cut(s)	573, 846
BstSFI	CTRYAG	2 cut(s)	193, 1062
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	4 cut(s)	664, 703, 817, 910
BstX2I	RGATCY	3 cut(s)	262, 561, 946
BstYI	RGATCY	3 cut(s)	262, 561, 946
BsuRI	GGCC	3 cut(s)	334, 728, 851
BtgI	CCRYGG	1 cut(s)	881
BtgZI	GCGATG	1 cut(s)	938
BtsCI	GGATG	3 cut(s)	10, 31, 52
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	4 cut(s)	312, 383, 387, 803
Cfr13I	GGNCC	1 cut(s)	726
CseI	GACGC	1 cut(s)	928
Csp6I	GTAC	5 cut(s)	94, 427, 1021, 1042, 1069
CviAII	CATG	6 cut(s)	170, 259, 349, 382, 802, 882
CviQI	GTAC	5 cut(s)	94, 427, 1021, 1042, 1069
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	4 cut(s)	135, 264, 563, 948
DpnII	GATC	4 cut(s)	133, 262, 561, 946
EaeI	YGGCCR	1 cut(s)	849
Eam1104I	CTCTTC	4 cut(s)	417, 576, 615, 792
EarI	CTCTTC	4 cut(s)	417, 576, 615, 792
Eco130I	CCWWGG	1 cut(s)	881
Eco147I	AGGCCT	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	871
Eco32I	GATATC	2 cut(s)	295, 479
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	573, 846
EcoRV	GATATC	2 cut(s)	295, 479
EcoT14I	CCWWGG	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	881
FaeI	CATG	6 cut(s)	173, 262, 352, 385, 805, 885
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	6 cut(s)	169, 258, 348, 381, 801, 881
Fnu4HI	GCNGC	4 cut(s)	678, 717, 831, 899
FokI	GGATG	3 cut(s)	17, 38, 59
Fsp4HI	GCNGC	4 cut(s)	678, 717, 831, 899
FspBI	CTAG	2 cut(s)	791, 981
GluI	GCNGC	4 cut(s)	678, 717, 831, 899
HaeIII	GGCC	3 cut(s)	334, 728, 851
HgaI	GACGC	1 cut(s)	928
Hin1II	CATG	6 cut(s)	173, 262, 352, 385, 805, 885
HincII	GTYRAC	2 cut(s)	60, 400
HindII	GTYRAC	2 cut(s)	60, 400
HinfI	GANTC	6 cut(s)	8, 32, 68, 79, 125, 638
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	6 cut(s)	60, 83, 400, 463, 569, 986
Hpy188I	TCNGA	6 cut(s)	25, 166, 319, 363, 925, 998
Hpy188III	TCNNGA	1 cut(s)	791
Hpy8I	GTNNAC	6 cut(s)	60, 83, 400, 463, 569, 986
HpyAV	CCTTC	5 cut(s)	215, 345, 358, 879, 930
HpyCH4III	ACNGT	5 cut(s)	254, 460, 510, 516, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 725, 836
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	6 cut(s)	173, 262, 352, 385, 805, 885
Kzo9I	GATC	4 cut(s)	133, 262, 561, 946
LmnI	GCTCC	1 cut(s)	820
Lsp1109I	GCAGC	4 cut(s)	664, 703, 817, 910
LweI	GCATC	2 cut(s)	323, 554
MaeI	CTAG	2 cut(s)	791, 981
MaeIII	GTNAC	4 cut(s)	510, 516, 590, 819
MalI	GATC	4 cut(s)	135, 264, 563, 948
MboI	GATC	4 cut(s)	133, 262, 561, 946
MboII	GAAGA	7 cut(s)	337, 434, 593, 632, 633, 779, 835
MflI	RGATCY	3 cut(s)	262, 561, 946
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	851
MluCI	AATT	6 cut(s)	120, 357, 652, 853, 976, 1056
MluNI	TGGCCA	1 cut(s)	851
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	198, 732
MnlI	CCTC	5 cut(s)	164, 313, 406, 550, 616
Mox20I	TGGCCA	1 cut(s)	851
MroXI	GAANNNNTTC	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	851
MseI	TTAA	3 cut(s)	75, 372, 698
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	851
MspA1I	CMGCKG	1 cut(s)	677
MspCI	CTTAAG	1 cut(s)	697
MspR9I	CCNGG	2 cut(s)	575, 848
Mva1269I	GAATGC	2 cut(s)	892, 941
MvaI	CCWGG	2 cut(s)	575, 848
MwoI	GCNNNNNNNGC	3 cut(s)	284, 725, 836
NcoI	CCATGG	1 cut(s)	881
NdeII	GATC	4 cut(s)	133, 262, 561, 946
NlaIII	CATG	6 cut(s)	173, 262, 352, 385, 805, 885
NlaIV	GGNNCC	3 cut(s)	264, 491, 727
NmuCI	GTSAC	1 cut(s)	819
NspI	RCATGY	2 cut(s)	385, 805
PaeI	GCATGC	2 cut(s)	385, 805
PceI	AGGCCT	1 cut(s)	334
PctI	GAATGC	2 cut(s)	892, 941
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	5 cut(s)	8, 32, 68, 125, 638
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	679, 718, 832, 900
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	573, 846
PspGI	CCWGG	2 cut(s)	573, 846
PspN4I	GGNNCC	3 cut(s)	264, 491, 727
PspPI	GGNCC	1 cut(s)	726
PstI	CTGCAG	1 cut(s)	197
PsuI	RGATCY	3 cut(s)	262, 561, 946
PsyI	GACNNNGTC	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	5 cut(s)	95, 428, 1022, 1043, 1070
RsaNI	GTAC	5 cut(s)	94, 427, 1021, 1042, 1069
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	75, 372, 698
SatI	GCNGC	4 cut(s)	678, 717, 831, 899
Sau3AI	GATC	4 cut(s)	133, 262, 561, 946
Sau96I	GGNCC	1 cut(s)	726
ScaI	AGTACT	1 cut(s)	1043
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	575, 848
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	323, 554
SfcI	CTRYAG	2 cut(s)	193, 1062
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	697, 720
SmoI	CTYRAG	2 cut(s)	697, 720
SphI	GCATGC	2 cut(s)	385, 805
Sse9I	AATT	6 cut(s)	120, 357, 652, 853, 976, 1056
SseBI	AGGCCT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	791, 981
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	2 cut(s)	573, 846
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	5 cut(s)	254, 460, 510, 516, 1010
TaqI	TCGA	1 cut(s)	136
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	6 cut(s)	120, 357, 652, 853, 976, 1056
TatI	WGTACW	4 cut(s)	93, 426, 1020, 1041
TfiI	GAWTC	5 cut(s)	8, 32, 68, 125, 638
Tru1I	TTAA	3 cut(s)	75, 372, 698
Tru9I	TTAA	3 cut(s)	75, 372, 698
TseFI	GTSAC	1 cut(s)	819
TseI	GCWGC	4 cut(s)	677, 716, 830, 898
Tsp45I	GTSAC	1 cut(s)	819
TspDTI	ATGAA	2 cut(s)	247, 512
TspGWI	ACGGA	1 cut(s)	807
Tth111I	GACNNNGTC	1 cut(s)	55
Vha464I	CTTAAG	1 cut(s)	697
VneI	GTGCAC	1 cut(s)	567
XapI	RAATTY	1 cut(s)	357
XbaI	TCTAGA	1 cut(s)	790
XceI	RCATGY	2 cut(s)	385, 805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	2 cut(s)	791, 981
ZrmI	AGTACT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.