Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

8954843 .. 8955889

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47093

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCAACGTACGTACTAGTGAAGAAACTCATAAGCTTCCTTGAAACAATTACTCCAAAGCCATGTTGCCGCAATACTTGTCTAGCAACAGCACTACCACTGGTTCCGAAGACAATTAAGTACTCTGAAGCGATTTTGCATGAAACAACAGCCATTGTCTGCAATAGAGAACTACTTGTGGACTTGGAAGCAGATGGTGGTATTGCTGATATTGATAACAGCTTCATGGATCAGCAGCTTTGTACAACCTTTGCTTGTGACATTTACAACCACTTGCGAGCATCCGAGGTCAAGAAAAGGCCTTCCACTGATTATATGGACAAAATTCAGAAAGACATTAATCCAAGCATGCGTGCATTACTAGTCGATTGGCTTGTGGAGGTAGCCGAAGGCTGTAGCTTTGTACCTGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGATTCCTATCAATAGAGAACGGTTAAAGTTACTTGGTGTTGCATGCTTGATGCTTGCATCAAAATATGAATATATGTGTACACCCTCGGTTGAAGAGTTCTGTGACCTTACTAATAACATTTATTTGGTGGAAGAGGTCTTGGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCGTAACAACTAAATGTTTCTTAAGCCGATTTGTTCGAGCTGCTCAAGGGGCCAATGAGCTTCCATCATTGCATTTGGAGTGCTTAGCGAACTACCTTGCAGAACTATCTCTTCTCGATTACAGCATGCTTTGTTATGCCTCATCACTTATAGCTGCTTCTGCAATTTTCCTGGCCAATTACATAATGATACCTTCAAAGAGGCCATGGAATGCTACCTTGCAGCACTACACGCTTTACCAGCCTTCGGATTTGCGCAACTGCGTCAAGGATCTCCATCGCCTATGTTGCAATAACCAGAGTTCTACTTTACCTGCTATCATAGAGAAATATAGTCAACATGAGTACAAGTGTGTTGCCGAGAAGCAGTGCCCAGCTACAATCCCTGAAGAGTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

348

Amino Acids

39.42

Weight (kDa)

5.21

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	87 - 214	7.5e-42	Cyclin, N-terminal domain
Cyclin_C	PF02984	216 - 338	2.2e-34	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	964
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	237, 921
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	9 cut(s)	11, 15, 122, 244, 405, 535, 632, 989, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	889
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	4 cut(s)	44, 548, 628, 840
AhlI	ACTAGT	2 cut(s)	16, 361
AjnI	CCWGG	1 cut(s)	813
AluBI	AGCT	8 cut(s)	36, 222, 238, 399, 683, 703, 797, 1019
AluI	AGCT	8 cut(s)	36, 222, 238, 399, 683, 703, 797, 1019
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	237, 921
AoxI	GGCC	4 cut(s)	299, 693, 816, 845
ApeKI	GCWGC	4 cut(s)	235, 683, 797, 865
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AseI	ATTAAT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	1016
BalI	TGGCCA	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	247, 670, 784, 877
BccI	CCATC	3 cut(s)	188, 715, 927
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	1 cut(s)	815
BcoDI	GTCTC	1 cut(s)	404
BcuI	ACTAGT	2 cut(s)	16, 361
BfaI	CTAG	3 cut(s)	17, 83, 362
BfmI	CTRYAG	1 cut(s)	394
BfrI	CTTAAG	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	964
BisI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
BlpI	GCTNAGC	1 cut(s)	727
BlsI	GCNGC	5 cut(s)	71, 237, 685, 799, 867
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	2 cut(s)	105, 694
BmrFI	CCNGG	1 cut(s)	815
BmsI	GCATC	3 cut(s)	290, 495, 521
BpiI	GAAGAC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	727
BpuEI	CTTGAG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	13
BsaBI	GATNNNNATC	3 cut(s)	444, 461, 918
BsaJI	CCNNGG	3 cut(s)	285, 540, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	889
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	710
Bse8I	GATNNNNATC	3 cut(s)	444, 461, 918
BseBI	CCWGG	1 cut(s)	815
BseCI	ATCGAT	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	285, 540, 848
BseGI	GGATG	1 cut(s)	281
BseJI	GATNNNNATC	3 cut(s)	444, 461, 918
BseLI	CCNNNNNNNGG	1 cut(s)	889
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	1016
BseXI	GCAGC	4 cut(s)	247, 670, 784, 877
BseYI	CCCAGC	1 cut(s)	1015
BshFI	GGCC	4 cut(s)	301, 695, 818, 847
BshVI	ATCGAT	1 cut(s)	442
BsiWI	CGTACG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	889
BsmAI	GTCTC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	4 cut(s)	301, 695, 818, 847
Bsp1286I	GDGCHC	1 cut(s)	1016
Bsp1407I	TGTACA	2 cut(s)	242, 533
Bsp143I	GATC	3 cut(s)	229, 439, 913
Bsp1720I	GCTNAGC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	4 cut(s)	301, 695, 818, 847
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	105, 694
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	2 cut(s)	237, 921
BspTI	CTTAAG	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	710
BsrGI	TGTACA	2 cut(s)	242, 533
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	285, 540, 848
BssMI	GATC	3 cut(s)	229, 439, 913
BssT1I	CCWWGG	1 cut(s)	848
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	4 cut(s)	543, 582, 759, 1026
BstAFI	CTTAAG	1 cut(s)	664
BstAUI	TGTACA	2 cut(s)	242, 533
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	6 cut(s)	279, 350, 354, 499, 510, 770
BstDEI	CTNAG	2 cut(s)	408, 727
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	3 cut(s)	232, 442, 916
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	229, 439, 913
BstMWI	GCNNNNNNNGC	5 cut(s)	692, 803, 874, 883, 930
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	3 cut(s)	352, 501, 772
BstSCI	CCNGG	1 cut(s)	813
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	1016
BstSNI	TACGTA	1 cut(s)	13
BstV1I	GCAGC	4 cut(s)	247, 670, 784, 877
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
Bsu15I	ATCGAT	1 cut(s)	442
BsuRI	GGCC	4 cut(s)	301, 695, 818, 847
BsuTUI	ATCGAT	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	848
BtgZI	GCGATG	1 cut(s)	905
BtsCI	GGATG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	1016
BtsIMutI	CAGTG	3 cut(s)	98, 306, 1016
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	6 cut(s)	279, 350, 354, 499, 510, 770
CfoI	GCGC	1 cut(s)	900
Cfr13I	GGNCC	1 cut(s)	693
ClaI	ATCGAT	1 cut(s)	442
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	9 cut(s)	10, 14, 121, 243, 404, 534, 631, 988, 1036
CviAII	CATG	8 cut(s)	63, 140, 226, 349, 498, 769, 849, 983
CviQI	GTAC	9 cut(s)	10, 14, 121, 243, 404, 534, 631, 988, 1036
DdeI	CTNAG	2 cut(s)	408, 727
DpnI	GATC	3 cut(s)	231, 441, 915
DpnII	GATC	3 cut(s)	229, 439, 913
EaeI	YGGCCR	1 cut(s)	816
Eam1104I	CTCTTC	4 cut(s)	543, 582, 759, 1026
EarI	CTCTTC	4 cut(s)	543, 582, 759, 1026
Eco105I	TACGTA	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	848
Eco147I	AGGCCT	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	813
EcoRV	GATATC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	848
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
FatI	CATG	8 cut(s)	62, 139, 225, 348, 497, 768, 848, 982
Fnu4HI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
FspBI	CTAG	3 cut(s)	17, 83, 362
FspI	TGCGCA	1 cut(s)	899
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
GsaI	CCCAGC	1 cut(s)	1019
HaeIII	GGCC	4 cut(s)	301, 695, 818, 847
HgaI	GACGC	1 cut(s)	895
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HincII	GTYRAC	2 cut(s)	6, 980
HindII	GTYRAC	2 cut(s)	6, 980
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	457, 605
Hpy166II	GTNNAC	6 cut(s)	6, 181, 430, 534, 536, 980
Hpy188I	TCNGA	5 cut(s)	108, 127, 286, 330, 892
Hpy188III	TCNNGA	2 cut(s)	292, 758
Hpy8I	GTNNAC	6 cut(s)	6, 181, 430, 534, 536, 980
HpyAV	CCTTC	4 cut(s)	312, 383, 846, 897
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	2 cut(s)	8, 12
HpyF10VI	GCNNNNNNNGC	5 cut(s)	692, 803, 874, 883, 930
HpyF3I	CTNAG	2 cut(s)	408, 727
HpySE526I	ACGT	2 cut(s)	8, 12
Hsp92II	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
HspAI	GCGC	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	229, 439, 913
LpnPI	CCDG	9 cut(s)	86, 420, 800, 827, 896, 953, 969, 1029, 1041
Lsp1109I	GCAGC	4 cut(s)	247, 670, 784, 877
LweI	GCATC	3 cut(s)	290, 495, 521
MaeI	CTAG	3 cut(s)	17, 83, 362
MaeII	ACGT	2 cut(s)	8, 12
MaeIII	GTNAC	5 cut(s)	257, 483, 557, 620, 646
MalI	GATC	3 cut(s)	231, 441, 915
MboI	GATC	3 cut(s)	229, 439, 913
MboII	GAAGA	7 cut(s)	34, 121, 560, 599, 600, 746, 1043
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	1 cut(s)	1016
MlsI	TGGCCA	1 cut(s)	818
MluCI	AATT	5 cut(s)	48, 114, 324, 807, 820
MluNI	TGGCCA	1 cut(s)	818
MnlI	CCTC	6 cut(s)	280, 373, 550, 583, 793, 837
Mox20I	TGGCCA	1 cut(s)	818
MscI	TGGCCA	1 cut(s)	818
MseI	TTAA	4 cut(s)	117, 339, 479, 665
Msp20I	TGGCCA	1 cut(s)	818
MspCI	CTTAAG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	815
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	1 cut(s)	815
MwoI	GCNNNNNNNGC	5 cut(s)	692, 803, 874, 883, 930
NcoI	CCATGG	1 cut(s)	848
NdeII	GATC	3 cut(s)	229, 439, 913
NlaIII	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
NlaIV	GGNNCC	2 cut(s)	105, 694
NmeAIII	GCCGAG	1 cut(s)	1027
NmuCI	GTSAC	2 cut(s)	257, 557
NsbI	TGCGCA	1 cut(s)	899
NspI	RCATGY	3 cut(s)	352, 501, 772
PaeI	GCATGC	3 cut(s)	352, 501, 772
PceI	AGGCCT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	859
PfeI	GAWTC	2 cut(s)	457, 605
Pfl23II	CGTACG	1 cut(s)	9
PkrI	GCNGC	5 cut(s)	71, 237, 685, 799, 867
Ppu21I	YACGTR	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	813
PspFI	CCCAGC	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	813
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	105, 694
PspPI	GGNCC	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	913
RsaI	GTAC	9 cut(s)	11, 15, 122, 244, 405, 535, 632, 989, 1037
RsaNI	GTAC	9 cut(s)	10, 14, 121, 243, 404, 534, 631, 988, 1036
SaqAI	TTAA	4 cut(s)	117, 339, 479, 665
SatI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
Sau3AI	GATC	3 cut(s)	229, 439, 913
Sau96I	GGNCC	1 cut(s)	693
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	1016
SfaNI	GCATC	3 cut(s)	290, 495, 521
SfcI	CTRYAG	1 cut(s)	394
SmlI	CTYRAG	2 cut(s)	664, 687
SmoI	CTYRAG	2 cut(s)	664, 687
SnaBI	TACGTA	1 cut(s)	13
SpeI	ACTAGT	2 cut(s)	16, 361
SphI	GCATGC	3 cut(s)	352, 501, 772
Sse9I	AATT	5 cut(s)	48, 114, 324, 807, 820
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	3 cut(s)	17, 83, 362
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	813
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	2 cut(s)	11, 15
TaqI	TCGA	4 cut(s)	366, 442, 679, 759
TasI	AATT	5 cut(s)	48, 114, 324, 807, 820
TatI	WGTACW	4 cut(s)	120, 242, 533, 987
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	457, 605
Tru1I	TTAA	4 cut(s)	117, 339, 479, 665
Tru9I	TTAA	4 cut(s)	117, 339, 479, 665
TscAI	CASTG	3 cut(s)	105, 313, 1016
TseFI	GTSAC	2 cut(s)	257, 557
TseI	GCWGC	4 cut(s)	235, 683, 797, 865
Tsp45I	GTSAC	2 cut(s)	257, 557
TspDTI	ATGAA	3 cut(s)	156, 214, 537
TspRI	CASTG	3 cut(s)	105, 313, 1016
Vha464I	CTTAAG	1 cut(s)	664
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	3 cut(s)	352, 501, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	3 cut(s)	17, 83, 362
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.