Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002497.1

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

36161 .. 37210

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002497.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgtacgtactagtgaagaaactcataagcttccttgaaacaattactccaaagccatgttgccgcagtacttgtctagcaacagcactactaccggttccgattccgaagacaattaagtactctgaagcgattttgcatgaaacaacagccattgtctgcaatagagaactacttgtggacttggaagcagatgatggtattgctgatattgataacagcttcatggatcagcagctttgtacaacctttgcttgtgacatttacaaccacttgcgagcatccgaggtcaagaaaaggccttccactgattatatggacaaaattcagaaagacattaatccaagcatgcgtgcattactagtcgattggcttgtggaggtagccgaaggctacagctttgtacctgcagagacattgtatttggctgtgaactacatagatcgatatctttcggggattcctatcaatagagaacggttaaagttacttggtgttgcatgcttgatgcttgcatcaaaatatgaatatatgtgtacaccctcggttgaagagttctgtgaccttactaataacatttatttggtggaagaggtcttggaaatggaatcttctgtgttgagttacttgaagtacgaaatgacagccgtaacaactaaatgtttcttaagccgatttgttcgagctgctcaaggggccaatgagcttccatcattgcatttggagtgcttagcgaactaccttgcagaactatctcttctcgattacagcatgctttgttatgcctcatcacttatagctgcttctgcaattttcctggccaattacataatgctaccttcaaagaggccatggaatgctaccttgcagcactacacgctttaccagccttcggatttgcgcaactgcgtcaaggatctccatcgcctatgttgcaataaccagagttctactttacctgctatcagagagaaatatagtcaacatgagtacaagtgtgttgccgagaagcggtgtccagctacaatccctgaagagtaccaagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

349

Amino Acids

39.68

Weight (kDa)

5.3

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	902
Acc36I	ACCTGC	2 cut(s)	415, 967
AciI	CCGC	2 cut(s)	64, 1012
AclWI	GGATC	2 cut(s)	237, 924
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	892, 1011
AflII	CTTAAG	1 cut(s)	667
AgeI	ACCGGT	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	38, 551, 631, 843
AhlI	ACTAGT	2 cut(s)	10, 361
AjnI	CCWGG	1 cut(s)	816
AluBI	AGCT	8 cut(s)	30, 222, 238, 399, 686, 706, 800, 1022
AluI	AGCT	8 cut(s)	30, 222, 238, 399, 686, 706, 800, 1022
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	237, 924
AoxI	GGCC	4 cut(s)	299, 696, 819, 848
ApeKI	GCWGC	4 cut(s)	235, 686, 800, 868
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AseI	ATTAAT	1 cut(s)	339
AsiGI	ACCGGT	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	1 cut(s)	696
BalI	TGGCCA	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	247, 673, 787, 880
BccI	CCATC	3 cut(s)	191, 718, 930
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	1 cut(s)	818
BcoDI	GTCTC	1 cut(s)	407
BcuI	ACTAGT	2 cut(s)	10, 361
BfaI	CTAG	3 cut(s)	11, 77, 362
BfmI	CTRYAG	2 cut(s)	394, 408
BfrI	CTTAAG	1 cut(s)	667
BfuAI	ACCTGC	2 cut(s)	415, 967
BisI	GCNGC	5 cut(s)	64, 236, 687, 801, 869
BlpI	GCTNAGC	1 cut(s)	730
BlsI	GCNGC	5 cut(s)	65, 237, 688, 802, 870
BmcAI	AGTACT	2 cut(s)	70, 122
Bme1390I	CCNGG	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	99, 697
BmrFI	CCNGG	1 cut(s)	818
BmsI	GCATC	3 cut(s)	290, 498, 524
BpiI	GAAGAC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	730
BpuEI	CTTGAG	1 cut(s)	675
Bsa29I	ATCGAT	1 cut(s)	445
BsaAI	YACGTR	1 cut(s)	7
BsaBI	GATNNNNATC	3 cut(s)	447, 464, 921
BsaJI	CCNNGG	3 cut(s)	285, 543, 851
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	892, 1011
Bse118I	RCCGGY	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	713
Bse8I	GATNNNNATC	3 cut(s)	447, 464, 921
BseBI	CCWGG	1 cut(s)	818
BseCI	ATCGAT	1 cut(s)	445
BseDI	CCNNGG	3 cut(s)	285, 543, 851
BseGI	GGATG	1 cut(s)	281
BseJI	GATNNNNATC	3 cut(s)	447, 464, 921
BseLI	CCNNNNNNNGG	2 cut(s)	892, 1011
BseMI	GCAATG	1 cut(s)	713
BseXI	GCAGC	4 cut(s)	247, 673, 787, 880
BshFI	GGCC	4 cut(s)	301, 698, 821, 850
BshTI	ACCGGT	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	892, 1011
BsmAI	GTCTC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	4 cut(s)	301, 698, 821, 850
Bsp1407I	TGTACA	2 cut(s)	242, 536
Bsp143I	GATC	3 cut(s)	229, 442, 916
Bsp1720I	GCTNAGC	1 cut(s)	730
Bsp19I	CCATGG	1 cut(s)	851
BspACI	CCGC	2 cut(s)	64, 1012
BspANI	GGCC	4 cut(s)	301, 698, 821, 850
BspDI	ATCGAT	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	99, 697
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	2 cut(s)	415, 967
BspPI	GGATC	2 cut(s)	237, 924
BspTI	CTTAAG	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	94
BsrGI	TGTACA	2 cut(s)	242, 536
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	285, 543, 851
BssMI	GATC	3 cut(s)	229, 442, 916
BssT1I	CCWWGG	1 cut(s)	851
Bst2UI	CCWGG	1 cut(s)	818
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	4 cut(s)	546, 585, 762, 1029
BstAFI	CTTAAG	1 cut(s)	667
BstAUI	TGTACA	2 cut(s)	242, 536
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	6 cut(s)	279, 350, 354, 502, 513, 773
BstDEI	CTNAG	1 cut(s)	730
BstDSI	CCRYGG	1 cut(s)	851
BstF5I	GGATG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	3 cut(s)	232, 445, 919
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	3 cut(s)	229, 442, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	695, 806, 877, 886, 933
BstNI	CCWGG	1 cut(s)	818
BstNSI	RCATGY	3 cut(s)	352, 504, 775
BstSCI	CCNGG	1 cut(s)	816
BstSFI	CTRYAG	2 cut(s)	394, 408
BstSNI	TACGTA	1 cut(s)	7
BstV1I	GCAGC	4 cut(s)	247, 673, 787, 880
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
Bsu15I	ATCGAT	1 cut(s)	445
BsuRI	GGCC	4 cut(s)	301, 698, 821, 850
BsuTUI	ATCGAT	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	851
BtgZI	GCGATG	1 cut(s)	908
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	306
BveI	ACCTGC	2 cut(s)	415, 967
Cac8I	GCNNGC	6 cut(s)	279, 350, 354, 502, 513, 773
CfoI	GCGC	1 cut(s)	903
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	445
CseI	GACGC	1 cut(s)	898
CspAI	ACCGGT	1 cut(s)	94
CviAII	CATG	8 cut(s)	57, 140, 226, 349, 501, 772, 852, 986
DdeI	CTNAG	1 cut(s)	730
DpnI	GATC	3 cut(s)	231, 444, 918
DpnII	GATC	3 cut(s)	229, 442, 916
EaeI	YGGCCR	1 cut(s)	819
Eam1104I	CTCTTC	4 cut(s)	546, 585, 762, 1029
EarI	CTCTTC	4 cut(s)	546, 585, 762, 1029
Eco105I	TACGTA	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	851
Eco147I	AGGCCT	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	816
EcoRV	GATATC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	851
ErhI	CCWWGG	1 cut(s)	851
FaeI	CATG	8 cut(s)	60, 143, 229, 352, 504, 775, 855, 989
FatI	CATG	8 cut(s)	56, 139, 225, 348, 500, 771, 851, 985
Fnu4HI	GCNGC	5 cut(s)	64, 236, 687, 801, 869
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	64, 236, 687, 801, 869
FspBI	CTAG	3 cut(s)	11, 77, 362
FspI	TGCGCA	1 cut(s)	902
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	5 cut(s)	64, 236, 687, 801, 869
HaeIII	GGCC	4 cut(s)	301, 698, 821, 850
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	898
HhaI	GCGC	1 cut(s)	903
Hin1II	CATG	8 cut(s)	60, 143, 229, 352, 504, 775, 855, 989
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HincII	GTYRAC	1 cut(s)	983
HindII	GTYRAC	1 cut(s)	983
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	3 cut(s)	103, 460, 608
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	5 cut(s)	181, 433, 537, 539, 983
Hpy188I	TCNGA	7 cut(s)	102, 108, 127, 286, 330, 895, 968
Hpy188III	TCNNGA	2 cut(s)	292, 761
Hpy8I	GTNNAC	5 cut(s)	181, 433, 537, 539, 983
HpyAV	CCTTC	4 cut(s)	312, 383, 849, 900
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	5 cut(s)	695, 806, 877, 886, 933
HpyF3I	CTNAG	1 cut(s)	730
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	8 cut(s)	60, 143, 229, 352, 504, 775, 855, 989
HspAI	GCGC	1 cut(s)	901
Kzo9I	GATC	3 cut(s)	229, 442, 916
LpnPI	CCDG	9 cut(s)	108, 420, 803, 830, 899, 956, 972, 1032, 1044
Lsp1109I	GCAGC	4 cut(s)	247, 673, 787, 880
LweI	GCATC	3 cut(s)	290, 498, 524
MaeI	CTAG	3 cut(s)	11, 77, 362
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	5 cut(s)	257, 486, 560, 623, 649
MalI	GATC	3 cut(s)	231, 444, 918
MboI	GATC	3 cut(s)	229, 442, 916
MboII	GAAGA	7 cut(s)	28, 121, 563, 602, 603, 749, 1046
MflI	RGATCY	1 cut(s)	916
MlsI	TGGCCA	1 cut(s)	821
MluCI	AATT	5 cut(s)	42, 114, 324, 810, 823
MluNI	TGGCCA	1 cut(s)	821
MnlI	CCTC	6 cut(s)	280, 373, 553, 586, 796, 840
Mox20I	TGGCCA	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	4 cut(s)	117, 339, 482, 668
Msp20I	TGGCCA	1 cut(s)	821
MspCI	CTTAAG	1 cut(s)	667
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	818
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	1 cut(s)	818
MwoI	GCNNNNNNNGC	5 cut(s)	695, 806, 877, 886, 933
NcoI	CCATGG	1 cut(s)	851
NdeII	GATC	3 cut(s)	229, 442, 916
NlaIII	CATG	8 cut(s)	60, 143, 229, 352, 504, 775, 855, 989
NlaIV	GGNNCC	2 cut(s)	99, 697
NmeAIII	GCCGAG	1 cut(s)	1030
NmuCI	GTSAC	2 cut(s)	257, 560
NsbI	TGCGCA	1 cut(s)	902
NspI	RCATGY	3 cut(s)	352, 504, 775
PaeI	GCATGC	3 cut(s)	352, 504, 775
PceI	AGGCCT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	862
PfeI	GAWTC	3 cut(s)	103, 460, 608
PinAI	ACCGGT	1 cut(s)	94
PkrI	GCNGC	5 cut(s)	65, 237, 688, 802, 870
Ppu21I	YACGTR	1 cut(s)	7
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	816
PspGI	CCWGG	1 cut(s)	816
PspN4I	GGNNCC	2 cut(s)	99, 697
PspPI	GGNCC	1 cut(s)	696
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	916
SaqAI	TTAA	4 cut(s)	117, 339, 482, 668
SatI	GCNGC	5 cut(s)	64, 236, 687, 801, 869
Sau3AI	GATC	3 cut(s)	229, 442, 916
Sau96I	GGNCC	1 cut(s)	696
ScaI	AGTACT	2 cut(s)	70, 122
ScrFI	CCNGG	1 cut(s)	818
SfaNI	GCATC	3 cut(s)	290, 498, 524
SfcI	CTRYAG	2 cut(s)	394, 408
SmlI	CTYRAG	2 cut(s)	667, 690
SmoI	CTYRAG	2 cut(s)	667, 690
SnaBI	TACGTA	1 cut(s)	7
SpeI	ACTAGT	2 cut(s)	10, 361
SphI	GCATGC	3 cut(s)	352, 504, 775
Sse9I	AATT	5 cut(s)	42, 114, 324, 810, 823
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	2 cut(s)	64, 1012
SspMI	CTAG	3 cut(s)	11, 77, 362
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	816
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	4 cut(s)	366, 445, 682, 762
TasI	AATT	5 cut(s)	42, 114, 324, 810, 823
TatI	WGTACW	5 cut(s)	68, 120, 242, 536, 990
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	103, 460, 608
Tru1I	TTAA	4 cut(s)	117, 339, 482, 668
Tru9I	TTAA	4 cut(s)	117, 339, 482, 668
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	257, 560
TseI	GCWGC	4 cut(s)	235, 686, 800, 868
Tsp45I	GTSAC	2 cut(s)	257, 560
TspDTI	ATGAA	3 cut(s)	156, 214, 540
TspRI	CASTG	1 cut(s)	313
Vha464I	CTTAAG	1 cut(s)	667
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	3 cut(s)	352, 504, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	3 cut(s)	11, 77, 362
ZrmI	AGTACT	2 cut(s)	70, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.