Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

9346451 .. 9348760

Gene Structure 2310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG107400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCAATGTACGTACTAGTGAAGAAACTCATAAGCTTCCTTGAAACAATTACTCCAAAGCCATGTTGCCGCAGTACTTGTCTAGCAACAGCACTACTACTGGTTCCAATTCCGAAGACAATTAAGTACTCTGAAGCGATTTTGCATGAAACAACAGCCATTGTCTGCAATAGAGAACTACTTGAGGACTTGGAAGCAGATGGTGGTATTGCTGATATTGATAACAGCTTCATGGATCAGCAGCTTTGTACAACCTTTGCTTGTGACATTTACAACCACTTGCGAGCATCCGAGGTCAAGAAAAGGCCTTCCACTGATTATATGGACAAAATTCAGAAAGACATTAATCCAAGCATGCGTGCATTACTAGTCGATTGGCTTGTGGAGGTAGCCGAAGGCTACAGCTTTGTACCTGCAGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGATTCCTATCAATAGAGAACGGTTAAAGTTACTTGGTGTTGCATGCTTGATGCTTGCATCAAAATATGAATATATGTGTACACCCTCGGTTGAAGAGTTCTGTGACCTTACTAATAACATTTATTTGGTGGAAGAGGTCGTGGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCGTAACAACTAAATGTTTCTTAAGCCGATTTGTTCGAGCTGCTCAAGGGGCCAATGAGCTTCCATCATTGCATTTGGAGTGCTTAGCGAACTACCTTGCAGAACTATCTCTTCTCGATTACAGCATGCTTTGTTATGCCTCATCACTTATAGCTGCTTCTGCAATTTTCCTGGCCAATTACATAATGATACCTTCAAAGAGGCCATGGAATGCTACCTTGCAGCACTACACGCTTTACCAGCCTTCGGATTTGCGCAACTGCGTCAAGGATCTCCATCGCCTATGTTGCAATAACCAGAGTTCTACTTTACCTGCTATCAGAGAGAAATATAGTCAACATGAGTACAAGTGTGTTGCCGAGAAGCAGTGCCCAGCTACAATCCCTGAAGAGTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

351

Amino Acids

39.84

Weight (kDa)

5.22

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	89 - 217	3e-40	Cyclin, N-terminal domain
Cyclin_C	PF02984	219 - 341	2.4e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	908
Acc36I	ACCTGC	2 cut(s)	421, 973
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	243, 930
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	898
AflII	CTTAAG	1 cut(s)	673
AgsI	TTSAA	4 cut(s)	44, 557, 637, 849
AhlI	ACTAGT	2 cut(s)	16, 367
AjnI	CCWGG	1 cut(s)	822
AluBI	AGCT	8 cut(s)	36, 228, 244, 405, 692, 712, 806, 1028
AluI	AGCT	8 cut(s)	36, 228, 244, 405, 692, 712, 806, 1028
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	243, 930
AoxI	GGCC	4 cut(s)	305, 702, 825, 854
ApeKI	GCWGC	4 cut(s)	241, 692, 806, 874
ApoI	RAATTY	1 cut(s)	330
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	702
BaeGI	GKGCMC	1 cut(s)	1025
BalI	TGGCCA	1 cut(s)	827
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	253, 679, 793, 886
BccI	CCATC	3 cut(s)	194, 724, 936
BceAI	ACGGC	1 cut(s)	638
BciT130I	CCWGG	1 cut(s)	824
BcoDI	GTCTC	1 cut(s)	413
BcuI	ACTAGT	2 cut(s)	16, 367
BfaI	CTAG	3 cut(s)	17, 83, 368
BfmI	CTRYAG	2 cut(s)	400, 414
BfrI	CTTAAG	1 cut(s)	673
BfuAI	ACCTGC	2 cut(s)	421, 973
BisI	GCNGC	5 cut(s)	70, 242, 693, 807, 875
BlpI	GCTNAGC	1 cut(s)	736
BlsI	GCNGC	5 cut(s)	71, 243, 694, 808, 876
BmcAI	AGTACT	2 cut(s)	76, 128
Bme1390I	CCNGG	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	2 cut(s)	105, 703
BmrFI	CCNGG	1 cut(s)	824
BmsI	GCATC	3 cut(s)	296, 504, 530
BpiI	GAAGAC	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	736
BpuEI	CTTGAG	2 cut(s)	203, 681
Bsa29I	ATCGAT	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	13
BsaBI	GATNNNNATC	3 cut(s)	453, 470, 927
BsaJI	CCNNGG	3 cut(s)	291, 549, 857
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	898
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	719
Bse8I	GATNNNNATC	3 cut(s)	453, 470, 927
BseBI	CCWGG	1 cut(s)	824
BseCI	ATCGAT	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	291, 549, 857
BseGI	GGATG	1 cut(s)	287
BseJI	GATNNNNATC	3 cut(s)	453, 470, 927
BseLI	CCNNNNNNNGG	1 cut(s)	898
BseMI	GCAATG	1 cut(s)	719
BseNI	ACTGG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	1025
BseXI	GCAGC	4 cut(s)	253, 679, 793, 886
BseYI	CCCAGC	1 cut(s)	1024
BshFI	GGCC	4 cut(s)	307, 704, 827, 856
BshVI	ATCGAT	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	898
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	4 cut(s)	307, 704, 827, 856
Bsp1286I	GDGCHC	1 cut(s)	1025
Bsp1407I	TGTACA	2 cut(s)	248, 542
Bsp143I	GATC	3 cut(s)	235, 448, 922
Bsp1720I	GCTNAGC	1 cut(s)	736
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	4 cut(s)	307, 704, 827, 856
BspDI	ATCGAT	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	105, 703
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	2 cut(s)	421, 973
BspPI	GGATC	2 cut(s)	243, 930
BspTI	CTTAAG	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	719
BsrGI	TGTACA	2 cut(s)	248, 542
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	291, 549, 857
BssMI	GATC	3 cut(s)	235, 448, 922
BssT1I	CCWWGG	1 cut(s)	857
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	4 cut(s)	552, 591, 768, 1035
BstAFI	CTTAAG	1 cut(s)	673
BstAUI	TGTACA	2 cut(s)	248, 542
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	6 cut(s)	285, 356, 360, 508, 519, 779
BstDEI	CTNAG	1 cut(s)	736
BstDSI	CCRYGG	1 cut(s)	857
BstF5I	GGATG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	3 cut(s)	238, 451, 925
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	3 cut(s)	235, 448, 922
BstMWI	GCNNNNNNNGC	5 cut(s)	701, 812, 883, 892, 939
BstNI	CCWGG	1 cut(s)	824
BstNSI	RCATGY	3 cut(s)	358, 510, 781
BstSCI	CCNGG	1 cut(s)	822
BstSFI	CTRYAG	2 cut(s)	400, 414
BstSLI	GKGCMC	1 cut(s)	1025
BstSNI	TACGTA	1 cut(s)	13
BstV1I	GCAGC	4 cut(s)	253, 679, 793, 886
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
Bsu15I	ATCGAT	1 cut(s)	451
BsuRI	GGCC	4 cut(s)	307, 704, 827, 856
BsuTUI	ATCGAT	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	857
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	2 cut(s)	312, 1025
BveI	ACCTGC	2 cut(s)	421, 973
Cac8I	GCNNGC	6 cut(s)	285, 356, 360, 508, 519, 779
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	702
ClaI	ATCGAT	1 cut(s)	451
CseI	GACGC	1 cut(s)	904
CviAII	CATG	8 cut(s)	63, 146, 232, 355, 507, 778, 858, 992
DdeI	CTNAG	1 cut(s)	736
DpnI	GATC	3 cut(s)	237, 450, 924
DpnII	GATC	3 cut(s)	235, 448, 922
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	4 cut(s)	552, 591, 768, 1035
EarI	CTCTTC	4 cut(s)	552, 591, 768, 1035
Eco105I	TACGTA	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	857
Eco147I	AGGCCT	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	822
EcoRV	GATATC	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	857
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	8 cut(s)	66, 149, 235, 358, 510, 781, 861, 995
FatI	CATG	8 cut(s)	62, 145, 231, 354, 506, 777, 857, 991
Fnu4HI	GCNGC	5 cut(s)	70, 242, 693, 807, 875
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	5 cut(s)	70, 242, 693, 807, 875
FspBI	CTAG	3 cut(s)	17, 83, 368
FspI	TGCGCA	1 cut(s)	908
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	5 cut(s)	70, 242, 693, 807, 875
GsaI	CCCAGC	1 cut(s)	1028
HaeIII	GGCC	4 cut(s)	307, 704, 827, 856
HgaI	GACGC	1 cut(s)	904
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	8 cut(s)	66, 149, 235, 358, 510, 781, 861, 995
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	1 cut(s)	989
HindII	GTYRAC	1 cut(s)	989
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	466, 614
Hpy166II	GTNNAC	4 cut(s)	439, 543, 545, 989
Hpy188I	TCNGA	6 cut(s)	114, 133, 292, 336, 901, 974
Hpy188III	TCNNGA	2 cut(s)	298, 767
Hpy8I	GTNNAC	4 cut(s)	439, 543, 545, 989
HpyAV	CCTTC	4 cut(s)	318, 389, 855, 906
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	5 cut(s)	701, 812, 883, 892, 939
HpyF3I	CTNAG	1 cut(s)	736
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	8 cut(s)	66, 149, 235, 358, 510, 781, 861, 995
HspAI	GCGC	1 cut(s)	907
Kzo9I	GATC	3 cut(s)	235, 448, 922
LpnPI	CCDG	9 cut(s)	86, 426, 809, 836, 905, 962, 978, 1038, 1050
Lsp1109I	GCAGC	4 cut(s)	253, 679, 793, 886
LweI	GCATC	3 cut(s)	296, 504, 530
MaeI	CTAG	3 cut(s)	17, 83, 368
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	5 cut(s)	263, 492, 566, 629, 655
MalI	GATC	3 cut(s)	237, 450, 924
MboI	GATC	3 cut(s)	235, 448, 922
MboII	GAAGA	7 cut(s)	34, 127, 569, 608, 609, 755, 1052
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	1 cut(s)	1025
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	6 cut(s)	48, 108, 120, 330, 816, 829
MluNI	TGGCCA	1 cut(s)	827
MnlI	CCTC	7 cut(s)	178, 286, 379, 559, 592, 802, 846
Mox20I	TGGCCA	1 cut(s)	827
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	4 cut(s)	123, 345, 488, 674
Msp20I	TGGCCA	1 cut(s)	827
MspCI	CTTAAG	1 cut(s)	673
MspR9I	CCNGG	1 cut(s)	824
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	824
MwoI	GCNNNNNNNGC	5 cut(s)	701, 812, 883, 892, 939
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	3 cut(s)	235, 448, 922
NlaIII	CATG	8 cut(s)	66, 149, 235, 358, 510, 781, 861, 995
NlaIV	GGNNCC	2 cut(s)	105, 703
NmeAIII	GCCGAG	1 cut(s)	1036
NmuCI	GTSAC	2 cut(s)	263, 566
NsbI	TGCGCA	1 cut(s)	908
NspI	RCATGY	3 cut(s)	358, 510, 781
PaeI	GCATGC	3 cut(s)	358, 510, 781
PceI	AGGCCT	1 cut(s)	307
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	466, 614
PkrI	GCNGC	5 cut(s)	71, 243, 694, 808, 876
Ppu21I	YACGTR	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	822
PspFI	CCCAGC	1 cut(s)	1024
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	2 cut(s)	105, 703
PspPI	GGNCC	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	922
SaqAI	TTAA	4 cut(s)	123, 345, 488, 674
SatI	GCNGC	5 cut(s)	70, 242, 693, 807, 875
Sau3AI	GATC	3 cut(s)	235, 448, 922
Sau96I	GGNCC	1 cut(s)	702
ScaI	AGTACT	2 cut(s)	76, 128
ScrFI	CCNGG	1 cut(s)	824
SduI	GDGCHC	1 cut(s)	1025
SfaNI	GCATC	3 cut(s)	296, 504, 530
SfcI	CTRYAG	2 cut(s)	400, 414
SmlI	CTYRAG	3 cut(s)	182, 673, 696
SmoI	CTYRAG	3 cut(s)	182, 673, 696
SnaBI	TACGTA	1 cut(s)	13
SpeI	ACTAGT	2 cut(s)	16, 367
SphI	GCATGC	3 cut(s)	358, 510, 781
Sse9I	AATT	6 cut(s)	48, 108, 120, 330, 816, 829
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	3 cut(s)	17, 83, 368
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	822
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	4 cut(s)	372, 451, 688, 768
TasI	AATT	6 cut(s)	48, 108, 120, 330, 816, 829
TatI	WGTACW	5 cut(s)	74, 126, 248, 542, 996
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	466, 614
Tru1I	TTAA	4 cut(s)	123, 345, 488, 674
Tru9I	TTAA	4 cut(s)	123, 345, 488, 674
TscAI	CASTG	2 cut(s)	319, 1025
TseFI	GTSAC	2 cut(s)	263, 566
TseI	GCWGC	4 cut(s)	241, 692, 806, 874
Tsp45I	GTSAC	2 cut(s)	263, 566
TspDTI	ATGAA	3 cut(s)	162, 220, 546
TspRI	CASTG	2 cut(s)	319, 1025
Vha464I	CTTAAG	1 cut(s)	673
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	3 cut(s)	358, 510, 781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XspI	CTAG	3 cut(s)	17, 83, 368
ZrmI	AGTACT	2 cut(s)	76, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.