Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

8611182 .. 8612353

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG105100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCAACGTACGTACTAGTGAAGAAACTCATAAGCTTCCTTGAAACAATTACTCCAAAGCCATGTTGCCGCAATACTTGTCTAGCAACAGCACTACCACTGGTTCCGAAGACAATTAAGTACTCTGAAGCGATTTTGCATGAAACAACAGCCATTGTCTGCAATAGAGAACTACTTGTGGACTTGGAAGCAGATGGTGGTATTGCTGATATTGATAACAGCTTCATGGATCAGCAGCTTTGTACAACCTTTGCTTGTGACATTTACAACCACTTGCGAGCATCCGAGGTCAAGAAAAGGCCTTCCACTGATTATATGGACAAAATTCAGAAAGACATTAATCCAAGCATGCGTGCATTACTAGTCGATTGGCTTGTGGAGGTAGCCGAAGGCTGTAGCTTTGTACCTGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGATTCCTATCAATAGAGAACGGTTAAAGTTACTTGGTGTTGCATGCTTGATGCTTGCATCAAAATATGAATATATGTGTACACCCTCGGTTGAAGAGTTCTGTGACCTTACTAATAACATTTATTTGGTGGAAGAGGTCTTGGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCGTAACAACTAAATGTTTCTTAAGCCGATTTGTTCGAGCTGCTCAAGGGGCCAATGAGCTTCCATCATTGCATTTGGAGTGCTTAGCGAACTACCTTGCAGAACTATCTCTTCTCGATTACAGCATGCTTTGTTATGCCTCATCACTTATAGCTGCTTCTGCAATTTTCCTGGCCAATTACATAATGATACCTTCAAAGAGGCCATGGAATGCTACCTTGCAGCACTACACGCTTTACCAGCCTTCGGATTTGCGCAACTGCGTCAAGGATCTCCATCGCCTATGTTGCAATAACCAGAGTTCTACTTTACCTGCTATCATAGAGAAATATAGTCAACATGAGTACAAGTGTGTTGCCGAGAAGCAGTGCCCAGCTACAATCCCTGAAGAGTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

348

Amino Acids

39.42

Weight (kDa)

5.21

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	87 - 214	7.5e-42	Cyclin, N-terminal domain
Cyclin_C	PF02984	216 - 338	2.2e-34	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	964
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	237, 921
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	9 cut(s)	11, 15, 122, 244, 405, 535, 632, 989, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	889
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	4 cut(s)	44, 548, 628, 840
AhlI	ACTAGT	2 cut(s)	16, 361
AjnI	CCWGG	1 cut(s)	813
AluBI	AGCT	8 cut(s)	36, 222, 238, 399, 683, 703, 797, 1019
AluI	AGCT	8 cut(s)	36, 222, 238, 399, 683, 703, 797, 1019
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	237, 921
AoxI	GGCC	4 cut(s)	299, 693, 816, 845
ApeKI	GCWGC	4 cut(s)	235, 683, 797, 865
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AseI	ATTAAT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	1016
BalI	TGGCCA	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	247, 670, 784, 877
BccI	CCATC	3 cut(s)	188, 715, 927
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	1 cut(s)	815
BcoDI	GTCTC	1 cut(s)	404
BcuI	ACTAGT	2 cut(s)	16, 361
BfaI	CTAG	3 cut(s)	17, 83, 362
BfmI	CTRYAG	1 cut(s)	394
BfrI	CTTAAG	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	964
BisI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
BlpI	GCTNAGC	1 cut(s)	727
BlsI	GCNGC	5 cut(s)	71, 237, 685, 799, 867
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	2 cut(s)	105, 694
BmrFI	CCNGG	1 cut(s)	815
BmsI	GCATC	3 cut(s)	290, 495, 521
BpiI	GAAGAC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	727
BpuEI	CTTGAG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	13
BsaBI	GATNNNNATC	3 cut(s)	444, 461, 918
BsaJI	CCNNGG	3 cut(s)	285, 540, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	889
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	710
Bse8I	GATNNNNATC	3 cut(s)	444, 461, 918
BseBI	CCWGG	1 cut(s)	815
BseCI	ATCGAT	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	285, 540, 848
BseGI	GGATG	1 cut(s)	281
BseJI	GATNNNNATC	3 cut(s)	444, 461, 918
BseLI	CCNNNNNNNGG	1 cut(s)	889
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	1016
BseXI	GCAGC	4 cut(s)	247, 670, 784, 877
BseYI	CCCAGC	1 cut(s)	1015
BshFI	GGCC	4 cut(s)	301, 695, 818, 847
BshVI	ATCGAT	1 cut(s)	442
BsiWI	CGTACG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	889
BsmAI	GTCTC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	4 cut(s)	301, 695, 818, 847
Bsp1286I	GDGCHC	1 cut(s)	1016
Bsp1407I	TGTACA	2 cut(s)	242, 533
Bsp143I	GATC	3 cut(s)	229, 439, 913
Bsp1720I	GCTNAGC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	4 cut(s)	301, 695, 818, 847
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	105, 694
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	2 cut(s)	237, 921
BspTI	CTTAAG	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	710
BsrGI	TGTACA	2 cut(s)	242, 533
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	285, 540, 848
BssMI	GATC	3 cut(s)	229, 439, 913
BssT1I	CCWWGG	1 cut(s)	848
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	4 cut(s)	543, 582, 759, 1026
BstAFI	CTTAAG	1 cut(s)	664
BstAUI	TGTACA	2 cut(s)	242, 533
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	6 cut(s)	279, 350, 354, 499, 510, 770
BstDEI	CTNAG	2 cut(s)	408, 727
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	3 cut(s)	232, 442, 916
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	229, 439, 913
BstMWI	GCNNNNNNNGC	5 cut(s)	692, 803, 874, 883, 930
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	3 cut(s)	352, 501, 772
BstSCI	CCNGG	1 cut(s)	813
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	1016
BstSNI	TACGTA	1 cut(s)	13
BstV1I	GCAGC	4 cut(s)	247, 670, 784, 877
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
Bsu15I	ATCGAT	1 cut(s)	442
BsuRI	GGCC	4 cut(s)	301, 695, 818, 847
BsuTUI	ATCGAT	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	848
BtgZI	GCGATG	1 cut(s)	905
BtsCI	GGATG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	1016
BtsIMutI	CAGTG	3 cut(s)	98, 306, 1016
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	6 cut(s)	279, 350, 354, 499, 510, 770
CfoI	GCGC	1 cut(s)	900
Cfr13I	GGNCC	1 cut(s)	693
ClaI	ATCGAT	1 cut(s)	442
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	9 cut(s)	10, 14, 121, 243, 404, 534, 631, 988, 1036
CviAII	CATG	8 cut(s)	63, 140, 226, 349, 498, 769, 849, 983
CviQI	GTAC	9 cut(s)	10, 14, 121, 243, 404, 534, 631, 988, 1036
DdeI	CTNAG	2 cut(s)	408, 727
DpnI	GATC	3 cut(s)	231, 441, 915
DpnII	GATC	3 cut(s)	229, 439, 913
EaeI	YGGCCR	1 cut(s)	816
Eam1104I	CTCTTC	4 cut(s)	543, 582, 759, 1026
EarI	CTCTTC	4 cut(s)	543, 582, 759, 1026
Eco105I	TACGTA	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	848
Eco147I	AGGCCT	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	813
EcoRV	GATATC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	848
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
FatI	CATG	8 cut(s)	62, 139, 225, 348, 497, 768, 848, 982
Fnu4HI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
FspBI	CTAG	3 cut(s)	17, 83, 362
FspI	TGCGCA	1 cut(s)	899
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
GsaI	CCCAGC	1 cut(s)	1019
HaeIII	GGCC	4 cut(s)	301, 695, 818, 847
HgaI	GACGC	1 cut(s)	895
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HincII	GTYRAC	2 cut(s)	6, 980
HindII	GTYRAC	2 cut(s)	6, 980
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	457, 605
Hpy166II	GTNNAC	6 cut(s)	6, 181, 430, 534, 536, 980
Hpy188I	TCNGA	5 cut(s)	108, 127, 286, 330, 892
Hpy188III	TCNNGA	2 cut(s)	292, 758
Hpy8I	GTNNAC	6 cut(s)	6, 181, 430, 534, 536, 980
HpyAV	CCTTC	4 cut(s)	312, 383, 846, 897
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	2 cut(s)	8, 12
HpyF10VI	GCNNNNNNNGC	5 cut(s)	692, 803, 874, 883, 930
HpyF3I	CTNAG	2 cut(s)	408, 727
HpySE526I	ACGT	2 cut(s)	8, 12
Hsp92II	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
HspAI	GCGC	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	229, 439, 913
LpnPI	CCDG	9 cut(s)	86, 420, 800, 827, 896, 953, 969, 1029, 1041
Lsp1109I	GCAGC	4 cut(s)	247, 670, 784, 877
LweI	GCATC	3 cut(s)	290, 495, 521
MaeI	CTAG	3 cut(s)	17, 83, 362
MaeII	ACGT	2 cut(s)	8, 12
MaeIII	GTNAC	5 cut(s)	257, 483, 557, 620, 646
MalI	GATC	3 cut(s)	231, 441, 915
MboI	GATC	3 cut(s)	229, 439, 913
MboII	GAAGA	7 cut(s)	34, 121, 560, 599, 600, 746, 1043
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	1 cut(s)	1016
MlsI	TGGCCA	1 cut(s)	818
MluCI	AATT	5 cut(s)	48, 114, 324, 807, 820
MluNI	TGGCCA	1 cut(s)	818
MnlI	CCTC	6 cut(s)	280, 373, 550, 583, 793, 837
Mox20I	TGGCCA	1 cut(s)	818
MscI	TGGCCA	1 cut(s)	818
MseI	TTAA	4 cut(s)	117, 339, 479, 665
Msp20I	TGGCCA	1 cut(s)	818
MspCI	CTTAAG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	815
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	1 cut(s)	815
MwoI	GCNNNNNNNGC	5 cut(s)	692, 803, 874, 883, 930
NcoI	CCATGG	1 cut(s)	848
NdeII	GATC	3 cut(s)	229, 439, 913
NlaIII	CATG	8 cut(s)	66, 143, 229, 352, 501, 772, 852, 986
NlaIV	GGNNCC	2 cut(s)	105, 694
NmeAIII	GCCGAG	1 cut(s)	1027
NmuCI	GTSAC	2 cut(s)	257, 557
NsbI	TGCGCA	1 cut(s)	899
NspI	RCATGY	3 cut(s)	352, 501, 772
PaeI	GCATGC	3 cut(s)	352, 501, 772
PceI	AGGCCT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	859
PfeI	GAWTC	2 cut(s)	457, 605
Pfl23II	CGTACG	1 cut(s)	9
PkrI	GCNGC	5 cut(s)	71, 237, 685, 799, 867
Ppu21I	YACGTR	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	813
PspFI	CCCAGC	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	813
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	105, 694
PspPI	GGNCC	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	913
RsaI	GTAC	9 cut(s)	11, 15, 122, 244, 405, 535, 632, 989, 1037
RsaNI	GTAC	9 cut(s)	10, 14, 121, 243, 404, 534, 631, 988, 1036
SaqAI	TTAA	4 cut(s)	117, 339, 479, 665
SatI	GCNGC	5 cut(s)	70, 236, 684, 798, 866
Sau3AI	GATC	3 cut(s)	229, 439, 913
Sau96I	GGNCC	1 cut(s)	693
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	1016
SfaNI	GCATC	3 cut(s)	290, 495, 521
SfcI	CTRYAG	1 cut(s)	394
SmlI	CTYRAG	2 cut(s)	664, 687
SmoI	CTYRAG	2 cut(s)	664, 687
SnaBI	TACGTA	1 cut(s)	13
SpeI	ACTAGT	2 cut(s)	16, 361
SphI	GCATGC	3 cut(s)	352, 501, 772
Sse9I	AATT	5 cut(s)	48, 114, 324, 807, 820
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	3 cut(s)	17, 83, 362
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	813
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	2 cut(s)	11, 15
TaqI	TCGA	4 cut(s)	366, 442, 679, 759
TasI	AATT	5 cut(s)	48, 114, 324, 807, 820
TatI	WGTACW	4 cut(s)	120, 242, 533, 987
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	457, 605
Tru1I	TTAA	4 cut(s)	117, 339, 479, 665
Tru9I	TTAA	4 cut(s)	117, 339, 479, 665
TscAI	CASTG	3 cut(s)	105, 313, 1016
TseFI	GTSAC	2 cut(s)	257, 557
TseI	GCWGC	4 cut(s)	235, 683, 797, 865
Tsp45I	GTSAC	2 cut(s)	257, 557
TspDTI	ATGAA	3 cut(s)	156, 214, 537
TspRI	CASTG	3 cut(s)	105, 313, 1016
Vha464I	CTTAAG	1 cut(s)	664
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	3 cut(s)	352, 501, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	3 cut(s)	17, 83, 362
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.