Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

40104505 .. 40107868

Gene Structure 3364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1344200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGTCGAACCAGAACCGTCGTTCGGCGTTCCCCTCATCCTTGGCGAAACGGCAGGCTTTGTCATCGTCTTCGGCATCGGGGAATGGTGGGAAGGCTGTGGCAGCTGAGCCGCATTTGGGAAAGAAGCGTGCGCCTCTTAGTAACCTGACGAATAGGAACAGTGTGCCTAACAATGGTCTACGGAGCTCAGGAGGATCATCGTGCGCTTTGGTACCATCCACAAATAAGATTGCCAAAGTGAAAAGGGGACCTCCTGCTTGCACTGGTAATAAAGGCGTGTCAGCGAGTAACCCGCCTCCACCCTTCTGTGTTAAACCAAATCTACCTGTTCTTCCAAAGGTTACATCTTGCCCGAGAAGGGAGGAAGCTGCTCCTAGCAATGTCCCTAGCACTTTCGCTATACCTGCCCCGTGCAGCATGGATGTTTCTCCAAGTAAATCGGATGGCAACTCAGTTTCTATGGACGAGACAATGTCAACTTGCGATTCTTTTAAGAGTCCGGACATTGAGTACATCGACAACAATGATGTTCCTGCAATTGATTCTATTAACCGGAAGACATTCAGCAACCTCTACATTTCAGACAATGCGGAAACAACAGGGATTGGCTGCAAAAGAGAAGTACTTGCGGAGTTGGAAGATGATAAAGTTGTTGATCTGGATAACAATTTCATGGATCCACAGCTTTGTGCAACATTTGCTTGCGATATTTATAAGCACTTGCGCTCATCTGAGGTGAAGAAAAGGCCTGCCACAGATTTCATGGAGAAAACTCAGAAAGACATCAATCCCAGCATGCGCGCTATACTAATTGATTGGCTTGTGGAGGTGGCTGAAGAATACAGGCTTGTACCTGATACATTATATCTCACTGTGAACTATGTAGATCGATATCTTTCGGGGAATCCAATGAATAGGCAACGATTACAGTTACTCGGTGTTGCCTGTATGATGATTGCATCCAAATATGAAGAGATATGTGCACCGCAGGTGGAAGAATTTTGTTACATTACTGACAACACATATTTCAAAGATGAGGTTTTGCAAATGGAATCCGATGTTTTGAATTACTTGAAGTTTGAAATGACAGCCCCAACAACTAAATGTTTCTTAAGGCGATTCTTGCGTGCTGCTCAAGGGGCCAATGAGGTTACGTCGATGCAGTTGGAGTGCTTAGCAAACTACATTGCGGAATTATCCCTTCTCGAGTACAGCATGCTTTGTTATGCTCCATCACTTATAGCTGCTTCTGCGATTTTCCTGGCCAACTACATACTTCTTCCTTCGAAGAGACCGTGGAATGCCACCTTGCATCATTACACGCTCTACCAGCCATCTGATTTGCTCGACTGCATCAATGCTCTTCATCGCTTGTGTTGCGATAGCCAGACTTCTAGTTTACCTGCTATCAGAGAGAAATACAGTCAGCATAAGTACAAATACGTCGCGAAGCTGCACTGCCCGCCAACAATCCCTTCAAAGTACCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

498

Amino Acids

55.07

Weight (kDa)

7.75

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	236 - 363	7.7e-50	Cyclin, N-terminal domain
Cyclin_C	PF02984	365 - 487	4.2e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AarI	CACCTGC	1 cut(s)	979
Acc36I	ACCTGC	3 cut(s)	412, 979, 1411
Acc65I	GGTACC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	2 cut(s)	801, 1448
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	7 cut(s)	110, 293, 590, 629, 986, 1190, 1463
AclWI	GGATC	3 cut(s)	202, 671, 684
AcoI	YGGCCR	1 cut(s)	1263
AcsI	RAATTY	1 cut(s)	998
AcuI	CTGAAG	1 cut(s)	855
AfaI	GTAC	7 cut(s)	213, 512, 624, 852, 1211, 1436, 1484
AfiI	CCNNNNNNNGG	4 cut(s)	22, 116, 173, 358
AflII	CTTAAG	1 cut(s)	1111
AgsI	TTSAA	5 cut(s)	1030, 1066, 1075, 1082, 1479
AjnI	CCWGG	1 cut(s)	1260
AjuI	GAANNNNNNNTTGG	2 cut(s)	1459, 1491
AluBI	AGCT	6 cut(s)	104, 186, 368, 685, 1244, 1453
AluI	AGCT	6 cut(s)	104, 186, 368, 685, 1244, 1453
Alw21I	GWGCWC	2 cut(s)	188, 985
Alw26I	GTCTC	2 cut(s)	461, 1285
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	3 cut(s)	202, 671, 684
Ama87I	CYCGRG	2 cut(s)	352, 1205
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	3 cut(s)	746, 1140, 1263
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	7 cut(s)	101, 368, 414, 609, 1130, 1244, 1453
ApoI	RAATTY	1 cut(s)	998
Asp700I	GAANNNNTTC	1 cut(s)	560
Asp718I	GGTACC	1 cut(s)	211
AspLEI	GCGC	5 cut(s)	133, 206, 726, 801, 803
AspS9I	GGNCC	2 cut(s)	248, 1140
AsuHPI	GGTGA	1 cut(s)	748
AsuII	TTCGAA	1 cut(s)	1286
AvaI	CYCGRG	2 cut(s)	352, 1205
AvaII	GGWCC	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	985
BalI	TGGCCA	1 cut(s)	1265
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	2 cut(s)	60, 563
Bbv12I	GWGCWC	2 cut(s)	188, 985
BbvI	GCAGC	7 cut(s)	113, 355, 426, 596, 1117, 1231, 1440
BccI	CCATC	4 cut(s)	223, 437, 1240, 1342
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	1262
BcoDI	GTCTC	2 cut(s)	461, 1285
BfaI	CTAG	3 cut(s)	375, 387, 1395
BfrI	CTTAAG	1 cut(s)	1111
BfuAI	ACCTGC	3 cut(s)	412, 979, 1411
BisI	GCNGC	8 cut(s)	102, 110, 369, 415, 610, 1131, 1245, 1454
BlpI	GCTNAGC	2 cut(s)	105, 1174
BlsI	GCNGC	8 cut(s)	103, 111, 370, 416, 611, 1132, 1246, 1455
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	1 cut(s)	1262
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	2 cut(s)	352, 1205
BmgT120I	GGNCC	2 cut(s)	248, 1140
BmiI	GGNNCC	4 cut(s)	213, 249, 678, 1141
BmrFI	CCNGG	1 cut(s)	1262
BmsI	GCATC	5 cut(s)	83, 968, 1149, 1321, 1362
BpiI	GAAGAC	2 cut(s)	60, 563
Bpu10I	CCTNAGC	1 cut(s)	187
Bpu1102I	GCTNAGC	2 cut(s)	105, 1174
Bpu14I	TTCGAA	1 cut(s)	1286
BpuEI	CTTGAG	1 cut(s)	1119
Bsa29I	ATCGAT	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	891
BsaI	GGTCTC	1 cut(s)	1285
BsaJI	CCNNGG	2 cut(s)	39, 1295
BsaWI	WCCGGW	2 cut(s)	499, 552
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 116, 173, 358
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	385, 1185
Bse8I	GATNNNNATC	1 cut(s)	891
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	1262
BseCI	ATCGAT	1 cut(s)	889
BseDI	CCNNGG	2 cut(s)	39, 1295
BseGI	GGATG	5 cut(s)	35, 215, 427, 448, 959
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	4 cut(s)	22, 116, 173, 358
BseMI	GCAATG	2 cut(s)	385, 1185
BseMII	CTCAG	5 cut(s)	96, 201, 465, 723, 788
BseNI	ACTGG	1 cut(s)	268
BsePI	GCGCGC	1 cut(s)	799
BseSI	GKGCMC	1 cut(s)	985
BseXI	GCAGC	7 cut(s)	113, 355, 426, 596, 1117, 1231, 1440
BseYI	CCCAGC	1 cut(s)	791
BsgI	GTGCAG	2 cut(s)	433, 1439
Bsh1236I	CGCG	2 cut(s)	801, 1448
BshFI	GGCC	3 cut(s)	748, 1142, 1265
BshNI	GGYRCC	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	889
BsiHKAI	GWGCWC	2 cut(s)	188, 985
BsiHKCI	CYCGRG	2 cut(s)	352, 1205
BsiSI	CCGG	2 cut(s)	500, 553
BslFI	GGGAC	2 cut(s)	261, 368
BslI	CCNNNNNNNGG	4 cut(s)	22, 116, 173, 358
BsmAI	GTCTC	2 cut(s)	461, 1285
BsmFI	GGGAC	2 cut(s)	261, 368
BsmI	GAATGC	1 cut(s)	1306
BsnI	GGCC	3 cut(s)	748, 1142, 1265
Bso31I	GGTCTC	1 cut(s)	1285
BsoBI	CYCGRG	2 cut(s)	352, 1205
Bsp119I	TTCGAA	1 cut(s)	1286
Bsp1286I	GDGCHC	2 cut(s)	188, 985
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	4 cut(s)	194, 655, 676, 886
Bsp1720I	GCTNAGC	2 cut(s)	105, 1174
Bsp68I	TCGCGA	1 cut(s)	1448
BspACI	CCGC	7 cut(s)	110, 293, 590, 629, 986, 1190, 1463
BspANI	GGCC	3 cut(s)	748, 1142, 1265
BspCNI	CTCAG	5 cut(s)	97, 200, 464, 724, 787
BspDI	ATCGAT	1 cut(s)	889
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	2 cut(s)	801, 1448
BspLI	GGNNCC	4 cut(s)	213, 249, 678, 1141
BspMI	ACCTGC	3 cut(s)	412, 979, 1411
BspPI	GGATC	3 cut(s)	202, 671, 684
BspQI	GCTCTTC	1 cut(s)	1368
BspT104I	TTCGAA	1 cut(s)	1286
BspT107I	GGYRCC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	1111
BspTNI	GGTCTC	1 cut(s)	1285
BsrDI	GCAATG	2 cut(s)	385, 1185
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	39, 1295
BssHII	GCGCGC	1 cut(s)	799
BssMI	GATC	4 cut(s)	194, 655, 676, 886
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	1262
Bst4CI	ACNGT	6 cut(s)	17, 161, 874, 930, 1296, 1424
Bst6I	CTCTTC	3 cut(s)	966, 1283, 1368
BstAFI	CTTAAG	1 cut(s)	1111
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	1286
BstDEI	CTNAG	7 cut(s)	105, 137, 187, 451, 732, 774, 1174
BstDSI	CCRYGG	1 cut(s)	1295
BstF5I	GGATG	5 cut(s)	35, 215, 427, 448, 959
BstFNI	CGCG	2 cut(s)	801, 1448
BstHHI	GCGC	5 cut(s)	133, 206, 726, 801, 803
BstKTI	GATC	4 cut(s)	197, 658, 679, 889
BstMAI	GTCTC	2 cut(s)	461, 1285
BstMBI	GATC	4 cut(s)	194, 655, 676, 886
BstMWI	GCNNNNNNNGC	9 cut(s)	101, 404, 698, 1123, 1139, 1250, 1330, 1377, 1462
BstNI	CCWGG	1 cut(s)	1262
BstNSI	RCATGY	2 cut(s)	799, 1219
BstSCI	CCNGG	1 cut(s)	1260
BstSLI	GKGCMC	1 cut(s)	985
BstUI	CGCG	2 cut(s)	801, 1448
BstV1I	GCAGC	7 cut(s)	113, 355, 426, 596, 1117, 1231, 1440
BstV2I	GAAGAC	2 cut(s)	60, 563
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
Bsu15I	ATCGAT	1 cut(s)	889
BsuRI	GGCC	3 cut(s)	748, 1142, 1265
BsuTUI	ATCGAT	1 cut(s)	889
BtgI	CCRYGG	1 cut(s)	1295
BtgZI	GCGATG	1 cut(s)	1352
BtsCI	GGATG	5 cut(s)	35, 215, 427, 448, 959
BtsI	GCAGTG	1 cut(s)	1456
BtsIMutI	CAGTG	4 cut(s)	166, 261, 870, 1456
BtuMI	TCGCGA	1 cut(s)	1448
BveI	ACCTGC	3 cut(s)	412, 979, 1411
CfoI	GCGC	5 cut(s)	133, 206, 726, 801, 803
Cfr13I	GGNCC	2 cut(s)	248, 1140
ClaI	ATCGAT	1 cut(s)	889
Csp6I	GTAC	7 cut(s)	212, 511, 623, 851, 1210, 1435, 1483
CviAII	CATG	5 cut(s)	418, 673, 763, 796, 1216
CviQI	GTAC	7 cut(s)	212, 511, 623, 851, 1210, 1435, 1483
DdeI	CTNAG	7 cut(s)	105, 137, 187, 451, 732, 774, 1174
DpnI	GATC	4 cut(s)	196, 657, 678, 888
DpnII	GATC	4 cut(s)	194, 655, 676, 886
EaeI	YGGCCR	1 cut(s)	1263
Eam1104I	CTCTTC	3 cut(s)	966, 1283, 1368
EarI	CTCTTC	3 cut(s)	966, 1283, 1368
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	748
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	1285
Eco32I	GATATC	1 cut(s)	893
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	855
Eco88I	CYCGRG	2 cut(s)	352, 1205
EcoICRI	GAGCTC	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	1260
EcoRV	GATATC	1 cut(s)	893
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	5 cut(s)	421, 676, 766, 799, 1219
FaqI	GGGAC	2 cut(s)	261, 368
FatI	CATG	5 cut(s)	417, 672, 762, 795, 1215
FauI	CCCGC	2 cut(s)	300, 1470
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	8 cut(s)	102, 110, 369, 415, 610, 1131, 1245, 1454
FokI	GGATG	5 cut(s)	22, 202, 434, 455, 946
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	8 cut(s)	102, 110, 369, 415, 610, 1131, 1245, 1454
FspBI	CTAG	3 cut(s)	375, 387, 1395
GlaI	GCGC	5 cut(s)	132, 205, 725, 800, 802
GluI	GCNGC	8 cut(s)	102, 110, 369, 415, 610, 1131, 1245, 1454
GsaI	CCCAGC	1 cut(s)	795
HaeIII	GGCC	3 cut(s)	748, 1142, 1265
HapII	CCGG	2 cut(s)	500, 553
HhaI	GCGC	5 cut(s)	133, 206, 726, 801, 803
Hin1II	CATG	5 cut(s)	421, 676, 766, 799, 1219
Hin6I	GCGC	5 cut(s)	131, 204, 724, 799, 801
HinP1I	GCGC	5 cut(s)	131, 204, 724, 799, 801
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	6 cut(s)	485, 496, 542, 904, 1052, 1119
HpaII	CCGG	2 cut(s)	500, 553
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	5 cut(s)	179, 477, 877, 983, 1400
Hpy188I	TCNGA	7 cut(s)	442, 583, 733, 777, 1057, 1339, 1412
Hpy188III	TCNNGA	5 cut(s)	189, 500, 659, 1205, 1447
Hpy8I	GTNNAC	5 cut(s)	179, 477, 877, 983, 1400
Hpy99I	CGWCG	3 cut(s)	21, 1159, 1448
HpyAV	CCTTC	6 cut(s)	85, 313, 351, 1211, 1293, 1485
HpyCH4III	ACNGT	6 cut(s)	17, 161, 874, 930, 1296, 1424
HpyCH4IV	ACGT	2 cut(s)	1154, 1443
HpyF10VI	GCNNNNNNNGC	9 cut(s)	101, 404, 698, 1123, 1139, 1250, 1330, 1377, 1462
HpyF3I	CTNAG	7 cut(s)	105, 137, 187, 451, 732, 774, 1174
HpySE526I	ACGT	2 cut(s)	1154, 1443
Hsp92II	CATG	5 cut(s)	421, 676, 766, 799, 1219
HspAI	GCGC	5 cut(s)	131, 204, 724, 799, 801
Kpn2I	TCCGGA	1 cut(s)	499
KpnI	GGTACC	1 cut(s)	215
Kzo9I	GATC	4 cut(s)	194, 655, 676, 886
LguI	GCTCTTC	1 cut(s)	1368
LmnI	GCTCC	3 cut(s)	183, 376, 1234
Lsp1109I	GCAGC	7 cut(s)	113, 355, 426, 596, 1117, 1231, 1440
LweI	GCATC	5 cut(s)	83, 968, 1149, 1321, 1362
MaeI	CTAG	3 cut(s)	375, 387, 1395
MaeII	ACGT	2 cut(s)	1154, 1443
MaeIII	GTNAC	6 cut(s)	140, 287, 340, 930, 1004, 1150
MalI	GATC	4 cut(s)	196, 657, 678, 888
MboI	GATC	4 cut(s)	194, 655, 676, 886
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	2 cut(s)	188, 985
MlsI	TGGCCA	1 cut(s)	1265
MluCI	AATT	6 cut(s)	537, 667, 810, 998, 1066, 1193
MluNI	TGGCCA	1 cut(s)	1265
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	615, 1146
Mox20I	TGGCCA	1 cut(s)	1265
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	1265
MseI	TTAA	5 cut(s)	312, 492, 549, 1112, 1492
Msp20I	TGGCCA	1 cut(s)	1265
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	1111
MspI	CCGG	2 cut(s)	500, 553
MspR9I	CCNGG	1 cut(s)	1262
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	1306
MvaI	CCWGG	1 cut(s)	1262
MvnI	CGCG	2 cut(s)	801, 1448
MwoI	GCNNNNNNNGC	9 cut(s)	101, 404, 698, 1123, 1139, 1250, 1330, 1377, 1462
NdeII	GATC	4 cut(s)	194, 655, 676, 886
NlaIII	CATG	5 cut(s)	421, 676, 766, 799, 1219
NlaIV	GGNNCC	4 cut(s)	213, 249, 678, 1141
NruI	TCGCGA	1 cut(s)	1448
NspI	RCATGY	2 cut(s)	799, 1219
NspV	TTCGAA	1 cut(s)	1286
PaeI	GCATGC	2 cut(s)	799, 1219
PaeR7I	CTCGAG	1 cut(s)	1205
PaqCI	CACCTGC	1 cut(s)	979
PauI	GCGCGC	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	748
PciSI	GCTCTTC	1 cut(s)	1368
PcsI	WCGNNNNNNNCGW	1 cut(s)	1292
PctI	GAATGC	1 cut(s)	1306
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	5 cut(s)	485, 542, 904, 1052, 1119
PflFI	GACNNNGTC	1 cut(s)	472
PkrI	GCNGC	8 cut(s)	103, 111, 370, 416, 611, 1132, 1246, 1455
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PpuMI	RGGWCCY	1 cut(s)	248
PsiI	TTATAA	1 cut(s)	714
Psp124BI	GAGCTC	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	1260
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	1260
PspN4I	GGNNCC	4 cut(s)	213, 249, 678, 1141
PspPI	GGNCC	2 cut(s)	248, 1140
PspPPI	RGGWCCY	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	676
PsyI	GACNNNGTC	1 cut(s)	472
PteI	GCGCGC	1 cut(s)	799
PvuII	CAGCTG	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	1448
RsaI	GTAC	7 cut(s)	213, 512, 624, 852, 1211, 1436, 1484
RsaNI	GTAC	7 cut(s)	212, 511, 623, 851, 1210, 1435, 1483
SacI	GAGCTC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	1368
SaqAI	TTAA	5 cut(s)	312, 492, 549, 1112, 1492
SatI	GCNGC	8 cut(s)	102, 110, 369, 415, 610, 1131, 1245, 1454
Sau3AI	GATC	4 cut(s)	194, 655, 676, 886
Sau96I	GGNCC	2 cut(s)	248, 1140
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	1262
SduI	GDGCHC	2 cut(s)	188, 985
SfaNI	GCATC	5 cut(s)	83, 968, 1149, 1321, 1362
Sfr274I	CTCGAG	1 cut(s)	1205
SfuI	TTCGAA	1 cut(s)	1286
SinI	GGWCC	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	1205
SmlI	CTYRAG	3 cut(s)	1111, 1134, 1205
SmoI	CTYRAG	3 cut(s)	1111, 1134, 1205
SphI	GCATGC	2 cut(s)	799, 1219
Sse9I	AATT	6 cut(s)	537, 667, 810, 998, 1066, 1193
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	7 cut(s)	110, 293, 590, 629, 986, 1190, 1463
SspMI	CTAG	3 cut(s)	375, 387, 1395
SstI	GAGCTC	1 cut(s)	188
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	1 cut(s)	1260
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	6 cut(s)	17, 161, 874, 930, 1296, 1424
TaiI	ACGT	2 cut(s)	1157, 1446
TaqI	TCGA	7 cut(s)	5, 516, 889, 1157, 1206, 1286, 1347
TasI	AATT	6 cut(s)	537, 667, 810, 998, 1066, 1193
TatI	WGTACW	4 cut(s)	510, 622, 1209, 1434
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	5 cut(s)	485, 542, 904, 1052, 1119
Tru1I	TTAA	5 cut(s)	312, 492, 549, 1112, 1492
Tru9I	TTAA	5 cut(s)	312, 492, 549, 1112, 1492
TscAI	CASTG	4 cut(s)	166, 268, 877, 1463
TseI	GCWGC	7 cut(s)	101, 368, 414, 609, 1130, 1244, 1453
TspDTI	ATGAA	5 cut(s)	661, 751, 926, 984, 1355
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	4 cut(s)	166, 268, 877, 1463
Tth111I	GACNNNGTC	1 cut(s)	472
Vha464I	CTTAAG	1 cut(s)	1111
VneI	GTGCAC	1 cut(s)	981
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	998
XceI	RCATGY	2 cut(s)	799, 1219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XhoI	CTCGAG	1 cut(s)	1205
XmiI	GTMKAC	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	3 cut(s)	375, 387, 1395
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.