Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001536

Physical Location & Seq

Genomic Coordinates Reverse (-)

5055434 .. 5056333

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTGAACGAAACAACAGCCATTGTCTGCAATAGGGAACTACTTGTGGATATTGCTGATATTGATAACAGCTTCATGGATCCGCAGCTTTGTGCAACCTTTGCTTGTGACATTTACAACCACTTGCGTGCATCCGAGGTCAAGAAAAGACCTTCCACAGATTATATGGAAAAAATTCAGAAAAAAATAAATCCAAGCATGCGTGCATTACTAATCGATTGGCTTGTGGAGGTAGCCGAAGGCTACAGCTTTGTACCTGAGACATTGTATTTGGCTGTGAACTACATAGATCGATATCTTTCGGGGAATCCTATCGATGGAGAACGATTGATGTTACTTGGTATTGTCTGCTTGATGCTTGCATCGAAATATGAAGATATGTGGACACCCTCGGTTGAAACGTTCTGTGACCTTGCTGATAACATTTATCTCGAAGAAGAGGTCTTAGAAATGGAATCTTCTGTGTTGAGTTACTTGAAGTACGAAATGACAGCCGTAACAACTAAATCTTTCTTGAGCCGATTTGTTCGAGCTGCTCGAGGGGCCAATCATGAGCTTCCCTCATTGCATTTGGAGTGCTTAGCGAAGTACCTTGCAGAACTATCTCTTCTAGATTACAGTATGCTTTGTTATGCTCCATCACTTATAGCTGCCTCTGCGATTTTCCTGGCCAATTACATAATGCTACCTTCAAAGAAGCCATGGAATGCTACCTTGAAGCATTACACCCTTTACCATCCTTCAGATTTGCCCGACTGCGTCAAGGATCTCCATCGTCTATGTTACGATAATCCAAGTTCTGGTTTACCTGCCATTAGAGAGAAATATAGTGAACATGAGTACAAGTGTGTTGCCGAGAAGCACTGCCCAGCAACAATCCCTACAGAGTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

300

Amino Acids

34.11

Weight (kDa)

5.02

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	37 - 164	1.9e-42	Cyclin, N-terminal domain
Cyclin_C	PF02984	166 - 289	2.9e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44110
fragaria_vesca	FvH4_1g09410 FvH4_2g27580 FvH4_2g27580 FvH4_2g27590
malus_domestica	MD00G1156900.v1.1 MD15G1344200.v1.1 MD15G1344300.v1.1
prunus_persica	Prupe.1G491700_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1 Prupe.1G491800_v2.0.a1
pyrus_communis	pycom116g00040 pycom15g30740 pycom15g30750
rosa_chinensis	RchiOBHm_Chr2g0095961 RchiOBHm_Chr6g0296421 RchiOBHm_Chr6g0296431
rosa_laevigata	RLG00000011694 RLG00000011695 RLG00000016611
rosa_multiflora	Rmu_sc0002497.1_g000006 Rmu_sc0004084.1_g000046 Rmu_sc0004487.1_g000017 Rmu_sc0008096.1_g000016 Rmu_sc0019394.1_g000001 Rmu_sc0033856.1_g000002 Rmu_sc0034769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145910 Rroxscaffold_7G00171540 Rroxscaffold_7G00171550 Rroxscaffold_7G00178580 Rroxscaffold_7G00178590
rosa_rugosa	Rorug02G0055400 Rorug06G0262300 Rorug06G0262400 Rorug06G0262400 Rorug06G0262400
rosa_samantha	Rh2AG103400 Rh2BG104800 Rh2CG107400 Rh2DG105100 Rh6AG373400 Rh6AG373500 Rh6BG382100 Rh6BG382200 Rh6CG386900 Rh6DG374600
rosa_wichuraiana	Rw2G007870 Rw6G032580 Rw6G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	817
AccB7I	CCANNNNNTGG	1 cut(s)	800
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	401
AclWI	GGATC	3 cut(s)	74, 87, 774
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	5 cut(s)	255, 482, 590, 842, 890
AfiI	CCNNNNNNNGG	2 cut(s)	317, 800
AgsI	TTSAA	5 cut(s)	7, 398, 478, 693, 718
AjnI	CCWGG	1 cut(s)	666
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	6 cut(s)	72, 88, 249, 533, 556, 650
AluI	AGCT	6 cut(s)	72, 88, 249, 533, 556, 650
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	74, 87, 774
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	2 cut(s)	543, 669
ApeKI	GCWGC	3 cut(s)	85, 533, 650
ApoI	RAATTY	1 cut(s)	174
ArsI	GACNNNNNNTTYG	4 cut(s)	253, 285, 426, 458
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	543
AvaI	CYCGRG	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	97, 520, 637
BccI	CCATC	4 cut(s)	311, 646, 744, 780
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	2 cut(s)	244, 882
BfuAI	ACCTGC	1 cut(s)	817
BisI	GCNGC	3 cut(s)	86, 534, 651
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	3 cut(s)	87, 535, 652
Bme1390I	CCNGG	1 cut(s)	668
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	543
BmiI	GGNNCC	2 cut(s)	81, 544
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	3 cut(s)	140, 345, 371
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
Bpu1102I	GCTNAGC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	535
Bsa29I	ATCGAT	3 cut(s)	216, 292, 315
BsaBI	GATNNNNATC	2 cut(s)	294, 771
BsaJI	CCNNGG	3 cut(s)	135, 390, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 800
Bse3DI	GCAATG	1 cut(s)	563
Bse8I	GATNNNNATC	2 cut(s)	294, 771
BseBI	CCWGG	1 cut(s)	668
BseCI	ATCGAT	3 cut(s)	216, 292, 315
BseDI	CCNNGG	3 cut(s)	135, 390, 701
BseGI	GGATG	2 cut(s)	131, 736
BseJI	GATNNNNATC	2 cut(s)	294, 771
BseLI	CCNNNNNNNGG	2 cut(s)	317, 800
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	97, 520, 637
BseYI	CCCAGC	1 cut(s)	868
BshFI	GGCC	2 cut(s)	545, 671
BshVI	ATCGAT	3 cut(s)	216, 292, 315
BsiHKCI	CYCGRG	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	317, 800
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	545, 671
BsoBI	CYCGRG	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	79, 289, 766
Bsp1720I	GCTNAGC	1 cut(s)	580
Bsp19I	CCATGG	1 cut(s)	701
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	545, 671
BspCNI	CTCAG	1 cut(s)	250
BspDI	ATCGAT	3 cut(s)	216, 292, 315
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	81, 544
BspMI	ACCTGC	1 cut(s)	817
BspPI	GGATC	3 cut(s)	74, 87, 774
BsrDI	GCAATG	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	135, 390, 701
BssMI	GATC	3 cut(s)	79, 289, 766
BssT1I	CCWWGG	1 cut(s)	701
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	2 cut(s)	432, 612
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	4 cut(s)	129, 200, 204, 360
BstDEI	CTNAG	3 cut(s)	258, 445, 580
BstDSI	CCRYGG	1 cut(s)	701
BstF5I	GGATG	2 cut(s)	131, 736
BstKTI	GATC	3 cut(s)	82, 292, 769
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	79, 289, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 542, 656
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	244, 882
BstV1I	GCAGC	3 cut(s)	97, 520, 637
BstX2I	RGATCY	2 cut(s)	79, 766
BstYI	RGATCY	2 cut(s)	79, 766
Bsu15I	ATCGAT	3 cut(s)	216, 292, 315
BsuRI	GGCC	2 cut(s)	545, 671
BsuTUI	ATCGAT	3 cut(s)	216, 292, 315
BtgI	CCRYGG	1 cut(s)	701
BtsCI	GGATG	2 cut(s)	131, 736
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	862
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	4 cut(s)	129, 200, 204, 360
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	543
ClaI	ATCGAT	3 cut(s)	216, 292, 315
CseI	GACGC	1 cut(s)	748
Csp6I	GTAC	5 cut(s)	254, 481, 589, 841, 889
CviAII	CATG	5 cut(s)	76, 199, 551, 702, 836
CviQI	GTAC	5 cut(s)	254, 481, 589, 841, 889
DdeI	CTNAG	3 cut(s)	258, 445, 580
DpnI	GATC	3 cut(s)	81, 291, 768
DpnII	GATC	3 cut(s)	79, 289, 766
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	2 cut(s)	432, 612
EarI	CTCTTC	2 cut(s)	432, 612
Eco130I	CCWWGG	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	666
EcoRV	GATATC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	701
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	5 cut(s)	79, 202, 554, 705, 839
FatI	CATG	5 cut(s)	75, 198, 550, 701, 835
Fnu4HI	GCNGC	3 cut(s)	86, 534, 651
FokI	GGATG	2 cut(s)	118, 723
Fsp4HI	GCNGC	3 cut(s)	86, 534, 651
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	3 cut(s)	86, 534, 651
GsaI	CCCAGC	1 cut(s)	872
HaeIII	GGCC	2 cut(s)	545, 671
HgaI	GACGC	1 cut(s)	748
Hin1II	CATG	5 cut(s)	79, 202, 554, 705, 839
HinfI	GANTC	2 cut(s)	307, 455
Hpy166II	GTNNAC	4 cut(s)	280, 384, 806, 833
Hpy188I	TCNGA	3 cut(s)	136, 180, 745
Hpy188III	TCNNGA	5 cut(s)	142, 431, 514, 551, 611
Hpy8I	GTNNAC	4 cut(s)	280, 384, 806, 833
HpyAV	CCTTC	4 cut(s)	162, 233, 699, 750
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	7 cut(s)	30, 95, 131, 206, 362, 568, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 542, 656
HpyF3I	CTNAG	3 cut(s)	258, 445, 580
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	5 cut(s)	79, 202, 554, 705, 839
Kzo9I	GATC	3 cut(s)	79, 289, 766
LmnI	GCTCC	1 cut(s)	640
LpnPI	CCDG	6 cut(s)	270, 653, 680, 786, 822, 882
Lsp1109I	GCAGC	3 cut(s)	97, 520, 637
LweI	GCATC	3 cut(s)	140, 345, 371
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	6 cut(s)	107, 333, 407, 470, 496, 782
MalI	GATC	3 cut(s)	81, 291, 768
MboI	GATC	3 cut(s)	79, 289, 766
MboII	GAAGA	5 cut(s)	386, 446, 449, 450, 599
MflI	RGATCY	2 cut(s)	79, 766
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	2 cut(s)	174, 673
MluNI	TGGCCA	1 cut(s)	671
MnlI	CCTC	7 cut(s)	130, 223, 400, 433, 533, 571, 664
Mox20I	TGGCCA	1 cut(s)	671
MroXI	GAANNNNTTC	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	671
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	3 cut(s)	101, 542, 656
NcoI	CCATGG	1 cut(s)	701
NdeII	GATC	3 cut(s)	79, 289, 766
NlaIII	CATG	5 cut(s)	79, 202, 554, 705, 839
NlaIV	GGNNCC	2 cut(s)	81, 544
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	2 cut(s)	107, 407
NspI	RCATGY	1 cut(s)	202
OliI	CACNNNNGTG	1 cut(s)	126
PaeI	GCATGC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	537
PagI	TCATGA	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	2 cut(s)	398, 535
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	307, 455
PflFI	GACNNNGTC	1 cut(s)	758
PflMI	CCANNNNNTGG	1 cut(s)	800
PkrI	GCNGC	3 cut(s)	87, 535, 652
Psp1406I	AACGTT	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	868
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	2 cut(s)	81, 544
PspPI	GGNCC	1 cut(s)	543
PspXI	VCTCGAGB	1 cut(s)	537
PsuI	RGATCY	2 cut(s)	79, 766
PsyI	GACNNNGTC	1 cut(s)	758
RsaI	GTAC	5 cut(s)	255, 482, 590, 842, 890
RsaNI	GTAC	5 cut(s)	254, 481, 589, 841, 889
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	3 cut(s)	86, 534, 651
Sau3AI	GATC	3 cut(s)	79, 289, 766
Sau96I	GGNCC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	668
SfaNI	GCATC	3 cut(s)	140, 345, 371
SfcI	CTRYAG	2 cut(s)	244, 882
Sfr274I	CTCGAG	1 cut(s)	537
SlaI	CTCGAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	514, 537
SmoI	CTYRAG	2 cut(s)	514, 537
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	174, 673
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	666
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	7 cut(s)	216, 292, 315, 365, 432, 529, 538
TasI	AATT	2 cut(s)	174, 673
TatI	WGTACW	1 cut(s)	840
TfiI	GAWTC	2 cut(s)	307, 455
TscAI	CASTG	1 cut(s)	869
TseFI	GTSAC	2 cut(s)	107, 407
TseI	GCWGC	3 cut(s)	85, 533, 650
Tsp45I	GTSAC	2 cut(s)	107, 407
TspDTI	ATGAA	2 cut(s)	64, 387
TspRI	CASTG	1 cut(s)	869
Tth111I	GACNNNGTC	1 cut(s)	758
Van91I	CCANNNNNTGG	1 cut(s)	800
XapI	RAATTY	1 cut(s)	174
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.