AT1G45688

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003196
Physical Location & Seq
Forward (+)
17191362 .. 17193314
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G45688.2

Sequence Viewer

Length: 1029 bp
ATGCACGCCAAAACCGATTCCGAGGTAACAAGCCTCGCAGCATCATCACCAGCCAGATCTCCACGTAGACCAGTCTACTACGTCCAATCACCATCACGCGACTCTCACGACGGAGAAAAAACAGCAACATCGTTTCACTCAACTCCAGTACTAAGTCCGATGGGATCTCCACCGCATTCTCACTCATCTATGGGTCGTCACTCACGTGAATCATCTTCTAGTCGATTCTCTGGCTCTTTAAAGCCTGGATCTAGAAAAGTCAACCCTAACGATGGTTCTAAACGGAAAGGTCACGGCGGTGAGAAACAGTGGAAAGAATGTGCGGTTATTGAAGAAGAAGGTTTGTTAGATGATGGTGATAGAGACGGTGGTGTTCCTCGTCGTTGCTATGTTTTGGCTTTTATCGTTGGATTCTTTATTCTCTTTGGTTTCTTCTCTTTGATTCTCTATGGTGCTGCTAAACCTATGAAACCTAAGATCACTGTCAAGAGTATAACATTTGAGACGCTTAAGATCCAAGCTGGTCAAGATGCTGGTGGTGTAGGAACTGATATGATCACTATGAACGCGACTTTGAGAATGTTGTATCGAAACACTGGAACTTTCTTTGGTGTTCATGTTACTTCAACTCCTATTGATCTCAGCTTCTCTCAAATCAAAATCGGTTCCGGATCCGTTAAGAAATTTTATCAGGGAAGGAAGAGTGAGAGAACAGTGTTGGTGCATGTGATCGGAGAGAAGATTCCATTATATGGAAGTGGTTCGACTTTACTTCCACCGGCTCCTCCAGCACCACTTCCTAAACCCAAGAAGAAGAAAGGAGCTCCAGTCCCTATTCCCGACCCGCCCGCACCACCAGCACCGGTACCAATGACGCTCAGCTTTGTCGTCCGATCACGAGCATACGTGTTGGGGAAGTTAGTGCAGCCAAAGTTCTATAAGAAAATCGAGTGTGACATCAACTTCGAACACAAGAATCTTAATAAGCATATAGTCATCACCAAGAATTGCACCGTCACTACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

342

Amino Acids

37.2

Weight (kDa)

9.9

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 865
AccB7I CCANNNNNTGG 1 cut(s) 752
AccI GTMKAC 2 cut(s) 67, 75
AccII CGCG 2 cut(s) 99, 569
AccIII TCCGGA 1 cut(s) 668
AciI CCGC 5 cut(s) 173, 297, 323, 845, 849
AclWI GGATC 5 cut(s) 172, 256, 508, 666, 679
AcsI RAATTY 1 cut(s) 683
AcvI CACGTG 1 cut(s) 206
AfaI GTAC 2 cut(s) 150, 867
AfiI CCNNNNNNNGG 2 cut(s) 272, 752
AflII CTTAAG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 906
AgeI ACCGGT 1 cut(s) 862
AgsI TTSAA 2 cut(s) 332, 627
AjnI CCWGG 1 cut(s) 244
AleI CACNNNNGTG 2 cut(s) 204, 297
AluBI AGCT 4 cut(s) 521, 645, 824, 882
AluI AGCT 4 cut(s) 521, 645, 824, 882
Alw21I GWGCWC 1 cut(s) 826
Alw26I GTCTC 2 cut(s) 357, 497
AlwI GGATC 5 cut(s) 172, 256, 508, 666, 679
Aor13HI TCCGGA 1 cut(s) 668
ApeKI GCWGC 3 cut(s) 38, 455, 925
ApoI RAATTY 1 cut(s) 683
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AsiGI ACCGGT 1 cut(s) 862
Asp700I GAANNNNTTC 1 cut(s) 760
Asp718I GGTACC 1 cut(s) 865
AsuHPI GGTGA 5 cut(s) 39, 81, 311, 368, 991
AsuII TTCGAA 1 cut(s) 966
BamHI GGATCC 1 cut(s) 671
BanI GGYRCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 826
BauI CACGAG 1 cut(s) 897
BbrPI CACGTG 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 826
BbvI GCAGC 3 cut(s) 50, 442, 937
BccI CCATC 4 cut(s) 100, 154, 266, 347
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 555
BcoDI GTCTC 2 cut(s) 357, 497
BfaI CTAG 2 cut(s) 219, 252
BfmI CTRYAG 1 cut(s) 1020
BfrI CTTAAG 1 cut(s) 509
BglII AGATCT 1 cut(s) 56
BisI GCNGC 3 cut(s) 39, 456, 926
BlpI GCTNAGC 1 cut(s) 878
BlsI GCNGC 3 cut(s) 40, 457, 927
BmcAI AGTACT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 4 cut(s) 667, 673, 783, 867
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 50, 520
BpmI CTGGAG 3 cut(s) 129, 771, 810
Bpu1102I GCTNAGC 1 cut(s) 878
Bpu14I TTCGAA 1 cut(s) 966
BsaAI YACGTR 3 cut(s) 65, 206, 907
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 2 cut(s) 668, 862
BsaXI ACNNNNNCTCC 4 cut(s) 613, 643, 813, 843
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 752
Bse118I RCCGGY 2 cut(s) 778, 862
Bse1I ACTGG 4 cut(s) 71, 146, 601, 827
BseAI TCCGGA 1 cut(s) 668
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 272, 752
BseMII CTCAG 2 cut(s) 655, 892
BseNI ACTGG 4 cut(s) 71, 146, 601, 827
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 3 cut(s) 50, 442, 937
BsgI GTGCAG 1 cut(s) 944
Bsh1236I CGCG 2 cut(s) 99, 569
BshNI GGYRCC 1 cut(s) 865
BshTI ACCGGT 1 cut(s) 862
BsiHKAI GWGCWC 1 cut(s) 826
BsiSI CCGG 3 cut(s) 669, 779, 863
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 2 cut(s) 272, 752
BsmAI GTCTC 2 cut(s) 357, 497
BsmBI CGTCTC 2 cut(s) 357, 497
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 175
Bsp119I TTCGAA 1 cut(s) 966
Bsp1286I GDGCHC 1 cut(s) 826
Bsp13I TCCGGA 1 cut(s) 668
Bsp1720I GCTNAGC 1 cut(s) 878
BspACI CCGC 5 cut(s) 173, 297, 323, 845, 849
BspCNI CTCAG 2 cut(s) 654, 891
BspEI TCCGGA 1 cut(s) 668
BspFNI CGCG 2 cut(s) 99, 569
BspLI GGNNCC 4 cut(s) 667, 673, 783, 867
BspPI GGATC 5 cut(s) 172, 256, 508, 666, 679
BspT104I TTCGAA 1 cut(s) 966
BspT107I GGYRCC 1 cut(s) 865
BspTI CTTAAG 1 cut(s) 509
BsrFI RCCGGY 2 cut(s) 778, 862
BsrI ACTGG 4 cut(s) 71, 146, 601, 827
BssAI RCCGGY 2 cut(s) 778, 862
BssECI CCNNGG 1 cut(s) 21
BssSI CACGAG 1 cut(s) 897
Bst2BI CACGAG 1 cut(s) 897
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 6 cut(s) 309, 368, 484, 715, 1015, 1024
Bst6I CTCTTC 1 cut(s) 695
BstAFI CTTAAG 1 cut(s) 509
BstBAI YACGTR 3 cut(s) 65, 206, 907
BstBI TTCGAA 1 cut(s) 966
BstC8I GCNNGC 2 cut(s) 6, 849
BstDEI CTNAG 4 cut(s) 152, 474, 641, 878
BstFNI CGCG 2 cut(s) 99, 569
BstMAI GTCTC 2 cut(s) 357, 497
BstMWI GCNNNNNNNGC 2 cut(s) 788, 857
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 1020
BstUI CGCG 2 cut(s) 99, 569
BstV1I GCAGC 3 cut(s) 50, 442, 937
BstX2I RGATCY 5 cut(s) 56, 164, 248, 513, 671
BstYI RGATCY 5 cut(s) 56, 164, 248, 513, 671
BtsIMutI CAGTG 4 cut(s) 314, 480, 594, 720
Cac8I GCNNGC 2 cut(s) 6, 849
Cfr10I RCCGGY 2 cut(s) 778, 862
CseI GACGC 2 cut(s) 514, 883
Csp6I GTAC 2 cut(s) 149, 866
CspAI ACCGGT 1 cut(s) 862
CviAII CATG 2 cut(s) 617, 725
CviQI GTAC 2 cut(s) 149, 866
DdeI CTNAG 4 cut(s) 152, 474, 641, 878
DraI TTTAAA 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 695
EarI CTCTTC 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 826
Eco53kI GAGCTC 1 cut(s) 824
Eco72I CACGTG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 826
Esp3I CGTCTC 2 cut(s) 357, 497
FaeI CATG 2 cut(s) 620, 728
FaqI GGGAC 1 cut(s) 815
FatI CATG 2 cut(s) 616, 724
FauI CCCGC 2 cut(s) 852, 856
FbaI TGATCA 1 cut(s) 555
FblI GTMKAC 2 cut(s) 67, 75
Fnu4HI GCNGC 3 cut(s) 39, 456, 926
FriOI GRGCYC 1 cut(s) 826
Fsp4HI GCNGC 3 cut(s) 39, 456, 926
FspBI CTAG 2 cut(s) 219, 252
GluI GCNGC 3 cut(s) 39, 456, 926
GsuI CTGGAG 3 cut(s) 129, 771, 810
HapII CCGG 3 cut(s) 669, 779, 863
HgaI GACGC 2 cut(s) 514, 883
Hin1II CATG 2 cut(s) 620, 728
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 8 cut(s) 17, 101, 209, 225, 411, 442, 742, 976
HpaII CCGG 3 cut(s) 669, 779, 863
HphI GGTGA 5 cut(s) 39, 81, 311, 368, 991
Hpy166II GTNNAC 3 cut(s) 68, 76, 262
Hpy188I TCNGA 4 cut(s) 22, 159, 734, 893
Hpy188III TCNNGA 7 cut(s) 107, 252, 487, 527, 669, 839, 897
Hpy8I GTNNAC 3 cut(s) 68, 76, 262
Hpy99I CGWCG 2 cut(s) 113, 384
HpyAV CCTTC 2 cut(s) 332, 690
HpyCH4III ACNGT 6 cut(s) 309, 368, 484, 715, 1015, 1024
HpyCH4IV ACGT 4 cut(s) 64, 81, 205, 906
HpyCH4V TGCA 4 cut(s) 4, 724, 925, 1011
HpyF10VI GCNNNNNNNGC 2 cut(s) 788, 857
HpyF3I CTNAG 4 cut(s) 152, 474, 641, 878
HpySE526I ACGT 4 cut(s) 64, 81, 205, 906
Hsp92II CATG 2 cut(s) 620, 728
Kpn2I TCCGGA 1 cut(s) 668
KpnI GGTACC 1 cut(s) 869
Ksp22I TGATCA 1 cut(s) 555
LmnI GCTCC 3 cut(s) 787, 821, 829
Lsp1109I GCAGC 3 cut(s) 50, 442, 937
LweI GCATC 2 cut(s) 50, 520
MaeI CTAG 2 cut(s) 219, 252
MaeII ACGT 4 cut(s) 64, 81, 205, 906
MaeIII GTNAC 6 cut(s) 25, 197, 290, 619, 953, 1015
MboII GAAGA 8 cut(s) 207, 344, 347, 424, 712, 751, 823, 826
MflI RGATCY 5 cut(s) 56, 164, 248, 513, 671
MhlI GDGCHC 1 cut(s) 826
MluCI AATT 2 cut(s) 683, 1006
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 4 cut(s) 16, 44, 387, 795
MroI TCCGGA 1 cut(s) 668
MroXI GAANNNNTTC 1 cut(s) 760
MseI TTAA 4 cut(s) 239, 510, 678, 981
MslI CAYNNNNRTG 2 cut(s) 204, 297
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 3 cut(s) 669, 779, 863
MspR9I CCNGG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 2 cut(s) 99, 569
MwoI GCNNNNNNNGC 2 cut(s) 788, 857
NlaIII CATG 2 cut(s) 620, 728
NlaIV GGNNCC 4 cut(s) 667, 673, 783, 867
NmuCI GTSAC 4 cut(s) 197, 290, 953, 1015
NspI RCATGY 1 cut(s) 728
NspV TTCGAA 1 cut(s) 966
OliI CACNNNNGTG 2 cut(s) 204, 297
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 202
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 760
PfeI GAWTC 7 cut(s) 17, 209, 225, 411, 442, 742, 976
PflMI CCANNNNNTGG 1 cut(s) 752
PinAI ACCGGT 1 cut(s) 862
PkrI GCNGC 3 cut(s) 40, 457, 927
PleI GAGTC 1 cut(s) 95
PmaCI CACGTG 1 cut(s) 206
PmlI CACGTG 1 cut(s) 206
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 3 cut(s) 65, 206, 907
Psp124BI GAGCTC 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 244
PspCI CACGTG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 4 cut(s) 667, 673, 783, 867
PsuI RGATCY 5 cut(s) 56, 164, 248, 513, 671
RsaI GTAC 2 cut(s) 150, 867
RsaNI GTAC 2 cut(s) 149, 866
RseI CAYNNNNRTG 2 cut(s) 204, 297
SacI GAGCTC 1 cut(s) 826
SaqAI TTAA 4 cut(s) 239, 510, 678, 981
SatI GCNGC 3 cut(s) 39, 456, 926
ScaI AGTACT 1 cut(s) 150
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 826
SfaNI GCATC 2 cut(s) 50, 520
SfcI CTRYAG 1 cut(s) 1020
SfuI TTCGAA 1 cut(s) 966
SmiMI CAYNNNNRTG 2 cut(s) 204, 297
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 2 cut(s) 683, 1006
SsiI CCGC 5 cut(s) 173, 297, 323, 845, 849
SspMI CTAG 2 cut(s) 219, 252
SstI GAGCTC 1 cut(s) 826
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 6 cut(s) 309, 368, 484, 715, 1015, 1024
TaiI ACGT 4 cut(s) 67, 84, 208, 909
TaqI TCGA 5 cut(s) 223, 589, 764, 948, 966
TasI AATT 2 cut(s) 683, 1006
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 7 cut(s) 17, 209, 225, 411, 442, 742, 976
Tru1I TTAA 4 cut(s) 239, 510, 678, 981
Tru9I TTAA 4 cut(s) 239, 510, 678, 981
TscAI CASTG 4 cut(s) 314, 487, 601, 720
TseFI GTSAC 4 cut(s) 197, 290, 953, 1015
TseI GCWGC 3 cut(s) 38, 455, 925
Tsp45I GTSAC 4 cut(s) 197, 290, 953, 1015
TspDTI ATGAA 3 cut(s) 482, 578, 605
TspGWI ACGGA 3 cut(s) 126, 298, 664
TspRI CASTG 4 cut(s) 314, 487, 601, 720
Van91I CCANNNNNTGG 1 cut(s) 752
Vha464I CTTAAG 1 cut(s) 509
XapI RAATTY 1 cut(s) 683
XbaI TCTAGA 1 cut(s) 251
XceI RCATGY 1 cut(s) 728
XmiI GTMKAC 2 cut(s) 67, 75
XmnI GAANNNNTTC 1 cut(s) 760
XspI CTAG 2 cut(s) 219, 252
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.