Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

4638292 .. 4639024

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCACGCCAAGACAGACTCCGAGGTGACAAGCCTCGCGCCGTCGTCCCCCACCAGATCCCCAGGCCGCCGCCCCGTCTACTACGTCCAGAGCCCCTCGCGCGACTCCCACGATGGAGAAAAGACCGCCACGTCGTTTCAGTCCACCCCTGTCATCAGCCCCTCCGGCTCCCCTCCCCACTCCCACTCCTCAGTCGGCCGCCACTCCCGCGAGTCCTCCTCCACACGGTTCTCCGGGTCACTCAAACCCGGATCCCGAAAGATCAACCCCAATGACGGGTCCCGCCACCACCGGAAAGGTCAGAAGCCGTGGAAGGAGCAAGCCGTCATTGAAGAAGAAGGCCTTCTGGAGGGAGAAGAGCGATCCAAAGGCTTCCCGCGGCGGTGCTACTTCCCGGCTTTCGTTCTCGGCTTCTTCCTCCTCTTCACCATGTTCGCTCTGATTCTCTGGGGCGCCAGTAAGCCCATGAAGCCCAAGATCACCATGAAGAGCGTGACGTTCGAACAGTTCAAGATTCAAGCGGGTTCGGATTCCACCGGCGTCTCCACTGATATGATCGATCAGTCAATTCCACAGTCAAGTTCACATTTCGCAACACCGGCACGTTCTTCGGAATGCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

208

Amino Acids

22.75

Weight (kDa)

9.69

Isoelectric Point (pI)

78.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	5 cut(s)	38, 100, 102, 210, 379
AclWI	GGATC	4 cut(s)	51, 246, 259, 357
AcoI	YGGCCR	1 cut(s)	196
AcyI	GRCGYC	2 cut(s)	453, 540
AfiI	CCNNNNNNNGG	4 cut(s)	225, 275, 276, 349
AgsI	TTSAA	3 cut(s)	332, 511, 518
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	4 cut(s)	51, 246, 259, 357
AoxI	GGCC	3 cut(s)	64, 196, 340
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	3 cut(s)	40, 102, 455
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	3 cut(s)	235, 249, 395
AsuHPI	GGTGA	3 cut(s)	37, 418, 472
AsuII	TTCGAA	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	95
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	3 cut(s)	25, 292, 308
BcgI	CGANNNNNNTGC	1 cut(s)	591
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	3 cut(s)	235, 249, 395
BcoDI	GTCTC	1 cut(s)	547
BfoI	RGCGCY	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	165
BisI	GCNGC	4 cut(s)	67, 70, 199, 380
BlsI	GCNGC	4 cut(s)	68, 71, 200, 381
Bme1390I	CCNGG	4 cut(s)	63, 235, 249, 395
Bme18I	GGWCC	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	5 cut(s)	169, 253, 280, 281, 454
BmrFI	CCNGG	4 cut(s)	63, 235, 249, 395
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	501
BpuMI	CCSGG	3 cut(s)	235, 249, 395
Bsa29I	ATCGAT	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	621
BsaHI	GRCGYC	2 cut(s)	453, 540
BsaJI	CCNNGG	4 cut(s)	21, 61, 308, 377
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 275, 276, 349
Bse118I	RCCGGY	2 cut(s)	536, 598
Bse1I	ACTGG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	63
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	4 cut(s)	21, 61, 308, 377
BseLI	CCNNNNNNNGG	4 cut(s)	225, 275, 276, 349
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	3 cut(s)	178, 208, 410
BseX3I	CGGCCG	1 cut(s)	196
Bsh1236I	CGCG	5 cut(s)	38, 100, 102, 210, 379
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	66, 198, 342
BshNI	GGYRCC	1 cut(s)	452
BshVI	ATCGAT	1 cut(s)	558
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	7 cut(s)	165, 234, 249, 292, 395, 537, 599
BslFI	GGGAC	2 cut(s)	31, 265
BslI	CCNNNNNNNGG	4 cut(s)	225, 275, 276, 349
BsmAI	GTCTC	1 cut(s)	547
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	31, 265
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	3 cut(s)	66, 198, 342
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
BspANI	GGCC	3 cut(s)	66, 198, 342
BspCNI	CTCAG	1 cut(s)	203
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	5 cut(s)	38, 100, 102, 210, 379
BspLI	GGNNCC	5 cut(s)	169, 253, 280, 281, 454
BspPI	GGATC	4 cut(s)	51, 246, 259, 357
BspQI	GCTCTTC	2 cut(s)	351, 482
BspT104I	TTCGAA	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	536, 598
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	2 cut(s)	536, 598
BssECI	CCNNGG	4 cut(s)	21, 61, 308, 377
BssMI	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
BssNI	GRCGYC	2 cut(s)	453, 540
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	228, 507, 576
Bst6I	CTCTTC	3 cut(s)	351, 428, 482
BstACI	GRCGYC	2 cut(s)	453, 540
BstBAI	YACGTR	1 cut(s)	621
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	6, 321
BstDEI	CTNAG	1 cut(s)	190
BstDSI	CCRYGG	2 cut(s)	308, 377
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstFNI	CGCG	5 cut(s)	38, 100, 102, 210, 379
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	3 cut(s)	40, 102, 455
BstKTI	GATC	7 cut(s)	59, 254, 264, 365, 480, 558, 562
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 165, 207, 469, 599
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	4 cut(s)	61, 233, 247, 393
BstUI	CGCG	5 cut(s)	38, 100, 102, 210, 379
BstX2I	RGATCY	2 cut(s)	56, 251
BstYI	RGATCY	2 cut(s)	56, 251
BstZI	CGGCCG	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	66, 198, 342
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	2 cut(s)	308, 377
BtrI	CACGTC	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	2 cut(s)	6, 321
CfoI	GCGC	3 cut(s)	40, 102, 455
Cfr10I	RCCGGY	2 cut(s)	536, 598
Cfr13I	GGNCC	1 cut(s)	279
Cfr42I	CCGCGG	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	558
CseI	GACGC	1 cut(s)	529
CviAII	CATG	3 cut(s)	430, 466, 484
DdeI	CTNAG	1 cut(s)	190
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	7 cut(s)	58, 253, 263, 364, 479, 557, 561
DpnII	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	196
EagI	CGGCCG	1 cut(s)	196
Eam1104I	CTCTTC	3 cut(s)	351, 428, 482
EarI	CTCTTC	3 cut(s)	351, 428, 482
EclXI	CGGCCG	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	95
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	3 cut(s)	433, 469, 487
FaiI	YATR	4 cut(s)	431, 467, 485, 554
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	2 cut(s)	31, 265
FatI	CATG	3 cut(s)	429, 465, 483
FauI	CCCGC	4 cut(s)	215, 290, 384, 514
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	4 cut(s)	67, 70, 199, 380
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	4 cut(s)	67, 70, 199, 380
GlaI	GCGC	3 cut(s)	39, 101, 454
GluI	GCNGC	4 cut(s)	67, 70, 199, 380
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	66, 198, 342
HapII	CCGG	7 cut(s)	165, 234, 249, 292, 395, 537, 599
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	3 cut(s)	40, 102, 455
Hin1I	GRCGYC	2 cut(s)	453, 540
Hin1II	CATG	3 cut(s)	433, 469, 487
Hin6I	GCGC	3 cut(s)	38, 100, 453
HinP1I	GCGC	3 cut(s)	38, 100, 453
HinfI	GANTC	6 cut(s)	17, 104, 212, 442, 514, 530
HpaII	CCGG	7 cut(s)	165, 234, 249, 292, 395, 537, 599
HphI	GGTGA	3 cut(s)	37, 418, 472
Hpy166II	GTNNAC	3 cut(s)	79, 144, 584
Hpy188I	TCNGA	5 cut(s)	22, 303, 441, 529, 613
Hpy188III	TCNNGA	4 cut(s)	88, 255, 347, 511
Hpy8I	GTNNAC	3 cut(s)	79, 144, 584
Hpy99I	CGWCG	2 cut(s)	46, 136
HpyAV	CCTTC	3 cut(s)	307, 332, 353
HpyCH4III	ACNGT	3 cut(s)	228, 507, 576
HpyCH4IV	ACGT	5 cut(s)	84, 131, 497, 604, 620
HpyCH4V	TGCA	2 cut(s)	4, 618
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 165, 207, 469, 599
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	5 cut(s)	84, 131, 497, 604, 620
Hsp92I	GRCGYC	2 cut(s)	453, 540
Hsp92II	CATG	3 cut(s)	433, 469, 487
HspAI	GCGC	3 cut(s)	38, 100, 453
KasI	GGCGCC	1 cut(s)	452
KflI	GGGWCCC	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	380
Kzo9I	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
LguI	GCTCTTC	2 cut(s)	351, 482
LmnI	GCTCC	2 cut(s)	173, 316
MaeII	ACGT	5 cut(s)	84, 131, 497, 604, 620
MaeIII	GTNAC	3 cut(s)	25, 237, 493
MalI	GATC	7 cut(s)	58, 253, 263, 364, 479, 557, 561
MboI	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
MboII	GAAGA	7 cut(s)	344, 347, 368, 406, 415, 499, 600
MflI	RGATCY	2 cut(s)	56, 251
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	1 cut(s)	567
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	3 cut(s)	11, 98, 221
MroXI	GAANNNNTTC	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	7 cut(s)	165, 234, 249, 292, 395, 537, 599
MspR9I	CCNGG	4 cut(s)	63, 235, 249, 395
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	5 cut(s)	38, 100, 102, 210, 379
MwoI	GCNNNNNNNGC	5 cut(s)	99, 165, 207, 469, 599
NarI	GGCGCC	1 cut(s)	453
NciI	CCSGG	3 cut(s)	235, 249, 395
NdeII	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
NlaIII	CATG	3 cut(s)	433, 469, 487
NlaIV	GGNNCC	5 cut(s)	169, 253, 280, 281, 454
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	3 cut(s)	25, 237, 493
NspV	TTCGAA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	342
PciSI	GCTCTTC	2 cut(s)	351, 482
PcsI	WCGNNNNNNNCGW	1 cut(s)	617
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	442, 514, 530
PkrI	GCNGC	4 cut(s)	68, 71, 200, 381
PleI	GAGTC	3 cut(s)	11, 98, 220
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	3 cut(s)	11, 98, 220
Ppu21I	YACGTR	1 cut(s)	621
PpuMI	RGGWCCY	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	5 cut(s)	169, 253, 280, 281, 454
PspPI	GGNCC	1 cut(s)	279
PspPPI	RGGWCCY	1 cut(s)	279
PsuI	RGATCY	2 cut(s)	56, 251
RseI	CAYNNNNRTG	1 cut(s)	551
SacII	CCGCGG	1 cut(s)	380
SapI	GCTCTTC	2 cut(s)	351, 482
SatI	GCNGC	4 cut(s)	67, 70, 199, 380
Sau3AI	GATC	7 cut(s)	56, 251, 261, 362, 477, 555, 559
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	3 cut(s)	11, 98, 221
ScrFI	CCNGG	4 cut(s)	63, 235, 249, 395
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	7 cut(s)	27, 87, 134, 301, 500, 607, 623
SfoI	GGCGCC	1 cut(s)	454
Sfr303I	CCGCGG	1 cut(s)	380
SfuI	TTCGAA	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	536
SgrBI	CCGCGG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	551
Sse9I	AATT	1 cut(s)	567
SseBI	AGGCCT	1 cut(s)	342
SspDI	GGCGCC	1 cut(s)	452
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	4 cut(s)	61, 233, 247, 393
TaaI	ACNGT	3 cut(s)	228, 507, 576
TaiI	ACGT	5 cut(s)	87, 134, 500, 607, 623
TaqI	TCGA	2 cut(s)	501, 558
TasI	AATT	1 cut(s)	567
TauI	GCSGC	4 cut(s)	69, 72, 201, 382
TfiI	GAWTC	3 cut(s)	442, 514, 530
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	3 cut(s)	25, 237, 493
Tsp45I	GTSAC	3 cut(s)	25, 237, 493
TspDTI	ATGAA	2 cut(s)	482, 500
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.