Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

15261530 .. 15263100

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1173700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCAGTGTTGGCCAAGACTGACTCCGAGGTGAGCAGCCTCAGCCAGTCCTCTCCGGCGCGCTCACCGCGCCGCGCAGTCTACTACGTCCAGAGTCCATCGCGCGATTCGCATGATGGCGAAAAGACCACCAACTCCTTCAACTCCAGCCCCGTCCGCAGCCCTATGGGCTCACCCCCTCACTCCCACTCCAACTCTTCTCTTGGTCCTCACTCTCGGGAGTCCGCCTCCACTCGTTTCTCCGGCTCCCGCAGCAAGAGCAGCCGCAGTAGCGGTTCCCGCCGCAAGGGTTGGAGGCCATGGAAAGATCAGTTTGGTTCCATTGAAGAAGAAGGGCTTCTCGATGAGGATGGAAACCCTCATGGTCTCACTCGTAGGTGTTACTTCCTTGCTTTTATTGGGGGATTCCTTGTGCTTTTCTCTCTCTTTTCTTTGATACTGTGGGGTGCAAGTCGATCCCAGAAGCCCATCATCACTATGAAGAGCATTCTATTTGATCAATTTGTGGTGCAAGCTGGTGAGGATTTCTCAGGAGTGGCCACCAGCATGGTGTCCATGAATTCCACAGTGAAGCTCACCCTTCGTAACTCTGCTACATTTTTCGGTGTCCATGTGAAATCAACACCTCTGGATCTCTCCTACTCTCAACTCTCTGTAGCCACTGGAACTATAAATAACTTTTACCAGGCGAGAAAGAGTCAGAGATCCATTACAATAACATTAGTAGGAAATAGAATTCCACTGTACGGTGGGGGAGCAAACTTGGGCAGCTTAAATGGTGCACCCACTCAACCAGTGCCGTTCGCACTCAGGTTCACGGTGAGGTCGAGAGCTTATGTTCTGGGAAAATTGGTGAAGCCCAAGTTCTACAAGAAGGTCGAGTGCTCGGTGGTTATGGATTCTAAGAAGATGAATGTGCCCATTGCTTTGAAGAACACATGTAGTTACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

318

Amino Acids

34.7

Weight (kDa)

10.22

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	5 cut(s)	61, 70, 75, 103, 105
AciI	CCGC	9 cut(s)	68, 73, 157, 225, 250, 265, 273, 280, 283
AclWI	GGATC	3 cut(s)	450, 639, 699
AcoI	YGGCCR	2 cut(s)	12, 537
AcsI	RAATTY	2 cut(s)	559, 735
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	2 cut(s)	286, 746
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	3 cut(s)	142, 326, 931
AjnI	CCWGG	1 cut(s)	684
AluBI	AGCT	4 cut(s)	515, 574, 771, 833
AluI	AGCT	4 cut(s)	515, 574, 771, 833
Alw21I	GWGCWC	2 cut(s)	784, 887
Alw26I	GTCTC	1 cut(s)	371
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	450, 639, 699
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	3 cut(s)	12, 296, 537
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	5 cut(s)	36, 159, 252, 261, 768
ApoI	RAATTY	2 cut(s)	559, 735
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	5 cut(s)	61, 63, 72, 77, 105
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	7 cut(s)	43, 57, 165, 530, 568, 832, 865
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	2 cut(s)	784, 921
BalI	TGGCCA	2 cut(s)	14, 539
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	784, 887
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	5 cut(s)	48, 171, 264, 273, 780
BccI	CCATC	4 cut(s)	106, 110, 344, 476
BceAI	ACGGC	1 cut(s)	784
BciT130I	CCWGG	1 cut(s)	686
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	654
BglI	GCCNNNNNGGC	1 cut(s)	168
BisI	GCNGC	8 cut(s)	37, 73, 160, 253, 262, 265, 283, 769
BlsI	GCNGC	8 cut(s)	38, 74, 161, 254, 263, 266, 284, 770
Bme1390I	CCNGG	1 cut(s)	686
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	3 cut(s)	247, 277, 319
BmrFI	CCNGG	1 cut(s)	686
BplI	GAGNNNNNCTC	4 cut(s)	212, 244, 512, 544
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	27, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 746
Bse1I	ACTGG	4 cut(s)	46, 667, 794, 949
Bse3DI	GCAATG	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	2 cut(s)	27, 299
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	286, 746
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	3 cut(s)	55, 543, 823
BseNI	ACTGG	4 cut(s)	46, 667, 794, 949
BsePI	GCGCGC	1 cut(s)	59
BseSI	GKGCMC	2 cut(s)	784, 921
BseXI	GCAGC	5 cut(s)	48, 171, 264, 273, 780
Bsh1236I	CGCG	5 cut(s)	61, 70, 75, 103, 105
BshFI	GGCC	3 cut(s)	14, 298, 539
BsiHKAI	GWGCWC	2 cut(s)	784, 887
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	56, 243
BslI	CCNNNNNNNGG	2 cut(s)	286, 746
BsmAI	GTCTC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	3 cut(s)	14, 298, 539
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	4 cut(s)	173, 784, 887, 921
Bsp143I	GATC	5 cut(s)	307, 455, 496, 631, 704
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	9 cut(s)	68, 73, 157, 225, 250, 265, 273, 280, 283
BspANI	GGCC	3 cut(s)	14, 298, 539
BspCNI	CTCAG	3 cut(s)	54, 542, 822
BspFNI	CGCG	5 cut(s)	61, 70, 75, 103, 105
BspLI	GGNNCC	3 cut(s)	247, 277, 319
BspPI	GGATC	3 cut(s)	450, 639, 699
BspQI	GCTCTTC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	4 cut(s)	46, 667, 794, 949
BssECI	CCNNGG	2 cut(s)	27, 299
BssHII	GCGCGC	1 cut(s)	59
BssMI	GATC	5 cut(s)	307, 455, 496, 631, 704
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	5 cut(s)	441, 568, 744, 749, 820
Bst6I	CTCTTC	2 cut(s)	202, 476
BstC8I	GCNNGC	2 cut(s)	61, 513
BstDEI	CTNAG	4 cut(s)	41, 529, 809, 903
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	5 cut(s)	61, 70, 75, 103, 105
BstHHI	GCGC	5 cut(s)	61, 63, 72, 77, 105
BstKTI	GATC	5 cut(s)	310, 458, 499, 634, 707
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	5 cut(s)	307, 455, 496, 631, 704
BstNI	CCWGG	1 cut(s)	686
BstNSI	RCATGY	1 cut(s)	942
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	2 cut(s)	784, 921
BstUI	CGCG	5 cut(s)	61, 70, 75, 103, 105
BstV1I	GCAGC	5 cut(s)	48, 171, 264, 273, 780
BstX2I	RGATCY	2 cut(s)	631, 704
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	2 cut(s)	631, 704
BsuRI	GGCC	3 cut(s)	14, 298, 539
BtgI	CCRYGG	1 cut(s)	299
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	5 cut(s)	12, 573, 660, 740, 801
Cac8I	GCNNGC	2 cut(s)	61, 513
CfoI	GCGC	5 cut(s)	61, 63, 72, 77, 105
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	7 cut(s)	113, 300, 362, 547, 556, 611, 939
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	4 cut(s)	41, 529, 809, 903
DpnI	GATC	5 cut(s)	309, 457, 498, 633, 706
DpnII	GATC	5 cut(s)	307, 455, 496, 631, 704
EaeI	YGGCCR	2 cut(s)	12, 537
Eam1104I	CTCTTC	2 cut(s)	202, 476
EarI	CTCTTC	2 cut(s)	202, 476
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	216
EcoRI	GAATTC	2 cut(s)	559, 735
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	7 cut(s)	116, 303, 365, 550, 559, 614, 942
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	7 cut(s)	112, 299, 361, 546, 555, 610, 938
FauI	CCCGC	2 cut(s)	257, 287
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	8 cut(s)	37, 73, 160, 253, 262, 265, 283, 769
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	8 cut(s)	37, 73, 160, 253, 262, 265, 283, 769
GlaI	GCGC	5 cut(s)	60, 62, 71, 76, 104
GluI	GCNGC	8 cut(s)	37, 73, 160, 253, 262, 265, 283, 769
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	14, 298, 539
HapII	CCGG	2 cut(s)	56, 243
HhaI	GCGC	5 cut(s)	61, 63, 72, 77, 105
Hin1II	CATG	7 cut(s)	116, 303, 365, 550, 559, 614, 942
Hin6I	GCGC	5 cut(s)	59, 61, 70, 75, 103
HinP1I	GCGC	5 cut(s)	59, 61, 70, 75, 103
HinfI	GANTC	7 cut(s)	23, 94, 107, 221, 405, 697, 899
HpaII	CCGG	2 cut(s)	56, 243
HphI	GGTGA	7 cut(s)	43, 57, 165, 530, 568, 832, 865
Hpy166II	GTNNAC	3 cut(s)	82, 782, 816
Hpy188I	TCNGA	2 cut(s)	28, 702
Hpy188III	TCNNGA	6 cut(s)	91, 218, 341, 531, 629, 828
Hpy8I	GTNNAC	3 cut(s)	82, 782, 816
HpyAV	CCTTC	4 cut(s)	148, 326, 590, 868
HpyCH4III	ACNGT	5 cut(s)	441, 568, 744, 749, 820
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	449, 511, 782
HpyF3I	CTNAG	4 cut(s)	41, 529, 809, 903
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	7 cut(s)	116, 303, 365, 550, 559, 614, 942
HspAI	GCGC	5 cut(s)	59, 61, 70, 75, 103
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	307, 455, 496, 631, 704
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	2 cut(s)	251, 755
Lsp1109I	GCAGC	5 cut(s)	48, 171, 264, 273, 780
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	380, 584, 944
MalI	GATC	5 cut(s)	309, 457, 498, 633, 706
MboI	GATC	5 cut(s)	307, 455, 496, 631, 704
MboII	GAAGA	6 cut(s)	189, 338, 341, 493, 919, 943
MflI	RGATCY	2 cut(s)	631, 704
MhlI	GDGCHC	4 cut(s)	173, 784, 887, 921
MlsI	TGGCCA	2 cut(s)	14, 539
MluCI	AATT	4 cut(s)	500, 559, 735, 848
MluNI	TGGCCA	2 cut(s)	14, 539
MlyI	GAGTC	4 cut(s)	17, 103, 230, 706
MmeI	TCCRAC	2 cut(s)	216, 272
Mox20I	TGGCCA	2 cut(s)	14, 539
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	2 cut(s)	14, 539
MseI	TTAA	1 cut(s)	773
MslI	CAYNNNNRTG	2 cut(s)	476, 545
Msp20I	TGGCCA	2 cut(s)	14, 539
MspI	CCGG	2 cut(s)	56, 243
MspR9I	CCNGG	1 cut(s)	686
MteI	GCGCNGCGC	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	686
MvnI	CGCG	5 cut(s)	61, 70, 75, 103, 105
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	5 cut(s)	307, 455, 496, 631, 704
NlaIII	CATG	7 cut(s)	116, 303, 365, 550, 559, 614, 942
NlaIV	GGNNCC	3 cut(s)	247, 277, 319
NspI	RCATGY	1 cut(s)	942
PauI	GCGCGC	1 cut(s)	59
PciI	ACATGT	1 cut(s)	938
PciSI	GCTCTTC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	824
PctI	GAATGC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	107, 405, 899
PkrI	GCNGC	8 cut(s)	38, 74, 161, 254, 263, 266, 284, 770
PleI	GAGTC	4 cut(s)	17, 102, 229, 705
PpsI	GAGTC	4 cut(s)	17, 102, 229, 705
PscI	ACATGT	1 cut(s)	938
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	3 cut(s)	247, 277, 319
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	631, 704
PteI	GCGCGC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	2 cut(s)	476, 545
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	8 cut(s)	37, 73, 160, 253, 262, 265, 283, 769
Sau3AI	GATC	5 cut(s)	307, 455, 496, 631, 704
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	4 cut(s)	17, 103, 230, 706
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	4 cut(s)	173, 784, 887, 921
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	2 cut(s)	476, 545
Sse9I	AATT	4 cut(s)	500, 559, 735, 848
SsiI	CCGC	9 cut(s)	68, 73, 157, 225, 250, 265, 273, 280, 283
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	5 cut(s)	441, 568, 744, 749, 820
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	4 cut(s)	342, 454, 827, 879
TasI	AATT	4 cut(s)	500, 559, 735, 848
TauI	GCSGC	3 cut(s)	75, 267, 285
TfiI	GAWTC	3 cut(s)	107, 405, 899
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	5 cut(s)	12, 573, 667, 747, 801
TseI	GCWGC	5 cut(s)	36, 159, 252, 261, 768
TspDTI	ATGAA	3 cut(s)	494, 572, 926
TspRI	CASTG	5 cut(s)	12, 573, 667, 747, 801
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	559, 735
XceI	RCATGY	1 cut(s)	942
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.