pycom08g08020

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
6471651 .. 6472799
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08020.3

Sequence Viewer

Length: 957 bp
ATGCACGCCAAGACCGACTCCGAGGTGACCAGCCTCGCGCCGTCGTCACCCACCAGATCCCCAGGCCGCCGCCCAGTCTACTACGTCCAGAGCCCCTCGCGCGACTCCCACGATGGAGAGAAAACCACGACGTCTTTTCAGTCCACCCCTGTCATCAGTCCCTCCGGCTCCCCTCCCCACTCCCACTCCTCCATCGGCCGCCACTCCCGCGAGTCCTCGTCCACCCGGTTCTCCGGGTCCCTCAAATCCGGATCCCGAAAGATCAACCCCAATGACGGGTCCCGCCAGAACCGGAAGGGACAGAAGCCGTGGAAGGAGCAAGCCGTCATCGAAGAGGAAGGCCTTCTGGAGGGAGAAGAGGGATCCAAAGGCTTCCCACGGCGGTGCTACTTTCCAGCTTTCGTTCTCGGTTTCTTCCTCCTCTTCTCCATGTTCGCTCTGATTCTCTGGGGCGCCAGTAGGCCCATGAAGCCCAAGATCACCATGAAGAGTGTGACGTTCGAACAGTTCAAGATTCAAGCGGGTTCGGATTCCACCGGCGTTTCCACTGATATGATCTCAGTCAATTCCACAGTGAAGTTCACATTCCGCAACACCGGCACGTTCTTCGGAATGCACGTAATGCCGAAGCCTCTAGATCTATCATACTTCCAAATCACAATCGCCTCCGGTCCAATTAAAAATTTTTATCAATCGAGGAAGAGTCAAAGATCGATCAGCGTTCGGGTATTTGGCGATAAAATACCGCTGTACGGTAGCGGCGCGAGCATGAACAGCGTGACGGGGACGACGGCGCTGCCGGTGCCGCTGCAGCTGAGCTTCGTGATCCGATCCAGAGCCTACGTTTTGGGGAAGTTGGTGAAGCCGAAATTCAACCGACGGGTTGATTGTTCTGTGACTTTTGATCCCAAGAAGCTCAACGTTCCGATCAAGCTCACGAACTGCACCACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

319

Amino Acids

35.08

Weight (kDa)

10.23

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AccB1I GGYRCC 2 cut(s) 452, 802
AccI GTMKAC 1 cut(s) 78
AccII CGCG 5 cut(s) 38, 100, 102, 210, 764
AccIII TCCGGA 1 cut(s) 248
AclI AACGTT 1 cut(s) 921
AclWI GGATC 8 cut(s) 51, 246, 259, 357, 370, 820, 825, 899
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 682, 869
AcyI GRCGYC 2 cut(s) 131, 453
AfaI GTAC 1 cut(s) 752
AfiI CCNNNNNNNGG 4 cut(s) 275, 276, 349, 752
AgsI TTSAA 3 cut(s) 511, 518, 874
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 382
AluBI AGCT 5 cut(s) 398, 814, 819, 916, 934
AluI AGCT 5 cut(s) 398, 814, 819, 916, 934
AlwI GGATC 8 cut(s) 51, 246, 259, 357, 370, 820, 825, 899
Aor13HI TCCGGA 1 cut(s) 248
AoxI GGCC 4 cut(s) 64, 196, 340, 461
ApeKI GCWGC 3 cut(s) 796, 808, 811
ApoI RAATTY 2 cut(s) 682, 869
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 5 cut(s) 40, 102, 455, 764, 796
AspS9I GGNCC 4 cut(s) 237, 279, 462, 671
AsuC2I CCSGG 2 cut(s) 226, 235
AsuHPI GGTGA 4 cut(s) 37, 39, 472, 871
AsuII TTCGAA 1 cut(s) 501
AvaII GGWCC 3 cut(s) 237, 279, 671
BamHI GGATCC 2 cut(s) 251, 362
BanI GGYRCC 2 cut(s) 452, 802
BanII GRGCYC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 783, 795, 823
BccI CCATC 2 cut(s) 107, 200
BceAI ACGGC 5 cut(s) 25, 292, 308, 395, 807
BcgI CGANNNNNNTGC 4 cut(s) 589, 623, 778, 812
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 2 cut(s) 226, 235
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 2 cut(s) 635, 951
BfmI CTRYAG 1 cut(s) 809
BfoI RGCGCY 2 cut(s) 456, 797
BglII AGATCT 1 cut(s) 637
BisI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
BlpI GCTNAGC 1 cut(s) 815
BlsI GCNGC 8 cut(s) 68, 71, 200, 761, 798, 807, 810, 813
Bme1390I CCNGG 3 cut(s) 63, 226, 235
Bme18I GGWCC 3 cut(s) 237, 279, 671
BmgT120I GGNCC 4 cut(s) 237, 279, 462, 671
BmiI GGNNCC 9 cut(s) 169, 238, 239, 253, 280, 281, 364, 454, 804
BmrFI CCNGG 3 cut(s) 63, 226, 235
BmrI ACTGGG 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 815
Bpu14I TTCGAA 1 cut(s) 501
BpuMI CCSGG 2 cut(s) 226, 235
Bsa29I ATCGAT 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 619
BsaHI GRCGYC 2 cut(s) 131, 453
BsaJI CCNNGG 4 cut(s) 21, 61, 308, 377
BsaWI WCCGGW 3 cut(s) 248, 291, 668
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 276, 349, 752
Bse118I RCCGGY 3 cut(s) 536, 596, 799
Bse1I ACTGG 2 cut(s) 74, 456
BseAI TCCGGA 1 cut(s) 248
BseBI CCWGG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 713
BseDI CCNNGG 4 cut(s) 21, 61, 308, 377
BseLI CCNNNNNNNGG 4 cut(s) 275, 276, 349, 752
BseMII CTCAG 2 cut(s) 573, 806
BseNI ACTGG 2 cut(s) 74, 456
BseRI GAGGAG 2 cut(s) 178, 410
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 783, 795, 823
BsgI GTGCAG 1 cut(s) 928
Bsh1236I CGCG 5 cut(s) 38, 100, 102, 210, 764
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 4 cut(s) 66, 198, 342, 463
BshNI GGYRCC 2 cut(s) 452, 802
BshVI ATCGAT 1 cut(s) 713
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 9 cut(s) 165, 226, 234, 249, 292, 537, 597, 669, 800
BslFI GGGAC 5 cut(s) 144, 223, 265, 312, 799
BslI CCNNNNNNNGG 4 cut(s) 275, 276, 349, 752
BsmFI GGGAC 5 cut(s) 144, 223, 265, 312, 799
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 4 cut(s) 66, 198, 342, 463
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 95
Bsp13I TCCGGA 1 cut(s) 248
Bsp1720I GCTNAGC 1 cut(s) 815
BspANI GGCC 4 cut(s) 66, 198, 342, 463
BspCNI CTCAG 2 cut(s) 572, 807
BspDI ATCGAT 1 cut(s) 713
BspEI TCCGGA 1 cut(s) 248
BspFNI CGCG 5 cut(s) 38, 100, 102, 210, 764
BspLI GGNNCC 9 cut(s) 169, 238, 239, 253, 280, 281, 364, 454, 804
BspMAI CTGCAG 1 cut(s) 813
BspPI GGATC 8 cut(s) 51, 246, 259, 357, 370, 820, 825, 899
BspT104I TTCGAA 1 cut(s) 501
BspT107I GGYRCC 2 cut(s) 452, 802
BsrFI RCCGGY 3 cut(s) 536, 596, 799
BsrI ACTGG 2 cut(s) 74, 456
BssAI RCCGGY 3 cut(s) 536, 596, 799
BssECI CCNNGG 4 cut(s) 21, 61, 308, 377
BssNI GRCGYC 2 cut(s) 131, 453
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 507, 574, 755
Bst6I CTCTTC 5 cut(s) 327, 351, 428, 482, 695
BstACI GRCGYC 2 cut(s) 131, 453
BstAPI GCANNNNNTGC 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 619
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 6, 321, 766
BstDEI CTNAG 2 cut(s) 559, 815
BstDSI CCRYGG 2 cut(s) 308, 377
BstEII GGTNACC 1 cut(s) 25
BstENI CCTNNNNNAGG 1 cut(s) 347
BstFNI CGCG 5 cut(s) 38, 100, 102, 210, 764
BstH2I RGCGCY 2 cut(s) 456, 797
BstHHI GCGC 5 cut(s) 40, 102, 455, 764, 796
BstMCI CGRYCG 1 cut(s) 199
BstNI CCWGG 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 3 cut(s) 61, 224, 233
BstSFI CTRYAG 1 cut(s) 809
BstUI CGCG 5 cut(s) 38, 100, 102, 210, 764
BstV1I GCAGC 3 cut(s) 783, 795, 823
BstX2I RGATCY 4 cut(s) 56, 251, 362, 637
BstYI RGATCY 4 cut(s) 56, 251, 362, 637
BstZI CGGCCG 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 713
BsuRI GGCC 4 cut(s) 66, 198, 342, 463
BsuTUI ATCGAT 1 cut(s) 713
BtgI CCRYGG 2 cut(s) 308, 377
BtsIMutI CAGTG 2 cut(s) 546, 579
Cac8I GCNNGC 3 cut(s) 6, 321, 766
CfoI GCGC 5 cut(s) 40, 102, 455, 764, 796
Cfr10I RCCGGY 3 cut(s) 536, 596, 799
Cfr13I GGNCC 4 cut(s) 237, 279, 462, 671
ClaI ATCGAT 1 cut(s) 713
Csp6I GTAC 1 cut(s) 751
CviAII CATG 4 cut(s) 430, 466, 484, 769
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 2 cut(s) 559, 815
DinI GGCGCC 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 196
EagI CGGCCG 1 cut(s) 196
Eam1104I CTCTTC 5 cut(s) 327, 351, 428, 482, 695
EarI CTCTTC 5 cut(s) 327, 351, 428, 482, 695
EclXI CGGCCG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 3 cut(s) 237, 279, 671
Eco52I CGGCCG 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 2 cut(s) 237, 279
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 95
EgeI GGCGCC 1 cut(s) 454
EheI GGCGCC 1 cut(s) 454
FaeI CATG 4 cut(s) 433, 469, 487, 772
FaiI YATR 6 cut(s) 431, 467, 485, 554, 646, 770
FaqI GGGAC 5 cut(s) 144, 223, 265, 312, 799
FatI CATG 4 cut(s) 429, 465, 483, 768
FauI CCCGC 3 cut(s) 215, 290, 514
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
FspBI CTAG 2 cut(s) 635, 951
GlaI GCGC 5 cut(s) 39, 101, 454, 763, 795
GluI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 2 cut(s) 456, 797
HaeIII GGCC 4 cut(s) 66, 198, 342, 463
HapII CCGG 9 cut(s) 165, 226, 234, 249, 292, 537, 597, 669, 800
HhaI GCGC 5 cut(s) 40, 102, 455, 764, 796
Hin1I GRCGYC 2 cut(s) 131, 453
Hin1II CATG 4 cut(s) 433, 469, 487, 772
Hin6I GCGC 5 cut(s) 38, 100, 453, 762, 794
HinP1I GCGC 5 cut(s) 38, 100, 453, 762, 794
HinfI GANTC 7 cut(s) 17, 104, 212, 442, 514, 530, 703
HpaII CCGG 9 cut(s) 165, 226, 234, 249, 292, 537, 597, 669, 800
HphI GGTGA 4 cut(s) 37, 39, 472, 871
Hpy166II GTNNAC 4 cut(s) 79, 144, 222, 582
Hpy188I TCNGA 6 cut(s) 22, 441, 529, 611, 830, 927
Hpy188III TCNNGA 9 cut(s) 88, 249, 255, 347, 511, 635, 823, 834, 937
Hpy8I GTNNAC 4 cut(s) 79, 144, 222, 582
Hpy99I CGWCG 4 cut(s) 46, 133, 793, 882
HpyAV CCTTC 4 cut(s) 289, 307, 332, 353
HpyCH4III ACNGT 3 cut(s) 507, 574, 755
HpyCH4IV ACGT 7 cut(s) 84, 131, 497, 602, 618, 843, 921
HpyCH4V TGCA 4 cut(s) 4, 616, 811, 945
HpyF3I CTNAG 2 cut(s) 559, 815
HpySE526I ACGT 7 cut(s) 84, 131, 497, 602, 618, 843, 921
Hsp92I GRCGYC 2 cut(s) 131, 453
Hsp92II CATG 4 cut(s) 433, 469, 487, 772
HspAI GCGC 5 cut(s) 38, 100, 453, 762, 794
KasI GGCGCC 1 cut(s) 452
KflI GGGWCCC 2 cut(s) 237, 279
Kpn2I TCCGGA 1 cut(s) 248
LmnI GCTCC 2 cut(s) 173, 316
Lsp1109I GCAGC 3 cut(s) 783, 795, 823
MaeI CTAG 2 cut(s) 635, 951
MaeII ACGT 7 cut(s) 84, 131, 497, 602, 618, 843, 921
MaeIII GTNAC 5 cut(s) 25, 45, 493, 778, 895
MboII GAAGA 7 cut(s) 344, 368, 406, 415, 499, 598, 712
MflI RGATCY 4 cut(s) 56, 251, 362, 637
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 4 cut(s) 565, 675, 682, 869
Mly113I GGCGCC 1 cut(s) 453
MlyI GAGTC 4 cut(s) 11, 98, 221, 712
MroI TCCGGA 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 2 cut(s) 382, 551
MspA1I CMGCKG 3 cut(s) 748, 808, 814
MspI CCGG 9 cut(s) 165, 226, 234, 249, 292, 537, 597, 669, 800
MspR9I CCNGG 3 cut(s) 63, 226, 235
Mva1269I GAATGC 1 cut(s) 618
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 5 cut(s) 38, 100, 102, 210, 764
NarI GGCGCC 1 cut(s) 453
NciI CCSGG 2 cut(s) 226, 235
NlaIII CATG 4 cut(s) 433, 469, 487, 772
NlaIV GGNNCC 9 cut(s) 169, 238, 239, 253, 280, 281, 364, 454, 804
NmuCI GTSAC 5 cut(s) 25, 45, 493, 778, 895
NspV TTCGAA 1 cut(s) 501
OliI CACNNNNGTG 1 cut(s) 382
PceI AGGCCT 1 cut(s) 342
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 615
PctI GAATGC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 3 cut(s) 442, 514, 530
PkrI GCNGC 8 cut(s) 68, 71, 200, 761, 798, 807, 810, 813
PleI GAGTC 4 cut(s) 11, 98, 220, 711
PluTI GGCGCC 1 cut(s) 456
PpsI GAGTC 4 cut(s) 11, 98, 220, 711
Ppu21I YACGTR 1 cut(s) 619
PpuMI RGGWCCY 2 cut(s) 237, 279
Psp1406I AACGTT 1 cut(s) 921
Psp5II RGGWCCY 2 cut(s) 237, 279
Psp6I CCWGG 1 cut(s) 61
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 9 cut(s) 169, 238, 239, 253, 280, 281, 364, 454, 804
PspPI GGNCC 4 cut(s) 237, 279, 462, 671
PspPPI RGGWCCY 2 cut(s) 237, 279
PstI CTGCAG 1 cut(s) 813
PsuI RGATCY 4 cut(s) 56, 251, 362, 637
PvuII CAGCTG 1 cut(s) 814
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
RseI CAYNNNNRTG 2 cut(s) 382, 551
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
Sau96I GGNCC 4 cut(s) 237, 279, 462, 671
SchI GAGTC 4 cut(s) 11, 98, 221, 712
ScrFI CCNGG 3 cut(s) 63, 226, 235
SduI GDGCHC 1 cut(s) 95
SfcI CTRYAG 1 cut(s) 809
SfoI GGCGCC 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 501
SgrAI CRCCGGYG 1 cut(s) 536
SinI GGWCC 3 cut(s) 237, 279, 671
SmiMI CAYNNNNRTG 2 cut(s) 382, 551
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 4 cut(s) 565, 675, 682, 869
SseBI AGGCCT 1 cut(s) 342
SspDI GGCGCC 1 cut(s) 452
SspMI CTAG 2 cut(s) 635, 951
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 61, 224, 233
TaaI ACNGT 3 cut(s) 507, 574, 755
TaiI ACGT 7 cut(s) 87, 134, 500, 605, 621, 846, 924
TaqI TCGA 4 cut(s) 330, 501, 695, 713
TaqII GACCGA 1 cut(s) 29
TasI AATT 4 cut(s) 565, 675, 682, 869
TauI GCSGC 5 cut(s) 69, 72, 201, 762, 808
TfiI GAWTC 3 cut(s) 442, 514, 530
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 2 cut(s) 553, 579
TseFI GTSAC 5 cut(s) 25, 45, 493, 778, 895
TseI GCWGC 3 cut(s) 796, 808, 811
Tsp45I GTSAC 5 cut(s) 25, 45, 493, 778, 895
TspDTI ATGAA 3 cut(s) 482, 500, 785
TspRI CASTG 2 cut(s) 553, 579
VpaK11BI GGWCC 3 cut(s) 237, 279, 671
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 2 cut(s) 682, 869
XbaI TCTAGA 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 635, 951
ZraI GACGTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.