Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

17247943 .. 17264203

Gene Structure 16261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG191700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCGGTGCTGGCCAAGACTGACTCCGAGGCGAGCAGCCTCAGCCACTCCTCACCGCCGCGCTCGCCTCGCAGGAGCAGCGAGCGCGGTGCAGTTTATTACGTGCAGAGCCCCTCACGGGACTCGCATGATGGCGAGAAGACCACCAACTCCTTCCACTCCAGCCCGATGGGCTCGCCGCCTCACTCCCACTCCAACTCCTCCCTCGGCCCCCACTCGCGCGAATCCGCCTCCACCCGGTTTTCTGGCTCGCGGAGCAGCAAGCAAAACAGTGGACCCCAGCGCAAGGGGTGGAGGCCGTGGAAGGATCAGTTCGACTCCATTGAAGAAGAGGGCCTGCTCGACGATGACAACGAAAGCGATGGTCTCTCTCGCCGGTGTTACTTTCTCGCTTTCATTTTAGGCTTCTTTGCGCTATTTACTCTGTTCTCTTTGATTCTGTGGGGTGCGAGTAGGGCACAGAAGCCCGTTATCACTATGAAGAGCATCAGATTTGATCAATTTGTGGTTCAAGCCGGGGAGGATTTCTCAGGAGTGGCCACCAACATGGTGTCCTTGAATTCCACCGTGAAGTTCACATTTCGCAACACTGCTACATTTTTTGGGGTTCATGTCAAATCAACGCCTCTTGATCTCTCATTCTCTGAGCTCACCGTAGCCAGCGGAACGACAAACAAATTTTACCAATCGAGAAAGAGTCAGAGACCGATTACAGTGAATTTGATAGGGAACAAAATTCCACTTTACGGTGGGGGAGCAAATTTAGGAAGCTTGAATGGTGCACCTATTCAGCCACTGACACTGGCAATAAAGTTCGAGGTGAGATCGAGAGCTAATGTTTTGGGAAAACTGGTGCGACCTAAGTTCAACAAGAGAGTCGATTGCACTGTGGTTATGGATCCTAAGAAGATGAACGTGGCCATTGCCTTGAAGAACAAATGCACTTACCAATTCATGATTAGAAGAATCACAAAAGGCCTGCTAGCTTCAAAGACCGACTACTTCATAAACAAGCATTGTGCAAAAATTACTAATCCTAACCACCGCATGCAACTCGCAAGTTTCACTATATCAAAATTGGAGACGGCAAAAATACTAGTGGGTGTCGTAGGTAATCATCAATTTTTCGCTTTCTCTCGCCCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

382

Amino Acids

42.31

Weight (kDa)

10.13

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	61, 87, 220, 222, 253
AciI	CCGC	8 cut(s)	56, 59, 87, 179, 228, 253, 663, 1045
AclWI	GGATC	3 cut(s)	315, 893, 906
AcoI	YGGCCR	3 cut(s)	12, 537, 918
AcsI	RAATTY	5 cut(s)	559, 677, 718, 735, 760
AfiI	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
AgsI	TTSAA	7 cut(s)	326, 512, 559, 775, 868, 931, 990
AhlI	ACTAGT	1 cut(s)	1096
AluBI	AGCT	4 cut(s)	649, 771, 833, 986
AluI	AGCT	4 cut(s)	649, 771, 833, 986
Alw21I	GWGCWC	2 cut(s)	651, 784
Alw26I	GTCTC	3 cut(s)	371, 697, 1076
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	315, 893, 906
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	7 cut(s)	12, 208, 296, 334, 537, 918, 976
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	3 cut(s)	36, 78, 258
ApoI	RAATTY	5 cut(s)	559, 677, 718, 735, 760
AspLEI	GCGC	5 cut(s)	63, 87, 222, 285, 415
AspS9I	GGNCC	3 cut(s)	209, 275, 334
AsuC2I	CCSGG	2 cut(s)	238, 517
AsuHPI	GGTGA	3 cut(s)	45, 643, 832
AsuNHI	GCTAGC	1 cut(s)	982
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	460, 784
BalI	TGGCCA	3 cut(s)	14, 539, 920
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	3 cut(s)	113, 176, 651
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	651, 784
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	48, 90, 270
BccI	CCATC	3 cut(s)	125, 163, 356
BceAI	ACGGC	2 cut(s)	283, 1101
BcgI	CGANNNNNNTGC	4 cut(s)	71, 105, 1036, 1070
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	238, 517
BcoDI	GTCTC	3 cut(s)	371, 697, 1076
BcuI	ACTAGT	1 cut(s)	1096
BfaI	CTAG	2 cut(s)	983, 1097
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
BlsI	GCNGC	5 cut(s)	38, 60, 80, 180, 260
Bme1390I	CCNGG	2 cut(s)	238, 517
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	209, 275, 334
BmiI	GGNNCC	3 cut(s)	211, 277, 900
BmrFI	CCNGG	2 cut(s)	238, 517
BmsI	GCATC	1 cut(s)	495
BmtI	GCTAGC	1 cut(s)	986
BpiI	GAAGAC	1 cut(s)	146
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	238, 517
BsaAI	YACGTR	1 cut(s)	103
BsaI	GGTCTC	2 cut(s)	371, 697
BsaJI	CCNNGG	4 cut(s)	27, 205, 299, 516
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 182, 206, 212
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	807, 855
Bse3DI	GCAATG	1 cut(s)	921
BseDI	CCNNGG	4 cut(s)	27, 205, 299, 516
BseLI	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	3 cut(s)	55, 543, 636
BseNI	ACTGG	2 cut(s)	807, 855
BseRI	GAGGAG	2 cut(s)	40, 190
BseSI	GKGCMC	2 cut(s)	460, 784
BseXI	GCAGC	3 cut(s)	48, 90, 270
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	2 cut(s)	111, 125
Bsh1236I	CGCG	5 cut(s)	61, 87, 220, 222, 253
BshFI	GGCC	7 cut(s)	14, 210, 298, 336, 539, 920, 978
BsiHKAI	GWGCWC	2 cut(s)	651, 784
BsiSI	CCGG	3 cut(s)	238, 376, 516
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
BsmAI	GTCTC	3 cut(s)	371, 697, 1076
BsmBI	CGTCTC	1 cut(s)	1076
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	7 cut(s)	14, 210, 298, 336, 539, 920, 978
Bso31I	GGTCTC	2 cut(s)	371, 697
Bsp1286I	GDGCHC	5 cut(s)	113, 176, 460, 651, 784
Bsp143I	GATC	5 cut(s)	307, 496, 631, 824, 898
BspACI	CCGC	8 cut(s)	56, 59, 87, 179, 228, 253, 663, 1045
BspANI	GGCC	7 cut(s)	14, 210, 298, 336, 539, 920, 978
BspCNI	CTCAG	3 cut(s)	54, 542, 637
BspFNI	CGCG	5 cut(s)	61, 87, 220, 222, 253
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	3 cut(s)	211, 277, 900
BspOI	GCTAGC	1 cut(s)	986
BspPI	GGATC	3 cut(s)	315, 893, 906
BspQI	GCTCTTC	1 cut(s)	476
BspTNI	GGTCTC	2 cut(s)	371, 697
BsrDI	GCAATG	1 cut(s)	921
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	807, 855
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	4 cut(s)	27, 205, 299, 516
BssMI	GATC	5 cut(s)	307, 496, 631, 824, 898
Bst4CI	ACNGT	6 cut(s)	272, 568, 655, 715, 749, 889
Bst6I	CTCTTC	2 cut(s)	324, 476
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	41, 529, 645, 861, 903
BstDSI	CCRYGG	1 cut(s)	299
BstFNI	CGCG	5 cut(s)	61, 87, 220, 222, 253
BstHHI	GCGC	5 cut(s)	63, 87, 222, 285, 415
BstKTI	GATC	5 cut(s)	310, 499, 634, 827, 901
BstMAI	GTCTC	3 cut(s)	371, 697, 1076
BstMBI	GATC	5 cut(s)	307, 496, 631, 824, 898
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 64, 69, 78, 84, 171, 255, 455
BstNSI	RCATGY	1 cut(s)	1051
BstSCI	CCNGG	2 cut(s)	236, 515
BstSLI	GKGCMC	2 cut(s)	460, 784
BstUI	CGCG	5 cut(s)	61, 87, 220, 222, 253
BstV1I	GCAGC	3 cut(s)	48, 90, 270
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	898
BstXI	CCANNNNNNTGG	2 cut(s)	169, 547
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	7 cut(s)	14, 210, 298, 336, 539, 920, 978
BtgI	CCRYGG	1 cut(s)	299
BtgZI	GCGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	6 cut(s)	277, 588, 720, 794, 800, 885
CaiI	CAGNNNCTG	1 cut(s)	796
CciI	TCATGA	1 cut(s)	954
CfoI	GCGC	5 cut(s)	63, 87, 222, 285, 415
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	3 cut(s)	209, 275, 334
CviAII	CATG	5 cut(s)	128, 547, 611, 955, 1048
DdeI	CTNAG	5 cut(s)	41, 529, 645, 861, 903
DpnI	GATC	5 cut(s)	309, 498, 633, 826, 900
DpnII	GATC	5 cut(s)	307, 496, 631, 824, 898
EaeI	YGGCCR	3 cut(s)	12, 537, 918
Eam1104I	CTCTTC	2 cut(s)	324, 476
EarI	CTCTTC	2 cut(s)	324, 476
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	649
Eco147I	AGGCCT	1 cut(s)	978
Eco24I	GRGCYC	3 cut(s)	113, 176, 651
Eco31I	GGTCTC	2 cut(s)	371, 697
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	649
EcoICRI	GAGCTC	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	559
EcoT38I	GRGCYC	3 cut(s)	113, 176, 651
Esp3I	CGTCTC	1 cut(s)	1076
FaeI	CATG	5 cut(s)	131, 550, 614, 958, 1051
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	5 cut(s)	127, 546, 610, 954, 1047
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
FriOI	GRGCYC	3 cut(s)	113, 176, 651
Fsp4HI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
FspBI	CTAG	2 cut(s)	983, 1097
GlaI	GCGC	5 cut(s)	62, 86, 221, 284, 414
GluI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	7 cut(s)	14, 210, 298, 336, 539, 920, 978
HapII	CCGG	3 cut(s)	238, 376, 516
HhaI	GCGC	5 cut(s)	63, 87, 222, 285, 415
Hin1II	CATG	5 cut(s)	131, 550, 614, 958, 1051
Hin6I	GCGC	5 cut(s)	61, 85, 220, 283, 413
HinP1I	GCGC	5 cut(s)	61, 85, 220, 283, 413
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	8 cut(s)	23, 122, 224, 317, 436, 697, 876, 966
HpaII	CCGG	3 cut(s)	238, 376, 516
HphI	GGTGA	3 cut(s)	45, 643, 832
Hpy166II	GTNNAC	3 cut(s)	275, 576, 782
Hpy188I	TCNGA	4 cut(s)	28, 491, 646, 702
Hpy188III	TCNNGA	5 cut(s)	531, 629, 690, 828, 955
Hpy8I	GTNNAC	3 cut(s)	275, 576, 782
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	163, 298
HpyCH4III	ACNGT	6 cut(s)	272, 568, 655, 715, 749, 889
HpyCH4IV	ACGT	2 cut(s)	102, 915
HpyCH4V	TGCA	7 cut(s)	92, 106, 782, 885, 942, 1022, 1051
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 64, 69, 78, 84, 171, 255, 455
HpyF3I	CTNAG	5 cut(s)	41, 529, 645, 861, 903
HpySE526I	ACGT	2 cut(s)	102, 915
Hsp92II	CATG	5 cut(s)	131, 550, 614, 958, 1051
HspAI	GCGC	5 cut(s)	61, 85, 220, 283, 413
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	307, 496, 631, 824, 898
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	3 cut(s)	75, 255, 755
Lsp1109I	GCAGC	3 cut(s)	48, 90, 270
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	2 cut(s)	983, 1097
MaeII	ACGT	2 cut(s)	102, 915
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	5 cut(s)	309, 498, 633, 826, 900
MboI	GATC	5 cut(s)	307, 496, 631, 824, 898
MboII	GAAGA	7 cut(s)	151, 338, 341, 493, 919, 943, 975
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	5 cut(s)	113, 176, 460, 651, 784
MlsI	TGGCCA	3 cut(s)	14, 539, 920
MluNI	TGGCCA	3 cut(s)	14, 539, 920
MlyI	GAGTC	5 cut(s)	17, 116, 311, 706, 885
MmeI	TCCRAC	1 cut(s)	219
Mox20I	TGGCCA	3 cut(s)	14, 539, 920
MscI	TGGCCA	3 cut(s)	14, 539, 920
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	3 cut(s)	14, 539, 920
MspA1I	CMGCKG	1 cut(s)	663
MspI	CCGG	3 cut(s)	238, 376, 516
MspR9I	CCNGG	2 cut(s)	238, 517
MvnI	CGCG	5 cut(s)	61, 87, 220, 222, 253
MwoI	GCNNNNNNNGC	8 cut(s)	42, 64, 69, 78, 84, 171, 255, 455
NciI	CCSGG	2 cut(s)	238, 517
NdeII	GATC	5 cut(s)	307, 496, 631, 824, 898
NheI	GCTAGC	1 cut(s)	982
NlaIII	CATG	5 cut(s)	131, 550, 614, 958, 1051
NlaIV	GGNNCC	3 cut(s)	211, 277, 900
NmeAIII	GCCGAG	1 cut(s)	186
NspI	RCATGY	1 cut(s)	1051
PaeI	GCATGC	1 cut(s)	1051
PagI	TCATGA	1 cut(s)	954
PceI	AGGCCT	1 cut(s)	978
PciSI	GCTCTTC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	224, 436, 966
PkrI	GCNGC	5 cut(s)	38, 60, 80, 180, 260
PleI	GAGTC	5 cut(s)	17, 116, 311, 705, 884
PpsI	GAGTC	5 cut(s)	17, 116, 311, 705, 884
Ppu21I	YACGTR	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	211, 277, 900
PspPI	GGNCC	3 cut(s)	209, 275, 334
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	898
RseI	CAYNNNNRTG	1 cut(s)	545
SacI	GAGCTC	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	476
SatI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
Sau3AI	GATC	5 cut(s)	307, 496, 631, 824, 898
Sau96I	GGNCC	3 cut(s)	209, 275, 334
SchI	GAGTC	5 cut(s)	17, 116, 311, 706, 885
ScrFI	CCNGG	2 cut(s)	238, 517
SduI	GDGCHC	5 cut(s)	113, 176, 460, 651, 784
SfaNI	GCATC	1 cut(s)	495
SgrAI	CRCCGGYG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	545
SpeI	ACTAGT	1 cut(s)	1096
SphI	GCATGC	1 cut(s)	1051
SseBI	AGGCCT	1 cut(s)	978
SsiI	CCGC	8 cut(s)	56, 59, 87, 179, 228, 253, 663, 1045
SspMI	CTAG	2 cut(s)	983, 1097
SstI	GAGCTC	1 cut(s)	651
StuI	AGGCCT	1 cut(s)	978
StyD4I	CCNGG	2 cut(s)	236, 515
TaaI	ACNGT	6 cut(s)	272, 568, 655, 715, 749, 889
TaiI	ACGT	2 cut(s)	105, 918
TaqI	TCGA	6 cut(s)	315, 342, 689, 816, 827, 879
TaqII	GACCGA	2 cut(s)	721, 1010
TauI	GCSGC	2 cut(s)	61, 181
TfiI	GAWTC	3 cut(s)	224, 436, 966
TscAI	CASTG	6 cut(s)	277, 595, 720, 801, 807, 892
TseI	GCWGC	3 cut(s)	36, 78, 258
TspDTI	ATGAA	6 cut(s)	385, 494, 599, 926, 943, 994
TspRI	CASTG	6 cut(s)	277, 595, 720, 801, 807, 892
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	5 cut(s)	559, 677, 718, 735, 760
XceI	RCATGY	1 cut(s)	1051
XspI	CTAG	2 cut(s)	983, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.